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Trilinos: Deprecate four packages (second attempt) #4957

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merged 9 commits into from
Apr 25, 2019

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@kddevin kddevin commented Apr 18, 2019

@trilinos/piro @trilinos/optipack @trilinos/claps @trilinos/globipack @trilinos/framework

Description

Second attempt at deprecating Trios, Claps, OptiPack, GlobiPack.
First attempt caused issues that were not caught in PR testing.
First attempt caused problems for Albany and ATDM. #4904
Added more guards in Piro for OptiPack content.
See #4864 for details

Motivation and Context

See #4864

Related Issues

How Has This Been Tested?

Used ATDM testing instructions in #4904

On Linux workstation (three cases):

Standard ATDM configuration for Piro:

cmake \
  -GNinja \
  -DMPI_EXEC=${MPI_EXEC} \
  -DTrilinos_CONFIGURE_OPTIONS_FILE:STRING=cmake/std/atdm/ATDMDevEnv.cmake \
  -DTrilinos_ENABLE_TESTS=ON -DTrilinos_ENABLE_Piro=ON \
.. |& tee OUTPUT.CMAKE
      Start  1: Piro_UnitTests_MPI_1
 1/12 Test  #1: Piro_UnitTests_MPI_1 .............................   Passed    0.34 sec
      Start  2: Piro_Epetra_MatrixFreeOperator_UnitTests_MPI_4
 2/12 Test  #2: Piro_Epetra_MatrixFreeOperator_UnitTests_MPI_4 ...   Passed    0.27 sec
      Start  3: Piro_MatrixFreeDecorator_UnitTests_MPI_4
 3/12 Test  #3: Piro_MatrixFreeDecorator_UnitTests_MPI_4 .........   Passed    0.32 sec
      Start  4: Piro_EvalModel_MPI_4
 4/12 Test  #4: Piro_EvalModel_MPI_4 .............................   Passed    0.27 sec
      Start  5: Piro_ThyraSolver_MPI_4
 5/12 Test  #5: Piro_ThyraSolver_MPI_4 ...........................   Passed    0.42 sec
      Start  6: Piro_AnalysisDriver_MPI_4
 6/12 Test  #6: Piro_AnalysisDriver_MPI_4 ........................   Passed    0.32 sec
      Start  7: Piro_SecondOrderIntegrator_MPI_1
 7/12 Test  #7: Piro_SecondOrderIntegrator_MPI_1 .................   Passed    0.27 sec
      Start  8: Piro_NOXSolver_UnitTests_MPI_4
 8/12 Test  #8: Piro_NOXSolver_UnitTests_MPI_4 ...................   Passed    0.37 sec
      Start  9: Piro_LOCASolver_UnitTests_MPI_4
 9/12 Test  #9: Piro_LOCASolver_UnitTests_MPI_4 ..................   Passed    0.60 sec
      Start 10: Piro_RythmosSolver_UnitTests_MPI_4
10/12 Test #10: Piro_RythmosSolver_UnitTests_MPI_4 ...............   Passed    0.38 sec
      Start 11: Piro_Epetra_RythmosSolver_UnitTests_MPI_4
11/12 Test #11: Piro_Epetra_RythmosSolver_UnitTests_MPI_4 ........   Passed    0.32 sec
      Start 12: Piro_TempusSolver_UnitTests_MPI_4
12/12 Test #12: Piro_TempusSolver_UnitTests_MPI_4 ................   Passed    0.33 sec

100% tests passed, 0 tests failed out of 12

Subproject Time Summary:
Piro    =  14.99 sec*proc (12 tests)

ATDM with Piro and OptiPack enabled (verified that deprecation warnings are produced):

cmake \
  -GNinja \
  -DMPI_EXEC=${MPI_EXEC} \
  -DTrilinos_CONFIGURE_OPTIONS_FILE:STRING=cmake/std/atdm/ATDMDevEnv.cmake \
  -DTrilinos_ENABLE_TESTS=ON -DTrilinos_ENABLE_Piro=ON \
  -DTrilinos_ENABLE_OptiPack=ON -DTrilinos_ENABLE_GlobiPack=ON \
..
       Start  1: GlobiPack_VersionUnitTests_MPI_1
 1/23 Test  #1: GlobiPack_VersionUnitTests_MPI_1 .......................   Passed    0.23 sec
      Start  2: GlobiPack_ArmijoPolyInterpLineSearch_UnitTests_MPI_1
 2/23 Test  #2: GlobiPack_ArmijoPolyInterpLineSearch_UnitTests_MPI_1 ...   Passed    0.22 sec
      Start  3: GlobiPack_GoldenQuadInterpBracket_UnitTests_MPI_1
 3/23 Test  #3: GlobiPack_GoldenQuadInterpBracket_UnitTests_MPI_1 ......   Passed    0.22 sec
      Start  4: GlobiPack_Brents1DMinimization_UnitTests_MPI_1
 4/23 Test  #4: GlobiPack_Brents1DMinimization_UnitTests_MPI_1 .........   Passed    0.22 sec
      Start  5: GlobiPack_BrentsLineSearch_UnitTests_MPI_1
 5/23 Test  #5: GlobiPack_BrentsLineSearch_UnitTests_MPI_1 .............   Passed    0.22 sec
      Start  6: GlobiPack_TestLagrPolyMeritFunc1DUnitTests_MPI_1
6/23 Test  #6: GlobiPack_TestLagrPolyMeritFunc1DUnitTests_MPI_1 .......   Passed    0.22 sec
      Start  7: OptiPack_VersionUnitTests_MPI_1
 7/23 Test  #7: OptiPack_VersionUnitTests_MPI_1 ........................   Passed    0.22 sec
      Start  8: OptiPack_NonlinearCGUnitTests_0_MPI_4
 8/23 Test  #8: OptiPack_NonlinearCGUnitTests_0_MPI_4 ..................   Passed    0.28 sec
      Start  9: OptiPack_NonlinearCGUnitTests_1_MPI_4
 9/23 Test  #9: OptiPack_NonlinearCGUnitTests_1_MPI_4 ..................   Passed    0.28 sec
      Start 10: OptiPack_NonlinearCGUnitTests_2_MPI_4
10/23 Test #10: OptiPack_NonlinearCGUnitTests_2_MPI_4 ..................   Passed    0.28 sec
      Start 11: OptiPack_NonlinearCGUnitTests_3_MPI_4
11/23 Test #11: OptiPack_NonlinearCGUnitTests_3_MPI_4 ..................   Passed    0.29 sec
      Start 12: Piro_UnitTests_MPI_1
12/23 Test #12: Piro_UnitTests_MPI_1 ...................................   Passed    0.27 sec
      Start 13: Piro_Epetra_MatrixFreeOperator_UnitTests_MPI_4
13/23 Test #13: Piro_Epetra_MatrixFreeOperator_UnitTests_MPI_4 .........   Passed    0.26 sec
      Start 14: Piro_MatrixFreeDecorator_UnitTests_MPI_4
14/23 Test #14: Piro_MatrixFreeDecorator_UnitTests_MPI_4 ...............   Passed    0.31 sec
      Start 15: Piro_EvalModel_MPI_4
15/23 Test #15: Piro_EvalModel_MPI_4 ...................................   Passed    0.26 sec
      Start 16: Piro_ThyraSolver_MPI_4
16/23 Test #16: Piro_ThyraSolver_MPI_4 .................................   Passed    0.40 sec
      Start 17: Piro_AnalysisDriver_MPI_4
17/23 Test #17: Piro_AnalysisDriver_MPI_4 ..............................   Passed    0.38 sec
      Start 18: Piro_SecondOrderIntegrator_MPI_1
18/23 Test #18: Piro_SecondOrderIntegrator_MPI_1 .......................   Passed    0.25 sec
      Start 19: Piro_NOXSolver_UnitTests_MPI_4
19/23 Test #19: Piro_NOXSolver_UnitTests_MPI_4 .........................   Passed    0.37 sec
      Start 20: Piro_LOCASolver_UnitTests_MPI_4
20/23 Test #20: Piro_LOCASolver_UnitTests_MPI_4 ........................   Passed    0.57 sec
      Start 21: Piro_RythmosSolver_UnitTests_MPI_4
21/23 Test #21: Piro_RythmosSolver_UnitTests_MPI_4 .....................   Passed    0.34 sec
      Start 22: Piro_Epetra_RythmosSolver_UnitTests_MPI_4
22/23 Test #22: Piro_Epetra_RythmosSolver_UnitTests_MPI_4 ..............   Passed    0.27 sec
      Start 23: Piro_TempusSolver_UnitTests_MPI_4
23/23 Test #23: Piro_TempusSolver_UnitTests_MPI_4 ......................   Passed    0.28 sec

100% tests passed, 0 tests failed out of 23

Subproject Time Summary:
GlobiPack    =   1.33 sec*proc (6 tests)
OptiPack     =   4.75 sec*proc (5 tests)
Piro         =  14.26 sec*proc (12 tests)

Total Test time (real) =   6.70 sec

Claps test (verified that deprecation warnings are produced)

cmake \
  -GNinja \
  -DMPI_EXEC=${MPI_EXEC} \
  -DTrilinos_CONFIGURE_OPTIONS_FILE:STRING=cmake/std/atdm/ATDMDevEnv.cmake \
  -DTrilinos_ENABLE_TESTS=ON -DTrilinos_ENABLE_Claps=ON \
  -DTPL_ENABLE_METIS=ON \
  -D METIS_LIBRARY_DIRS:FILEPATH=${SEMS_METIS_LIBRARY_PATH} \
  -D METIS_INCLUDE_DIRS:FILEPATH=${SEMS_METIS_INCLUDE_PATH} \
..
    Start 1: Claps_TrivialSerial_UnitTest_MPI_1
1/1 Test #1: Claps_TrivialSerial_UnitTest_MPI_1 ...   Passed    0.32 sec

100% tests passed, 0 tests failed out of 1

Subproject Time Summary:
Claps    =   0.32 sec*proc (1 test)

I could not get Trios to compile, and I can not find evidence that anyone else does, either.

@kddevin kddevin added Framework tasks Framework tasks (used internally by Framework team) pkg: OptiPack pkg: Piro pkg: TriOS labels Apr 18, 2019
@kddevin kddevin requested a review from bartlettroscoe April 18, 2019 20:54
@kddevin kddevin self-assigned this Apr 18, 2019
mhoemmen
mhoemmen previously approved these changes Apr 18, 2019
@kddevin kddevin added the AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) label Apr 18, 2019
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@kddevin, if you don't mind, can i rebase this branch on top of 'develop' and run a local build?

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kddevin commented Apr 18, 2019

@bartlettroscoe
Don't do anything yet.
Because of the previous revert, today's merge from develop to my branch trashed a bunch of stuff.
I need to fix more things. I'll let you know when this is ready.

@kddevin kddevin added AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration and removed AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) labels Apr 24, 2019
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kddevin commented Apr 24, 2019

@bartlettroscoe
I think this PR is ready to go.
See the test results above using your ATDM scripts.

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kddevin commented Apr 24, 2019

@ikalash @jrobbin
I am attempting the OptiPack deprecation again. I think the ATDM tests above are representative of your builds.
Let me know right away if it causes any problems for you once the PR merges.

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Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

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Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

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Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

  • Build Num: 3359
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
COMPILER_MODULE sems-gcc/4.8.4
JENKINS_BUILD_TYPE Release
JENKINS_COMM_TYPE MPI
JENKINS_DO_COMPLEX OFF
JENKINS_JOB_TYPE Experimental
MPI_MODULE sems-openmpi/1.8.7
PULLREQUESTNUM 4957
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH deprecateFourPackages
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 2d364fe
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA fd03432

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

  • Build Num: 3186
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
PULLREQUESTNUM 4957
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH deprecateFourPackages
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 2d364fe
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA fd03432

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

  • Build Num: 1631
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
PULLREQUESTNUM 4957
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH deprecateFourPackages
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 2d364fe
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA fd03432

Build Information

Test Name: Trilinos_pullrequest_gcc_7.2.0

  • Build Num: 1366
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
PULLREQUESTNUM 4957
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH deprecateFourPackages
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 2d364fe
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA fd03432

Build Information

Test Name: Trilinos_pullrequest_cuda_9.2

  • Build Num: 1042
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 4957
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH deprecateFourPackages
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 2d364fe
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA fd03432

Using Repos:

Repo: TRILINOS (trilinos/Trilinos)
  • Branch: deprecateFourPackages
  • SHA: 2d364fe
  • Mode: TEST_REPO

Pull Request Author: kddevin

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@kddevin, thanks for testing the ATDM Trilinos configuration to verify it works. This should be okay to merge now.

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Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

  • Build Num: 3359
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
COMPILER_MODULE sems-gcc/4.8.4
JENKINS_BUILD_TYPE Release
JENKINS_COMM_TYPE MPI
JENKINS_DO_COMPLEX OFF
JENKINS_JOB_TYPE Experimental
MPI_MODULE sems-openmpi/1.8.7
PULLREQUESTNUM 4957
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH deprecateFourPackages
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 2d364fe
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA fd03432

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

  • Build Num: 3186
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
PULLREQUESTNUM 4957
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH deprecateFourPackages
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 2d364fe
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA fd03432

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

  • Build Num: 1631
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
PULLREQUESTNUM 4957
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH deprecateFourPackages
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 2d364fe
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA fd03432

Build Information

Test Name: Trilinos_pullrequest_gcc_7.2.0

  • Build Num: 1366
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
PULLREQUESTNUM 4957
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH deprecateFourPackages
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 2d364fe
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA fd03432

Build Information

Test Name: Trilinos_pullrequest_cuda_9.2

  • Build Num: 1042
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
JENKINS_JOB_TYPE Experimental
PULLREQUESTNUM 4957
TEST_REPO_ALIAS TRILINOS
TRILINOS_SOURCE_BRANCH deprecateFourPackages
TRILINOS_SOURCE_REPO https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA 2d364fe
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA fd03432


CDash Test Results for PR# 4957.

@trilinos-autotester trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Apr 25, 2019
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Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ bartlettroscoe mhoemmen ]!

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Status Flag 'Pull Request AutoTester' - Pull Request will be Automerged

@trilinos-autotester trilinos-autotester merged commit 1190c56 into develop Apr 25, 2019
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Merge on Pull Request# 4957: IS A SUCCESS - Pull Request successfully merged

@trilinos-autotester trilinos-autotester removed the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Apr 25, 2019
@kddevin kddevin deleted the deprecateFourPackages branch April 30, 2019 16:35
jmgate pushed a commit to tcad-charon/Trilinos that referenced this pull request Oct 23, 2019
…s:develop' (429b3db).

* trilinos-develop: (38 commits)
  stk snapshot as of 10/21/2019
  Ifpack2: Adding Richardson support to Ifpack2::Relaxation
  PullRequestLinuxDriver.sh: remove ".sandia.gov" from the no_proxy environemt variable
  MueLu: Stuff for running w/o a pre-smoother
  Removing dependence on optipack (better guards; removed XML ) trilinos#4957
  Clean up handling of compiler parsing matching (trilinos#6124)
  ATDM: Disable ROL tests that don't work with CUDA (trilinos#6124)
  ATDM: Move broad disables of individual tests to the ATDMDisables.cmake file
  ATDM: Remove unused files after switching to waterman/tweaks/Tweaks.cmake
  SQUASH AGAINST: ATDM: Add support for a single <system_name>/tweaks/Tweaks.cmake file
  ATDM: Disable two Intrepid2 tests for gnu+openmp+debug build (trilinos#6020)
  ATDM: Disable several Tempus tests in all waterman debug builds (trilinos#6009)
  ATDM: Switch to usage of Tweaks.cmake file for 'ride' builds
  ATDM: Disable several Tempus tests in all waterman debug builds (trilinos#6009)
  SEACAS: Allow for disable of explore exe (trilinos#6008)
  ATDM: Disable SEACAS explore build on cuda+rdc builds (trilinos#6008)
  ATDM: Switch to use of Tweaks.cmake file for waterman builds
  ATDM: Add support for a single <system_name>/tweaks/Tweaks.cmake file
  Tempus: Cleanup some warnings.
  rythmos:  fixed printing of Teuchos::SerialDense* to remove deprecated behavior.  Following pattern in trilinos#5374.
  ...
jmgate pushed a commit to tcad-charon/Trilinos that referenced this pull request Oct 23, 2019
…s:develop' (429b3db).

* trilinos-develop: (38 commits)
  stk snapshot as of 10/21/2019
  Ifpack2: Adding Richardson support to Ifpack2::Relaxation
  PullRequestLinuxDriver.sh: remove ".sandia.gov" from the no_proxy environemt variable
  MueLu: Stuff for running w/o a pre-smoother
  Removing dependence on optipack (better guards; removed XML ) trilinos#4957
  Clean up handling of compiler parsing matching (trilinos#6124)
  ATDM: Disable ROL tests that don't work with CUDA (trilinos#6124)
  ATDM: Move broad disables of individual tests to the ATDMDisables.cmake file
  ATDM: Remove unused files after switching to waterman/tweaks/Tweaks.cmake
  SQUASH AGAINST: ATDM: Add support for a single <system_name>/tweaks/Tweaks.cmake file
  ATDM: Disable two Intrepid2 tests for gnu+openmp+debug build (trilinos#6020)
  ATDM: Disable several Tempus tests in all waterman debug builds (trilinos#6009)
  ATDM: Switch to usage of Tweaks.cmake file for 'ride' builds
  ATDM: Disable several Tempus tests in all waterman debug builds (trilinos#6009)
  SEACAS: Allow for disable of explore exe (trilinos#6008)
  ATDM: Disable SEACAS explore build on cuda+rdc builds (trilinos#6008)
  ATDM: Switch to use of Tweaks.cmake file for waterman builds
  ATDM: Add support for a single <system_name>/tweaks/Tweaks.cmake file
  Tempus: Cleanup some warnings.
  rythmos:  fixed printing of Teuchos::SerialDense* to remove deprecated behavior.  Following pattern in trilinos#5374.
  ...
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