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Trilinos Master Merge PR Generator: Auto PR created to promote from master_merge_20200422_000613 branch to master #7228

Merged
merged 24 commits into from
Apr 22, 2020
Merged

Trilinos Master Merge PR Generator: Auto PR created to promote from master_merge_20200422_000613 branch to master #7228

merged 24 commits into from
Apr 22, 2020

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Auto PR created to promote from master_merge_20200422_000613 branch to master

mayrmt and others added 24 commits April 17, 2020 07:08
@mayrmt
MueLu: make some documentation doxygen-compatible
19a6c53
@mayrmt
MueLu: remove some trailing white spaces
7be7eac
@mayrmt
MueLu: use Teuchos::null
a767968
@mayrmt
MueLu: get dual/primal node mapping from user data
6af3e1a 
For InterfaceAggregationFactory, the dual-to-primal node mapping needs
to be provided by the user on the "user data" sublist. Then, it is
treated as non-serializable data and added to the hierarchy during
CreateXpetraPreconditioner().

Adapted the test.

Part of #7164.
@mayrmt
MueLu: adapt doc of non-serializable data
87bb388 
- Use proper doxygen code formatting
- Update lists of non-serializable data and make future extensions
easier
@mayrmt
MueLu: fix typos
39e4d95
@bartlettroscoe
ATDM: cee-rhel6: switch from clang-5.0.1 to clang-9.0.1 (ATDV-322)
f338d61 
I tried to add a 'dbg' build but the test suite is very slow and there are a
lot of timeouts.
@bartlettroscoe
ATDM: cee-rhel6: fixed clang-5 typo to clang-9 (ATDV-322)
80d8a8d
@bartlettroscoe
ATDM: cee-rhel6: Remove support for deprecated clang and gnu compiler…
d63778b 
…s/mpi (ATDV-322)

I also removed the "DEPRECATED" label from the intel-18.0.2-mpich2-3.2
compiler because SPARC's CI build on the CEE system machines is still using
this compiler and *not* the updated intel-19.0.3-intelmpi-2018.4 for some
reason.
@bartlettroscoe
Merge remote-tracking branch 'github/develop' into atdv-322-cee-rhel6…
1bbfbcf 
…-clang-9.0.1
@alanw0
Make timer unit-tests more robust to prevent failures due to noise.
96de5ce 
Put the tolerance in terms of milliseconds and make it looser.
If this doesn't help we may need to rethink these tests.
@bartlettroscoe
ATDM: Fix atdm/utils/set_build_options.sh on all platforms/envs (#5939)
b11eaa2 
This makes it robust in case you already have an ATDM Trilinos env loaded.
@bartlettroscoe
ATDM: Add unit tests for cee-rhel6/custom_builds.sh (#5939, ATDV-322)
c9e95fb
@bartlettroscoe
ATDM: Switch cee-rhel6/environment.sh to keyword matching and strengt…
2623c40 
…hen unit tests (ATDV-322, #5939)
@mayrmt
Xpetra: add build target for doxygen documentation
4dd875f 
Add the build target 'doc_xpetra' to create Xpetra's doxygen
documentation in the build directory via running 'make doc_xpetra'.

The new build target uses the same doxygen configuration as the existing
in-source script `build_docs`.

Note: This follows the example of MueLu.

Part of #7218.
@mayrmt
MueLu: adapt doxygen build to changes in Xpetra
8706f49 
- Build target had to be renamed from the generic 'doc' to 'doc_muelu'.
- Convert README to README.md

Part of #7218.
@ccober6
Tempus: Adding AppAction for IMEX RK and Partition
c528426 
 * Added new constructor with AppAction instead of the old Observer.
 * Marked all old Observer usage as DEPRECATED, e.g., observe member data
   setObserver, observer calls, ...
 * Added unit tests to cover the new constructors basic usage of the
   AppAction for IMEX RK and IMEX RK Partition.

Other changes:
 * Documented all IMEX RK and IMEX RK Partition tableaus currently available.
 * Added unit tests to check the stepper's order.
 * Added unit tests for SDIRK_3Stage2ndOrder, SSPDIRK22, SSPDIRK32,
   SSPDIRK23 and SSPDIRK33.
 * Cleaned up RK unit tests (e.g., call support functions with stepper
   instead of stepperType).

All tests pass on my Mac.
@trilinos-autotester
Merge Pull Request #7204 from bartlettroscoe/Trilinos/atdv-322-cee-rh…
d3b754d 
…el6-clang-9.0.1

Automatically Merged using Trilinos Pull Request AutoTester
PR Title: ATDM: cee-rhel6: switch from clang-5.0.1 to clang-9.0.1 (ATDV-322)
PR Author: bartlettroscoe
@trilinos-autotester
Merge Pull Request #7212 from alanw0/Trilinos/stk_20200417_patch
2c40fee 
Automatically Merged using Trilinos Pull Request AutoTester
PR Title: Make timer unit-tests more robust to prevent failures due to noise.
PR Author: alanw0
@mayrmt
Merge pull request #7219 from mayrmt/7218-xpetra-add-doxygen-target
582a2d7 
Xpetra: add build target for doxygen documentation
@mayrmt
Merge pull request #7194 from mayrmt/7164-muelu-interface-node-mappin…
95206b4 
…g-user-data

MueLu: pass primal/dual interface node mapping via user data sublist
@bartlettroscoe
ATDM: van1-tx2: Address problem of 'van1-tx2' matching KOKKOS_ARCH=TX2 (
fb623fb 
#4063, CDOFA-27)

After the "upgrade" of the ATDM Trilinos parsing system to parse out the
KOKKOS_ARCH in either upper or lower case, now the 'tx2' in 'van1-tx2' matches
the KOKKOS_ARCH 'TX2' (lower case 'tx2').  This broke the running of
atdm/van1-tx2/environment.sh.  This broke the nightly ATDM Trilinos 'van1-tx2'
builds and installs of Trilinos from 'stria' today, testing day 2020-04-21.

I updated the error message to show the KOKKOS_ARCH and then I updated the
logic to accept the KOKKOS_ARCH of 'TX2'.  That is a bit of a hack but it gets
us around this problem (and is harmless on this system).
@trilinos-autotester
Merge Pull Request #7222 from bartlettroscoe/Trilinos/5939-atdm-van1-…
9637db9 
…tx2-fix-kokkos-arch-match

Automatically Merged using Trilinos Pull Request AutoTester
PR Title: ATDM: van1-tx2: Address problem of 'van1-tx2' matching KOKKOS_ARCH=TX2 (#4063, CDOFA-27)
PR Author: bartlettroscoe
@ccober6
Merge pull request #7170 from trilinos/7169-Tempus-Add-AppAction-to-I…
591f403 
…MEX-Stepper

Tempus: Add AppAction to IMEX Stepper
@trilinos-autotester trilinos-autotester requested a review from a team as a code owner April 22, 2020 06:06
@trilinos-autotester
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Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

@trilinos-autotester
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Status Flag 'Master Merge AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

  • Build Num: 6399
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
COMPILER_MODULE sems-gcc/4.8.4
FORCE_CLEAN true
JENKINS_BUILD_TYPE Release
JENKINS_COMM_TYPE MPI
JENKINS_DO_COMPLEX OFF
JENKINS_JOB_TYPE Experimental
MPI_MODULE sems-openmpi/1.8.7
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

  • Build Num: 6224
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

  • Build Num: 4651
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_gcc_7.2.0

  • Build Num: 4498
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_gcc_8.3.0

  • Build Num: 687
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_clang_7.0.1

  • Build Num: 165
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_clang_9.0.0

  • Build Num: 389
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_cuda_9.2

  • Build Num: 4016
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Using Repos:

Repo: TRILINOS (trilinos/Trilinos)
  • Branch: master_merge_20200422_000613
  • SHA: 591f403
  • Mode: TEST_REPO

Pull Request Author: trilinos-autotester

@trilinos-autotester
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Status Flag 'Master Merge AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

  • Build Num: 6399
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
COMPILER_MODULE sems-gcc/4.8.4
FORCE_CLEAN true
JENKINS_BUILD_TYPE Release
JENKINS_COMM_TYPE MPI
JENKINS_DO_COMPLEX OFF
JENKINS_JOB_TYPE Experimental
MPI_MODULE sems-openmpi/1.8.7
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

  • Build Num: 6224
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

  • Build Num: 4651
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_gcc_7.2.0

  • Build Num: 4498
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_gcc_8.3.0

  • Build Num: 687
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_clang_7.0.1

  • Build Num: 165
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_clang_9.0.0

  • Build Num: 389
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762

Build Information

Test Name: Trilinos_pullrequest_cuda_9.2

  • Build Num: 4016
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 7228
PULLREQUEST_CDASH_TRACK Clean
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH master_merge_20200422_000613
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 591f403
TRILINOS_TARGET_BRANCH master
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA d0a1762


CDash Test Results for PR# 7228.

@trilinos-autotester
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Status Flag 'Pre-Merge Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

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Status Flag 'Master Merge AutoTester' - Pull Request will be Automerged

@trilinos-autotester trilinos-autotester merged commit 10ad9b8 into master Apr 22, 2020
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Merge on Pull Request# 7228: IS A SUCCESS - Pull Request successfully merged

@william76 william76 deleted the master_merge_20200422_000613 branch June 16, 2020 21:28
@trilinos-autotester trilinos-autotester mentioned this pull request Apr 9, 2022
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5 participants
@trilinos-autotester @mayrmt @bartlettroscoe @alanw0 @ccober6