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Intrepid2: add support for weighted gradients in sum-factorized assembly #13391

Merged
merged 29 commits into from
Aug 27, 2024
Merged

Intrepid2: add support for weighted gradients in sum-factorized assembly #13391

merged 29 commits into from
Aug 27, 2024

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CamelliaDPG
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@trilinos/intrepid2

Motivation

This PR adds support for additional uses cases to the existing sum-factorized assembly mechanism. On the way, it adds support for vector weights to TransformedBasisValues; previously, only matrix and scalar weights were supported.

This PR also makes some minor adjustments to the timings performed in StructuredIntegrationPerformance.cpp to ensure fair comparisons.

The new use cases are demonstrated most directly in the following:

packages/intrepid2/assembly-examples/VectorWeightedGRADGRADStructuredAssembly.hpp

which demonstrates performing an integral of the form

$({\mathbf a} \cdot \nabla e_i, {\mathbf b} \cdot \nabla e_j)$

for an $H^1$ basis.

Testing

The new use cases are well-exercised by the tests; a new set of VectorWeightedPoisson test cases (corresponding to the integral above) are included in the structured-versus-standard tests.

CamelliaDPG added 27 commits May 9, 2024 12:16
@CamelliaDPG
Added support for dot products to Intrepid2_Data; added a correspondi…
c7b814d 
…ng test. Also hardened the test MatVec_CPDD_transpose to include a check that u' A v = v' A' u for vectors u, v.
@CamelliaDPG
Added free function rank() taking BasisValues object as argument.
a755b43
@CamelliaDPG
Data: fixed an issue in allocateMatVec in which an incorrect variatio…
c635cb5 
…n type and/or incorrect extent could be used for the final result dimension.
@CamelliaDPG
TransformedBasisValues: added support for a (C,P,D) transform, with t…
d9499b7 
…he main use case being a dot product with a vector-valued basis evaluation.
@CamelliaDPG
Adding support for vector-weighted assembly, in which a dot product i…
fd2e262 
…s taken with a vector-valued basis evaluation, to structured integration. Right now, the integrate() method has not been revised to include this support, but tests have been added testing it. These run to completion, with 17/426 test failures in MonolithicExecutable. So now the task is to revise integrate() to get the test failures resolved.

Here's the list of failing tests:

The following tests FAILED:
    155. StructuredIntegration_HCURL_CURL_HGRAD_GRAD_StructuredVersusStandardVectorWeighted_D3_P2_P1_UnitTest ...
    159. StructuredIntegration_HCURL_VALUE_HDIV_VALUE_StructuredVersusStandardVectorWeighted_D2_P2_P1_UnitTest ...
    160. StructuredIntegration_HCURL_VALUE_HDIV_VALUE_StructuredVersusStandardVectorWeighted_D3_P2_P1_UnitTest ...
    189. StructuredIntegration_HGRAD_GRAD_HGRAD_GRAD_StructuredVersusStandardVectorWeighted_D2_P2_P1_UnitTest ...
    193. StructuredIntegration_HGRAD_GRAD_HGRAD_GRAD_StructuredVersusStandardVectorWeighted_D3_P2_P1_UnitTest ...
    378. StructuredIntegration_VectorWeightedPoissonFormulation_D1_P1_GeneralStructuredIntegration_UnitTest ...
    380. StructuredIntegration_VectorWeightedPoissonFormulation_D2_P3_GeneralStructuredIntegration_UnitTest ...
    382. StructuredIntegration_VectorWeightedPoissonFormulation_D3_P3_GeneralStructuredIntegration_UnitTest ...
    383. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D1_P1_QuadratureUniformMesh_UnitTest ...
    384. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D1_P2_QuadratureUniformMesh_UnitTest ...
    385. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D1_P4_QuadratureUniformMesh_UnitTest ...
    386. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D2_P1_QuadratureUniformMesh_UnitTest ...
    387. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D2_P2_QuadratureUniformMesh_UnitTest ...
    388. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D2_P3_QuadratureUniformMesh_UnitTest ...
    389. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D3_P1_QuadratureUniformMesh_UnitTest ...
    390. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D3_P2_QuadratureUniformMesh_UnitTest ...
    391. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D3_P3_QuadratureUniformMesh_UnitTest ...
@CamelliaDPG
Fixed an issue with VectorWeightedGRADGRADStructuredAssembly. Now dow…
a41db48 
…n to 11/425 tests failing:

The following tests FAILED:
    155. StructuredIntegration_HCURL_CURL_HGRAD_GRAD_StructuredVersusStandardVectorWeighted_D3_P2_P1_UnitTest ...
    159. StructuredIntegration_HCURL_VALUE_HDIV_VALUE_StructuredVersusStandardVectorWeighted_D2_P2_P1_UnitTest ...
    160. StructuredIntegration_HCURL_VALUE_HDIV_VALUE_StructuredVersusStandardVectorWeighted_D3_P2_P1_UnitTest ...
    189. StructuredIntegration_HGRAD_GRAD_HGRAD_GRAD_StructuredVersusStandardVectorWeighted_D2_P2_P1_UnitTest ...
    193. StructuredIntegration_HGRAD_GRAD_HGRAD_GRAD_StructuredVersusStandardVectorWeighted_D3_P2_P1_UnitTest ...
    386. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D2_P1_QuadratureUniformMesh_UnitTest ...
    387. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D2_P2_QuadratureUniformMesh_UnitTest ...
    388. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D2_P3_QuadratureUniformMesh_UnitTest ...
    389. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D3_P1_QuadratureUniformMesh_UnitTest ...
    390. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D3_P2_QuadratureUniformMesh_UnitTest ...
    391. StructuredIntegration_VectorWeightedPoissonFormulation_NonAffineTensorAlgorithm_D3_P3_QuadratureUniformMesh_UnitTest ...
@CamelliaDPG
Adding support for rank 3 transforms in integrate().
224aeea
@CamelliaDPG
In allocateMatMatResult(), fixed an issue in which the wrong getUnder…
c2c094d 
…lyingView() method was being called; resolved by calling the one that gets a DynRankView.
@CamelliaDPG
Fixed build issues in StructuredIntegrationPerformance.
151ecbf
@CamelliaDPG
Added a test against taking the outer product of two vectors; fixed t…
241ec64 
…he issue that this demonstrates in Intrepid2::Data.
@CamelliaDPG
Added test template StructuredVersusStandardVectorWeighted_D2_P1_P1.
c1db849
@CamelliaDPG
Fixed an issue with the transpose arguments to a mat-mat call.
b7c9b50
@CamelliaDPG
StructuredIntegrationPerformance: adding support for vector-weighted …
996d3bc 
…Poisson case.
@CamelliaDPG
Merge branch 'develop' into intrepid2-add-support-for-weighted-gradients
66913eb
@CamelliaDPG
In setJacobianDetInv(), corrected argument name in method declaration…
ae9f488 
… and doxygen.
@CamelliaDPG
In DataTools, broadened the use cases for multiplyByCPWeights(), and …
71beeb2 
…added a transposeMatrix() method.
@CamelliaDPG
In TransformedBasisValues, fixed some issues with spaceDim().
d00b09c
@CamelliaDPG
In StandardAssembly and StructuredAssembly, revised to support more v…
502a4a5 
…ector-weighted use cases.
@CamelliaDPG
Added more vector-weighted tests, covering cases when a vector field …
209d267 
…is dotted with a vector and then integrated against a scalar.
@CamelliaDPG
In integrate(), added support for more vector-weighted use cases. Als…
61bdc76 
…o corrected a couple bugs affecting prior use cases.
@CamelliaDPG
Added a return value to avoid compiler warnings (in fact the statemen…
eb42a4f 
…t will be unreachable, due to constraints imposed elsewhere).
@CamelliaDPG
Added "best" workset sizes for VectorWeightedPoisson for Serial and O…
77e8b4c 
…penMP_16 (not CUDA).
@CamelliaDPG
Revising the Point-value intermediates implementation to more fully e…
0a86abb 
…xploit vector parallelism.
@CamelliaDPG
Modified H(curl) standard assembly to exclude the orientation applica…
66d037a 
…tion from "core integration" timing.
@CamelliaDPG
Added VectorWeightedPoisson to allFormulationChoices. For now, settin…
1bf5061 
…g the "best" CUDA choices to match Poisson. But we need to redo those calibrations regardless, and maybe switch to reading them in from file: these are for older CUDA cards.
@CamelliaDPG
Modified all Standard assembly implementations to exclude orientation…
3c4e268 
…s from core integration timings.
@CamelliaDPG
Merge branch 'develop' into intrepid2-add-support-for-weighted-gradie…
fddec86 
…nts-restored
@CamelliaDPG CamelliaDPG requested a review from a team as a code owner August 26, 2024 16:44
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  • Branch: intrepid2-add-support-for-weighted-gradients-restored
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Using Repos:

Repo: TRILINOS (CamelliaDPG/Trilinos)
  • Branch: intrepid2-add-support-for-weighted-gradients-restored
  • SHA: 38f5cfe
  • Mode: TEST_REPO

Pull Request Author: CamelliaDPG

mperego
mperego reviewed Aug 26, 2024
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This is great, Nate!
The code looks reasonable to me. Thanks also for adding several tests.

While you are working on this, I might be good to address the valgrind warnings https://sems-cdash-son.sandia.gov/cdash/viewDynamicAnalysisFile.php?id=3523 for the Structured Integration Performance test (see issue #11847). I spent some time on it today but I could not figure out what's the issue.

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Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

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TRILINOS_TARGET_SHA 4b4c119


CDash Test Results for PR# 13391.


Wiki: How to Reproduce PR Testing Builds and Errors.

@CamelliaDPG
Fixed an error in some ternary operators to set "ultimateBasisRank1,u…
f8b4657 
…ltimateBasisRank2" in StandardAssembly. This was probably executing correct code for compilers where it compiled, but some of the CI compilers complained. In any case, I had an extraneous "var =" inside the ternary operator, which I did not intend.
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This is great, Nate! The code looks reasonable to me. Thanks also for adding several tests.

While you are working on this, I might be good to address the valgrind warnings https://sems-cdash-son.sandia.gov/cdash/viewDynamicAnalysisFile.php?id=3523 for the Structured Integration Performance test (see issue #11847). I spent some time on it today but I could not figure out what's the issue.

I've added a comment on that issue, with a suggested change to the testing setup. I think it's a matter of how valgrind is getting invoked; we've run into something similar in the past; I think the errors may be spurious.

@trilinos-autotester
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Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

@trilinos-autotester
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Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

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  • Build Num: 423
  • Status: STARTED

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Using Repos:

Repo: TRILINOS (CamelliaDPG/Trilinos)
  • Branch: intrepid2-add-support-for-weighted-gradients-restored
  • SHA: f8b4657
  • Mode: TEST_REPO

Pull Request Author: CamelliaDPG

@mperego
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mperego commented Aug 27, 2024

This is great, Nate! The code looks reasonable to me. Thanks also for adding several tests.
While you are working on this, I might be good to address the valgrind warnings https://sems-cdash-son.sandia.gov/cdash/viewDynamicAnalysisFile.php?id=3523 for the Structured Integration Performance test (see issue #11847). I spent some time on it today but I could not figure out what's the issue.

I've added a comment on that issue, with a suggested change to the testing setup. I think it's a matter of how valgrind is getting invoked; we've run into something similar in the past; I think the errors may be spurious.

Yes, I can confirm that that using the valgrind flag that you proposed fixes the problem on my Workstation.

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Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: PR_gcc-openmpi-openmp

  • Build Num: 423
  • Status: PASSED

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PULLREQUESTNUM 13391
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TRILINOS_TARGET_SHA 4b4c119

Build Information

Test Name: PR_gcc

  • Build Num: 473
  • Status: PASSED

Jenkins Parameters

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PR_LABELS
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Build Information

Test Name: PR_gcc-openmpi_debug

  • Build Num: 474
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Build Information

Test Name: PR_clang

  • Build Num: 472
  • Status: PASSED

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  • Build Num: 471
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TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 4b4c119


CDash Test Results for PR# 13391.

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Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ mperego ]!

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Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

@CamelliaDPG CamelliaDPG merged commit 9c6525b into trilinos:develop Aug 27, 2024
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