diff --git a/NAMESPACE b/NAMESPACE index 197845db89..f0ccf3bec1 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -344,6 +344,7 @@ export(draw_key_vpath) export(dup_axis) export(el_def) export(element_blank) +export(element_geom) export(element_grob) export(element_line) export(element_rect) @@ -367,6 +368,7 @@ export(find_panel) export(flip_data) export(flipped_names) export(fortify) +export(from_theme) export(geom_abline) export(geom_area) export(geom_bar) @@ -422,6 +424,7 @@ export(geom_violin) export(geom_vline) export(get_alt_text) export(get_element_tree) +export(get_geom_defaults) export(get_guide_data) export(get_last_plot) export(get_layer_data) diff --git a/NEWS.md b/NEWS.md index 4cab4f4c79..8c5ca3c555 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,11 @@ # ggplot2 (development version) +* (Breaking) The defaults for all geoms can be set at one in the theme. + (@teunbrand based on pioneering work by @dpseidel, #2239) + * A new `theme(geom)` argument is used to track these defaults. + * The `element_geom()` function can be used to populate that argument. + * The `from_theme()` function allows access to the theme default fields from + inside the `aes()` function. * Passing empty unmapped aesthetics to layers raises a warning instead of throwing an error (@teunbrand, #6009). * Moved {mgcv} from Imports to Suggests (@teunbrand, #5986) diff --git a/R/aes-evaluation.R b/R/aes-evaluation.R index 4c682e3f63..5554b54772 100644 --- a/R/aes-evaluation.R +++ b/R/aes-evaluation.R @@ -109,6 +109,13 @@ #' fun.data = ~ round(data.frame(mean = mean(.x), sd = sd(.x)), 2) #' ) #' ``` +#' +#' ## Theme access +#' The `from_theme()` function can be used to acces the [`element_geom()`] +#' fields of the `theme(geom)` argument. Using `aes(colour = from_theme(ink))` +#' and `aes(colour = from_theme(accent))` allows swapping between foreground and +#' accent colours. +#' #' @rdname aes_eval #' @name aes_eval #' @@ -192,6 +199,13 @@ stat <- function(x) { after_scale <- function(x) { x } + +#' @rdname aes_eval +#' @export +from_theme <- function(x) { + x +} + #' @rdname aes_eval #' @export stage <- function(start = NULL, after_stat = NULL, after_scale = NULL) { @@ -221,6 +235,9 @@ is_scaled_aes <- function(aesthetics) { is_staged_aes <- function(aesthetics) { vapply(aesthetics, is_staged, logical(1), USE.NAMES = FALSE) } +is_themed_aes <- function(aesthetics) { + vapply(aesthetics, is_themed, logical(1), USE.NAMES = FALSE) +} is_calculated <- function(x, warn = FALSE) { if (is_call(get_expr(x), "after_stat")) { return(TRUE) @@ -263,6 +280,9 @@ is_scaled <- function(x) { is_staged <- function(x) { is_call(get_expr(x), "stage") } +is_themed <- function(x) { + is_call(get_expr(x), "from_theme") +} # Strip dots from expressions strip_dots <- function(expr, env, strip_pronoun = FALSE) { diff --git a/R/annotation-logticks.R b/R/annotation-logticks.R index 13c8f609f5..aa03d472cf 100644 --- a/R/annotation-logticks.R +++ b/R/annotation-logticks.R @@ -228,7 +228,12 @@ GeomLogticks <- ggproto("GeomLogticks", Geom, gTree(children = inject(gList(!!!ticks))) }, - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, alpha = 1) + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + alpha = 1 + ) ) diff --git a/R/geom-.R b/R/geom-.R index c3da9be244..5b6a2af09d 100644 --- a/R/geom-.R +++ b/R/geom-.R @@ -114,7 +114,8 @@ Geom <- ggproto("Geom", setup_data = function(data, params) data, # Combine data with defaults and set aesthetics from parameters - use_defaults = function(self, data, params = list(), modifiers = aes(), default_aes = NULL, ...) { + use_defaults = function(self, data, params = list(), modifiers = aes(), + default_aes = NULL, theme = NULL, ...) { default_aes <- default_aes %||% self$default_aes # Inherit size as linewidth if no linewidth aesthetic and param exist @@ -131,8 +132,11 @@ Geom <- ggproto("Geom", # Fill in missing aesthetics with their defaults missing_aes <- setdiff(names(default_aes), names(data)) + default_aes <- default_aes[missing_aes] + themed_defaults <- eval_from_theme(default_aes, theme) + default_aes[names(themed_defaults)] <- themed_defaults - missing_eval <- lapply(default_aes[missing_aes], eval_tidy) + missing_eval <- lapply(default_aes, eval_tidy) # Needed for geoms with defaults set to NULL (e.g. GeomSf) missing_eval <- compact(missing_eval) @@ -142,6 +146,13 @@ Geom <- ggproto("Geom", data[names(missing_eval)] <- missing_eval } + themed <- is_themed_aes(modifiers) + if (any(themed)) { + themed <- eval_from_theme(modifiers[themed], theme) + modifiers <- modifiers[setdiff(names(modifiers), names(themed))] + data[names(themed)] <- themed + } + # If any after_scale mappings are detected they will be resolved here # This order means that they will have access to all default aesthetics if (length(modifiers) != 0) { @@ -226,6 +237,15 @@ Geom <- ggproto("Geom", ) +eval_from_theme <- function(aesthetics, theme) { + themed <- is_themed_aes(aesthetics) + if (!any(themed)) { + return(aesthetics) + } + settings <- calc_element("geom", theme) %||% .default_geom_element + lapply(aesthetics[themed], eval_tidy, data = settings) +} + #' Graphical units #' #' Multiply size in mm by these constants in order to convert to the units diff --git a/R/geom-abline.R b/R/geom-abline.R index da65483635..e9775e33fb 100644 --- a/R/geom-abline.R +++ b/R/geom-abline.R @@ -142,7 +142,13 @@ GeomAbline <- ggproto("GeomAbline", Geom, GeomSegment$draw_panel(unique0(data), panel_params, coord, lineend = lineend) }, - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, alpha = NA), + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + alpha = NA + ), + required_aes = c("slope", "intercept"), draw_key = draw_key_abline, diff --git a/R/geom-boxplot.R b/R/geom-boxplot.R index 399f92d7a8..1ac23ba80f 100644 --- a/R/geom-boxplot.R +++ b/R/geom-boxplot.R @@ -117,8 +117,8 @@ geom_boxplot <- function(mapping = NULL, data = NULL, outlier.colour = NULL, outlier.color = NULL, outlier.fill = NULL, - outlier.shape = 19, - outlier.size = 1.5, + outlier.shape = NULL, + outlier.size = NULL, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, @@ -223,8 +223,8 @@ GeomBoxplot <- ggproto("GeomBoxplot", Geom, draw_group = function(self, data, panel_params, coord, lineend = "butt", linejoin = "mitre", fatten = 2, outlier.colour = NULL, - outlier.fill = NULL, outlier.shape = 19, - outlier.size = 1.5, outlier.stroke = 0.5, + outlier.fill = NULL, outlier.shape = NULL, + outlier.size = NULL, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, flipped_aes = FALSE) { data <- check_linewidth(data, snake_class(self)) @@ -327,8 +327,12 @@ GeomBoxplot <- ggproto("GeomBoxplot", Geom, draw_key = draw_key_boxplot, - default_aes = aes(weight = 1, colour = "grey20", fill = "white", size = NULL, - alpha = NA, shape = 19, linetype = "solid", linewidth = 0.5), + default_aes = aes( + weight = 1, colour = from_theme(col_mix(ink, paper, 0.2)), + fill = from_theme(paper), size = from_theme(pointsize), + alpha = NA, shape = from_theme(pointshape), linetype = from_theme(bordertype), + linewidth = from_theme(borderwidth) + ), required_aes = c("x|y", "lower|xlower", "upper|xupper", "middle|xmiddle", "ymin|xmin", "ymax|xmax"), diff --git a/R/geom-contour.R b/R/geom-contour.R index 7dfe9fb228..a73bc3a135 100644 --- a/R/geom-contour.R +++ b/R/geom-contour.R @@ -126,9 +126,9 @@ geom_contour_filled <- function(mapping = NULL, data = NULL, GeomContour <- ggproto("GeomContour", GeomPath, default_aes = aes( weight = 1, - colour = "#3366FF", - linewidth = 0.5, - linetype = 1, + colour = from_theme(accent), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), alpha = NA ) ) diff --git a/R/geom-crossbar.R b/R/geom-crossbar.R index 36c3d4b9ff..1f7c66f832 100644 --- a/R/geom-crossbar.R +++ b/R/geom-crossbar.R @@ -40,8 +40,13 @@ GeomCrossbar <- ggproto("GeomCrossbar", Geom, GeomErrorbar$setup_data(data, params) }, - default_aes = aes(colour = "black", fill = NA, linewidth = 0.5, linetype = 1, - alpha = NA), + default_aes = aes( + colour = from_theme(ink), + fill = NA, + linewidth = from_theme(borderwidth), + linetype = from_theme(bordertype), + alpha = NA + ), required_aes = c("x", "y", "ymin|xmin", "ymax|xmax"), diff --git a/R/geom-curve.R b/R/geom-curve.R index 4c5b60e2c5..e1c38d1cd4 100644 --- a/R/geom-curve.R +++ b/R/geom-curve.R @@ -40,7 +40,14 @@ geom_curve <- function(mapping = NULL, data = NULL, #' @usage NULL #' @export GeomCurve <- ggproto("GeomCurve", GeomSegment, - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, alpha = NA), + + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + alpha = NA + ), + draw_panel = function(data, panel_params, coord, curvature = 0.5, angle = 90, ncp = 5, arrow = NULL, arrow.fill = NULL, lineend = "butt", na.rm = FALSE) { diff --git a/R/geom-defaults.R b/R/geom-defaults.R index e4e09ce71c..65974f841a 100644 --- a/R/geom-defaults.R +++ b/R/geom-defaults.R @@ -9,6 +9,9 @@ #' * A named list of aesthetics to serve as new defaults. #' * `NULL` to reset the defaults. #' @keywords internal +#' @note +#' Please note that geom defaults can be set *en masse* via the `theme(geom)` +#' argument. #' @export #' @examples #' @@ -51,6 +54,57 @@ update_stat_defaults <- function(stat, new) { update_defaults(stat, "Stat", new, env = parent.frame()) } +#' Resolve and get geom defaults +#' +#' @param geom Some definition of a geom: +#' * A `function` that creates a layer, e.g. `geom_path()`. +#' * A layer created by such function +#' * A string naming a geom class in snake case without the `geom_`-prefix, +#' e.g. `"contour_filled"`. +#' * A geom class object. +#' @param theme A [`theme`] object. Defaults to the current global theme. +#' +#' @return A list of aesthetics +#' @export +#' @keywords internal +#' +#' @examples +#' # Using a function +#' get_geom_defaults(geom_raster) +#' +#' # Using a layer includes static aesthetics as default +#' get_geom_defaults(geom_tile(fill = "white")) +#' +#' # Using a class name +#' get_geom_defaults("density_2d") +#' +#' # Using a class +#' get_geom_defaults(GeomPoint) +#' +#' # Changed theme +#' get_geom_defaults("point", theme(geom = element_geom(ink = "purple"))) +get_geom_defaults <- function(geom, theme = theme_get()) { + theme <- theme %||% list(geom = .default_geom_element) + + if (is.function(geom)) { + geom <- geom() + } + if (is.layer(geom)) { + data <- data_frame0(.id = 1L) + data <- geom$compute_geom_2(data = data, theme = theme) + data$.id <- NULL + return(data) + } + if (is.character(geom)) { + geom <- check_subclass(geom, "Geom") + } + if (inherits(geom, "Geom")) { + out <- geom$use_defaults(data = NULL, theme = theme) + return(out) + } + stop_input_type(geom, as_cli("a layer function, string or {.cls Geom} object")) +} + #' @rdname update_defaults #' @export reset_geom_defaults <- function() reset_defaults("geom") diff --git a/R/geom-density.R b/R/geom-density.R index c71a9f98eb..a4a7754f2e 100644 --- a/R/geom-density.R +++ b/R/geom-density.R @@ -93,7 +93,7 @@ geom_density <- function(mapping = NULL, data = NULL, #' @include geom-ribbon.R GeomDensity <- ggproto("GeomDensity", GeomArea, default_aes = defaults( - aes(fill = NA, weight = 1, colour = "black", alpha = NA), + aes(fill = NA, weight = 1, colour = from_theme(ink), alpha = NA), GeomArea$default_aes ) ) diff --git a/R/geom-density2d.R b/R/geom-density2d.R index e95a8b2c31..832546b563 100644 --- a/R/geom-density2d.R +++ b/R/geom-density2d.R @@ -106,7 +106,12 @@ geom_density2d <- geom_density_2d #' @usage NULL #' @export GeomDensity2d <- ggproto("GeomDensity2d", GeomPath, - default_aes = aes(colour = "#3366FF", linewidth = 0.5, linetype = 1, alpha = NA) + default_aes = aes( + colour = from_theme(accent), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + alpha = NA + ) ) #' @export diff --git a/R/geom-dotplot.R b/R/geom-dotplot.R index 7a0f9a5e08..54b7ce1f57 100644 --- a/R/geom-dotplot.R +++ b/R/geom-dotplot.R @@ -188,8 +188,14 @@ GeomDotplot <- ggproto("GeomDotplot", Geom, required_aes = c("x", "y"), non_missing_aes = c("size", "shape"), - default_aes = aes(colour = "black", fill = "black", alpha = NA, - stroke = 1, linetype = "solid", weight = 1), + default_aes = aes( + colour = from_theme(ink), + fill = from_theme(ink), + alpha = NA, + stroke = from_theme(borderwidth * 2), + linetype = from_theme(linetype), + weight = 1 + ), setup_data = function(data, params) { data$width <- data$width %||% diff --git a/R/geom-errorbar.R b/R/geom-errorbar.R index c02ab16ed9..3e40b20318 100644 --- a/R/geom-errorbar.R +++ b/R/geom-errorbar.R @@ -28,8 +28,14 @@ geom_errorbar <- function(mapping = NULL, data = NULL, #' @usage NULL #' @export GeomErrorbar <- ggproto("GeomErrorbar", Geom, - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, width = 0.5, - alpha = NA), + + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + width = 0.5, + alpha = NA + ), draw_key = draw_key_path, diff --git a/R/geom-errorbarh.R b/R/geom-errorbarh.R index b23d125da4..c38b9b7cd6 100644 --- a/R/geom-errorbarh.R +++ b/R/geom-errorbarh.R @@ -51,8 +51,14 @@ geom_errorbarh <- function(mapping = NULL, data = NULL, #' @usage NULL #' @export GeomErrorbarh <- ggproto("GeomErrorbarh", Geom, - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, height = 0.5, - alpha = NA), + + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + height = 0.5, + alpha = NA + ), draw_key = draw_key_path, diff --git a/R/geom-hex.R b/R/geom-hex.R index 8573d6d8ba..0eb777b808 100644 --- a/R/geom-hex.R +++ b/R/geom-hex.R @@ -107,9 +107,9 @@ GeomHex <- ggproto("GeomHex", Geom, default_aes = aes( colour = NA, - fill = "grey50", - linewidth = 0.5, - linetype = 1, + fill = from_theme(col_mix(ink, paper)), + linewidth = from_theme(borderwidth), + linetype = from_theme(bordertype), alpha = NA ), diff --git a/R/geom-hline.R b/R/geom-hline.R index 6b80d0bb08..2650066183 100644 --- a/R/geom-hline.R +++ b/R/geom-hline.R @@ -56,7 +56,12 @@ GeomHline <- ggproto("GeomHline", Geom, GeomSegment$draw_panel(unique0(data), panel_params, coord, lineend = lineend) }, - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, alpha = NA), + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + alpha = NA + ), required_aes = "yintercept", draw_key = draw_key_path, diff --git a/R/geom-label.R b/R/geom-label.R index a265850f91..4168c98d94 100644 --- a/R/geom-label.R +++ b/R/geom-label.R @@ -56,8 +56,11 @@ GeomLabel <- ggproto("GeomLabel", Geom, required_aes = c("x", "y", "label"), default_aes = aes( - colour = "black", fill = "white", size = 3.88, angle = 0, - hjust = 0.5, vjust = 0.5, alpha = NA, family = "", fontface = 1, + colour = from_theme(ink), fill = from_theme(paper), + family = from_theme(family), + size = from_theme(fontsize), + angle = 0, + hjust = 0.5, vjust = 0.5, alpha = NA, fontface = 1, lineheight = 1.2 ), diff --git a/R/geom-linerange.R b/R/geom-linerange.R index 7144d0084a..83360800e2 100644 --- a/R/geom-linerange.R +++ b/R/geom-linerange.R @@ -91,7 +91,13 @@ geom_linerange <- function(mapping = NULL, data = NULL, #' @usage NULL #' @export GeomLinerange <- ggproto("GeomLinerange", Geom, - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, alpha = NA), + + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + alpha = NA + ), draw_key = draw_key_linerange, diff --git a/R/geom-path.R b/R/geom-path.R index b63a1a1877..72c4f7154e 100644 --- a/R/geom-path.R +++ b/R/geom-path.R @@ -135,7 +135,12 @@ geom_path <- function(mapping = NULL, data = NULL, GeomPath <- ggproto("GeomPath", Geom, required_aes = c("x", "y"), - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, alpha = NA), + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + alpha = NA + ), non_missing_aes = c("linewidth", "colour", "linetype"), @@ -181,7 +186,7 @@ GeomPath <- ggproto("GeomPath", Geom, attr <- dapply(munched, "group", function(df) { linetype <- unique0(df$linetype) data_frame0( - solid = identical(linetype, 1) || identical(linetype, "solid"), + solid = length(linetype) == 1 && (identical(linetype, "solid") || linetype == 1), constant = nrow(unique0(df[, names(df) %in% c("alpha", "colour", "linewidth", "linetype")])) == 1, .size = 1 ) diff --git a/R/geom-point.R b/R/geom-point.R index 26e6705398..3efa394c31 100644 --- a/R/geom-point.R +++ b/R/geom-point.R @@ -135,8 +135,9 @@ GeomPoint <- ggproto("GeomPoint", Geom, required_aes = c("x", "y"), non_missing_aes = c("size", "shape", "colour"), default_aes = aes( - shape = 19, colour = "black", size = 1.5, fill = NA, - alpha = NA, stroke = 0.5 + shape = from_theme(pointshape), + colour = from_theme(ink), size = from_theme(pointsize), fill = NA, + alpha = NA, stroke = from_theme(borderwidth) ), draw_panel = function(self, data, panel_params, coord, na.rm = FALSE) { diff --git a/R/geom-pointrange.R b/R/geom-pointrange.R index ccecfc0d95..d0e5194311 100644 --- a/R/geom-pointrange.R +++ b/R/geom-pointrange.R @@ -30,8 +30,12 @@ geom_pointrange <- function(mapping = NULL, data = NULL, #' @usage NULL #' @export GeomPointrange <- ggproto("GeomPointrange", Geom, - default_aes = aes(colour = "black", size = 0.5, linewidth = 0.5, linetype = 1, - shape = 19, fill = NA, alpha = NA, stroke = 1), + default_aes = aes( + colour = from_theme(ink), size = from_theme(pointsize / 3), + linewidth = from_theme(linewidth), linetype = from_theme(linetype), + shape = from_theme(pointshape), fill = NA, alpha = NA, + stroke = from_theme(borderwidth * 2) + ), draw_key = draw_key_pointrange, diff --git a/R/geom-polygon.R b/R/geom-polygon.R index 8e812e2737..a271ef5011 100644 --- a/R/geom-polygon.R +++ b/R/geom-polygon.R @@ -175,8 +175,13 @@ GeomPolygon <- ggproto("GeomPolygon", Geom, } }, - default_aes = aes(colour = NA, fill = "grey20", linewidth = 0.5, linetype = 1, - alpha = NA, subgroup = NULL), + default_aes = aes( + colour = NA, + fill = from_theme(col_mix(ink, paper, 0.2)), + linewidth = from_theme(borderwidth), + linetype = from_theme(bordertype), + alpha = NA, subgroup = NULL + ), handle_na = function(data, params) { data diff --git a/R/geom-quantile.R b/R/geom-quantile.R index bb3ff581ab..732ab62f8a 100644 --- a/R/geom-quantile.R +++ b/R/geom-quantile.R @@ -66,7 +66,7 @@ geom_quantile <- function(mapping = NULL, data = NULL, #' @include geom-path.R GeomQuantile <- ggproto("GeomQuantile", GeomPath, default_aes = defaults( - aes(weight = 1, colour = "#3366FF", linewidth = 0.5), + aes(weight = 1, colour = from_theme(accent)), GeomPath$default_aes ) ) diff --git a/R/geom-raster.R b/R/geom-raster.R index 2d4ecd85d2..94b1775373 100644 --- a/R/geom-raster.R +++ b/R/geom-raster.R @@ -44,7 +44,7 @@ geom_raster <- function(mapping = NULL, data = NULL, #' @usage NULL #' @export GeomRaster <- ggproto("GeomRaster", Geom, - default_aes = aes(fill = "grey20", alpha = NA), + default_aes = aes(fill = from_theme(col_mix(ink, paper, 0.2)), alpha = NA), non_missing_aes = c("fill", "xmin", "xmax", "ymin", "ymax"), required_aes = c("x", "y"), diff --git a/R/geom-rect.R b/R/geom-rect.R index 0a9d4bdeed..8473474525 100644 --- a/R/geom-rect.R +++ b/R/geom-rect.R @@ -28,8 +28,11 @@ geom_rect <- function(mapping = NULL, data = NULL, #' @usage NULL #' @export GeomRect <- ggproto("GeomRect", Geom, - default_aes = aes(colour = NA, fill = "grey35", linewidth = 0.5, linetype = 1, - alpha = NA), + default_aes = aes( + colour = NA, fill = from_theme(col_mix(ink, paper, 0.35)), + linewidth = from_theme(borderwidth), linetype = from_theme(bordertype), + alpha = NA + ), required_aes = c("x|width|xmin|xmax", "y|height|ymin|ymax"), diff --git a/R/geom-ribbon.R b/R/geom-ribbon.R index 549320deb9..470c013eee 100644 --- a/R/geom-ribbon.R +++ b/R/geom-ribbon.R @@ -96,7 +96,11 @@ geom_ribbon <- function(mapping = NULL, data = NULL, #' @usage NULL #' @export GeomRibbon <- ggproto("GeomRibbon", Geom, - default_aes = aes(colour = NA, fill = "grey20", linewidth = 0.5, linetype = 1, + default_aes = aes( + colour = NA, + fill = from_theme(col_mix(ink, paper, 0.799)), + linewidth = from_theme(borderwidth), + linetype = from_theme(bordertype), alpha = NA), required_aes = c("x|y", "ymin|xmin", "ymax|xmax"), @@ -292,8 +296,14 @@ geom_area <- function(mapping = NULL, data = NULL, stat = "align", #' @usage NULL #' @export GeomArea <- ggproto("GeomArea", GeomRibbon, - default_aes = aes(colour = NA, fill = "grey20", linewidth = 0.5, linetype = 1, - alpha = NA), + + default_aes = aes( + colour = NA, + fill = from_theme(col_mix(ink, paper, 0.2)), + linewidth = from_theme(borderwidth), + linetype = from_theme(bordertype), + alpha = NA + ), required_aes = c("x", "y"), diff --git a/R/geom-rug.R b/R/geom-rug.R index eca79951d8..d675474f43 100644 --- a/R/geom-rug.R +++ b/R/geom-rug.R @@ -153,7 +153,12 @@ GeomRug <- ggproto("GeomRug", Geom, gTree(children = inject(gList(!!!rugs))) }, - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, alpha = NA), + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + alpha = NA + ), draw_key = draw_key_path, diff --git a/R/geom-segment.R b/R/geom-segment.R index 303a040337..00d9eff87a 100644 --- a/R/geom-segment.R +++ b/R/geom-segment.R @@ -104,7 +104,14 @@ geom_segment <- function(mapping = NULL, data = NULL, GeomSegment <- ggproto("GeomSegment", Geom, required_aes = c("x", "y", "xend|yend"), non_missing_aes = c("linetype", "linewidth"), - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, alpha = NA), + + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + alpha = NA + ), + draw_panel = function(self, data, panel_params, coord, arrow = NULL, arrow.fill = NULL, lineend = "butt", linejoin = "round", na.rm = FALSE) { data$xend <- data$xend %||% data$x diff --git a/R/geom-sf.R b/R/geom-sf.R index 457b8c272d..2e9aee78b8 100644 --- a/R/geom-sf.R +++ b/R/geom-sf.R @@ -126,14 +126,17 @@ GeomSf <- ggproto("GeomSf", Geom, fill = NULL, size = NULL, linewidth = NULL, - linetype = 1, + linetype = from_theme(linetype), alpha = NA, stroke = 0.5 ), use_defaults = function(self, data, params = list(), modifiers = aes(), - default_aes = NULL, ...) { - data <- ggproto_parent(Geom, self)$use_defaults(data, params, modifiers, default_aes) + default_aes = NULL, theme = NULL, ...) { + data <- ggproto_parent(Geom, self)$use_defaults( + data, params, modifiers, default_aes, theme = theme, ... + ) + # Early exit for e.g. legend data that don't have geometry columns if (!"geometry" %in% names(data)) { return(data) } @@ -156,24 +159,29 @@ GeomSf <- ggproto("GeomSf", Geom, if (length(index$point) > 0) { points <- GeomPoint$use_defaults( vec_slice(data, index$point), - params, modifiers + params, modifiers, theme = theme ) } if (length(index$line) > 0) { lines <- GeomLine$use_defaults( vec_slice(data, index$line), - params, modifiers + params, modifiers, theme = theme ) } other_default <- modify_list( GeomPolygon$default_aes, - list(fill = "grey90", colour = "grey35", linewidth = 0.2) + aes( + fill = from_theme(col_mix(ink, paper, 0.9)), + colour = from_theme(col_mix(ink, paper, 0.35)), + linewidth = from_theme(0.4 * borderwidth) + ) ) if (length(index$other) > 0) { others <- GeomPolygon$use_defaults( vec_slice(data, index$other), params, modifiers, - default_aes = other_default + default_aes = other_default, + theme = theme ) } if (length(index$collection) > 0) { @@ -185,7 +193,8 @@ GeomSf <- ggproto("GeomSf", Geom, collections <- Geom$use_defaults( vec_slice(data, index$collection), params, modifiers, - default_aes = modified + default_aes = modified, + theme = theme ) } diff --git a/R/geom-smooth.R b/R/geom-smooth.R index 8874ef491c..08e1099df0 100644 --- a/R/geom-smooth.R +++ b/R/geom-smooth.R @@ -168,8 +168,13 @@ GeomSmooth <- ggproto("GeomSmooth", Geom, required_aes = c("x", "y"), optional_aes = c("ymin", "ymax"), - default_aes = aes(colour = "#3366FF", fill = "grey60", linewidth = 1, - linetype = 1, weight = 1, alpha = 0.4), + default_aes = aes( + colour = from_theme(accent), + fill = from_theme(col_mix(ink, paper, 0.6)), + linewidth = from_theme(2 * linewidth), + linetype = from_theme(linetype), + weight = 1, alpha = 0.4 + ), rename_size = TRUE ) diff --git a/R/geom-text.R b/R/geom-text.R index a913227e4b..b7f0d3f320 100644 --- a/R/geom-text.R +++ b/R/geom-text.R @@ -216,8 +216,11 @@ GeomText <- ggproto("GeomText", Geom, non_missing_aes = "angle", default_aes = aes( - colour = "black", size = 3.88, angle = 0, hjust = 0.5, - vjust = 0.5, alpha = NA, family = "", fontface = 1, lineheight = 1.2 + colour = from_theme(ink), + family = from_theme(family), + size = from_theme(fontsize), + angle = 0, hjust = 0.5, + vjust = 0.5, alpha = NA, fontface = 1, lineheight = 1.2 ), draw_panel = function(data, panel_params, coord, parse = FALSE, diff --git a/R/geom-tile.R b/R/geom-tile.R index a5e3232080..e7bb6bc9e3 100644 --- a/R/geom-tile.R +++ b/R/geom-tile.R @@ -110,7 +110,7 @@ GeomTile <- ggproto("GeomTile", GeomRect, extra_params = c("na.rm"), setup_data = function(data, params) { - + data$width <- data$width %||% params$width %||% stats::ave(data$x, data$PANEL, FUN = function(x) resolution(x, FALSE, TRUE)) data$height <- data$height %||% params$height %||% @@ -122,8 +122,13 @@ GeomTile <- ggproto("GeomTile", GeomRect, ) }, - default_aes = aes(fill = "grey20", colour = NA, linewidth = 0.1, linetype = 1, - alpha = NA, width = NA, height = NA), + default_aes = aes( + fill = from_theme(col_mix(ink, paper, 0.2)), + colour = NA, + linewidth = from_theme(0.4 * borderwidth), + linetype = from_theme(bordertype), + alpha = NA, width = NA, height = NA + ), required_aes = c("x", "y"), diff --git a/R/geom-violin.R b/R/geom-violin.R index 0ac6cd29df..17a2d40e94 100644 --- a/R/geom-violin.R +++ b/R/geom-violin.R @@ -197,8 +197,14 @@ GeomViolin <- ggproto("GeomViolin", Geom, draw_key = draw_key_polygon, - default_aes = aes(weight = 1, colour = "grey20", fill = "white", linewidth = 0.5, - alpha = NA, linetype = "solid"), + default_aes = aes( + weight = 1, + colour = from_theme(col_mix(ink, paper, 0.2)), + fill = from_theme(paper), + linewidth = from_theme(borderwidth), + linetype = from_theme(bordertype), + alpha = NA + ), required_aes = c("x", "y"), diff --git a/R/geom-vline.R b/R/geom-vline.R index 85cacf3e63..a9a50e6ff3 100644 --- a/R/geom-vline.R +++ b/R/geom-vline.R @@ -56,7 +56,13 @@ GeomVline <- ggproto("GeomVline", Geom, GeomSegment$draw_panel(unique0(data), panel_params, coord, lineend = lineend) }, - default_aes = aes(colour = "black", linewidth = 0.5, linetype = 1, alpha = NA), + default_aes = aes( + colour = from_theme(ink), + linewidth = from_theme(linewidth), + linetype = from_theme(linetype), + alpha = NA + ), + required_aes = "xintercept", draw_key = draw_key_vline, diff --git a/R/guide-.R b/R/guide-.R index 1856394ee3..4cb77ee7bb 100644 --- a/R/guide-.R +++ b/R/guide-.R @@ -265,11 +265,11 @@ Guide <- ggproto( # Function for extracting information from the layers. # Mostly applies to `guide_legend()` and `guide_binned()` - process_layers = function(self, params, layers, data = NULL) { - self$get_layer_key(params, layers, data) + process_layers = function(self, params, layers, data = NULL, theme = NULL) { + self$get_layer_key(params, layers, data, theme) }, - get_layer_key = function(params, layers, data = NULL) { + get_layer_key = function(params, layers, data = NULL, theme = NULL) { return(params) }, diff --git a/R/guide-axis-stack.R b/R/guide-axis-stack.R index b11a969b8f..74fe2b2b3a 100644 --- a/R/guide-axis-stack.R +++ b/R/guide-axis-stack.R @@ -134,7 +134,7 @@ GuideAxisStack <- ggproto( }, # Just loops through guides - get_layer_key = function(params, layers) { + get_layer_key = function(params, layers, ...) { for (i in seq_along(params$guides)) { params$guide_params[[i]] <- params$guides[[i]]$get_layer_key( params = params$guide_params[[i]], diff --git a/R/guide-colorbar.R b/R/guide-colorbar.R index 5154c67c07..d03484edae 100644 --- a/R/guide-colorbar.R +++ b/R/guide-colorbar.R @@ -269,7 +269,7 @@ GuideColourbar <- ggproto( return(list(guide = self, params = params)) }, - get_layer_key = function(params, layers, data = NULL) { + get_layer_key = function(params, layers, data = NULL, theme = NULL) { params }, diff --git a/R/guide-legend.R b/R/guide-legend.R index 6e3524b5bd..6f0b98ac33 100644 --- a/R/guide-legend.R +++ b/R/guide-legend.R @@ -209,7 +209,7 @@ GuideLegend <- ggproto( }, # Arrange common data for vertical and horizontal legends - process_layers = function(self, params, layers, data = NULL) { + process_layers = function(self, params, layers, data = NULL, theme = NULL) { include <- vapply(layers, function(layer) { aes <- matched_aes(layer, params) @@ -220,10 +220,10 @@ GuideLegend <- ggproto( return(NULL) } - self$get_layer_key(params, layers[include], data[include]) + self$get_layer_key(params, layers[include], data[include], theme) }, - get_layer_key = function(params, layers, data) { + get_layer_key = function(params, layers, data, theme = NULL) { # Return empty guides as-is if (nrow(params$key) < 1) { @@ -242,7 +242,7 @@ GuideLegend <- ggproto( single_params <- layer$aes_params[single_params] # Use layer to populate defaults - key <- layer$compute_geom_2(key, single_params) + key <- layer$compute_geom_2(key, single_params, theme) # Filter non-existing levels if (length(matched_aes) > 0) { diff --git a/R/guide-old.R b/R/guide-old.R index b2a137fffd..de870965fd 100644 --- a/R/guide-old.R +++ b/R/guide-old.R @@ -103,7 +103,7 @@ GuideOld <- ggproto( guide_transform(params, coord, panel_params) }, - process_layers = function(self, params, layers, data = NULL) { + process_layers = function(self, params, layers, data = NULL, theme = NULL) { guide_geom(params, layers, default_mapping = NULL) }, diff --git a/R/guides-.R b/R/guides-.R index d45f55e892..fcd65bb94a 100644 --- a/R/guides-.R +++ b/R/guides-.R @@ -285,7 +285,7 @@ Guides <- ggproto( # # The resulting guide is then drawn in ggplot_gtable - build = function(self, scales, layers, labels, layer_data) { + build = function(self, scales, layers, labels, layer_data, theme) { # Empty guides list custom <- self$get_custom() @@ -312,7 +312,7 @@ Guides <- ggproto( # Merge and process layers guides$merge() - guides$process_layers(layers, layer_data) + guides$process_layers(layers, layer_data, theme) if (length(guides$guides) == 0) { return(no_guides) } @@ -460,9 +460,9 @@ Guides <- ggproto( }, # Loop over guides to let them extract information from layers - process_layers = function(self, layers, data = NULL) { + process_layers = function(self, layers, data = NULL, theme = NULL) { self$params <- Map( - function(guide, param) guide$process_layers(param, layers, data), + function(guide, param) guide$process_layers(param, layers, data, theme), guide = self$guides, param = self$params ) diff --git a/R/layer-sf.R b/R/layer-sf.R index 437ecef3df..3a282e734f 100644 --- a/R/layer-sf.R +++ b/R/layer-sf.R @@ -72,6 +72,7 @@ LayerSf <- ggproto("LayerSf", Layer, }, compute_geom_2 = function(self, data, params = self$aes_params, ...) { + if (empty(data)) return(data) data$geometry <- data$geometry %||% self$computed_geom_params$legend ggproto_parent(Layer, self)$compute_geom_2(data, params, ...) } diff --git a/R/layer.R b/R/layer.R index eba8666de4..8acb438c9e 100644 --- a/R/layer.R +++ b/R/layer.R @@ -293,8 +293,9 @@ Layer <- ggproto("Layer", NULL, set <- names(aesthetics) %in% names(self$aes_params) calculated <- is_calculated_aes(aesthetics, warn = TRUE) modifiers <- is_scaled_aes(aesthetics) + themed <- is_themed_aes(aesthetics) - aesthetics <- aesthetics[!set & !calculated & !modifiers] + aesthetics <- aesthetics[!set & !calculated & !modifiers & !themed] # Override grouping if set in layer if (!is.null(self$geom_params$group)) { @@ -442,14 +443,14 @@ Layer <- ggproto("Layer", NULL, self$position$compute_layer(data, params, layout) }, - compute_geom_2 = function(self, data, params = self$aes_params, ...) { + compute_geom_2 = function(self, data, params = self$aes_params, theme = NULL, ...) { # Combine aesthetics, defaults, & params if (empty(data)) return(data) aesthetics <- self$computed_mapping - modifiers <- aesthetics[is_scaled_aes(aesthetics) | is_staged_aes(aesthetics)] + modifiers <- aesthetics[is_scaled_aes(aesthetics) | is_staged_aes(aesthetics) | is_themed_aes(aesthetics)] - self$geom$use_defaults(data, params, modifiers, ...) + self$geom$use_defaults(data, params, modifiers, theme = theme, ...) }, finish_statistics = function(self, data) { diff --git a/R/plot-build.R b/R/plot-build.R index 23d2a11b0f..36f33616fd 100644 --- a/R/plot-build.R +++ b/R/plot-build.R @@ -100,11 +100,14 @@ ggplot_build.ggplot <- function(plot) { # Hand off position guides to layout layout$setup_panel_guides(plot$guides, plot$layers) + # Complete the plot's theme + plot$theme <- plot_theme(plot) + # Train and map non-position scales and guides npscales <- scales$non_position_scales() if (npscales$n() > 0) { lapply(data, npscales$train_df) - plot$guides <- plot$guides$build(npscales, plot$layers, plot$labels, data) + plot$guides <- plot$guides$build(npscales, plot$layers, plot$labels, data, plot$theme) data <- lapply(data, npscales$map_df) } else { # Only keep custom guides if there are no non-position scales @@ -113,7 +116,10 @@ ggplot_build.ggplot <- function(plot) { data <- .expose_data(data) # Fill in defaults etc. - data <- by_layer(function(l, d) l$compute_geom_2(d), layers, data, "setting up geom aesthetics") + data <- by_layer( + function(l, d) l$compute_geom_2(d, theme = plot$theme), + layers, data, "setting up geom aesthetics" + ) # Let layer stat have a final say before rendering data <- by_layer(function(l, d) l$finish_statistics(d), layers, data, "finishing layer stat") @@ -199,7 +205,7 @@ ggplot_gtable.ggplot_built <- function(data) { plot <- data$plot layout <- data$layout data <- data$data - theme <- plot_theme(plot) + theme <- plot$theme geom_grobs <- by_layer(function(l, d) l$draw_geom(d, layout), plot$layers, data, "converting geom to grob") diff --git a/R/theme-defaults.R b/R/theme-defaults.R index 522c978c68..77b36e243e 100644 --- a/R/theme-defaults.R +++ b/R/theme-defaults.R @@ -143,6 +143,14 @@ theme_grey <- function(base_size = 11, base_family = "", spacing = unit(half_line, "pt"), margins = margin(half_line, half_line, half_line, half_line), + geom = element_geom( + ink = "black", paper = "white", accent = "#3366FF", + linewidth = base_line_size, borderwidth = base_line_size, + linetype = 1L, bordertype = 1L, + family = base_family, fontsize = base_size, + pointsize = (base_size / 11) * 1.5, pointshape = 19 + ), + axis.line = element_blank(), axis.line.x = NULL, axis.line.y = NULL, @@ -576,6 +584,14 @@ theme_test <- function(base_size = 11, base_family = "", title = element_text(family = header_family), spacing = unit(half_line, "pt"), margins = margin(half_line, half_line, half_line, half_line), + geom = element_geom( + ink = "black", paper = "white", accent = "#3366FF", + linewidth = base_line_size, borderwidth = base_line_size, + family = base_family, fontsize = base_size, + linetype = 1L, + pointsize = (base_size / 11) * 1.5, pointshape = 19 + ), + axis.line = element_blank(), axis.line.x = NULL, axis.line.y = NULL, diff --git a/R/theme-elements.R b/R/theme-elements.R index 4a0bfce774..747bb0cf78 100644 --- a/R/theme-elements.R +++ b/R/theme-elements.R @@ -8,14 +8,15 @@ #' - `element_rect()`: borders and backgrounds. #' - `element_line()`: lines. #' - `element_text()`: text. +#' - `element_geom()`: defaults for drawing layers. #' #' `rel()` is used to specify sizes relative to the parent, #' `margin()` is used to specify the margins of elements. #' #' @param fill Fill colour. #' @param colour,color Line/border colour. Color is an alias for colour. -#' @param linewidth Line/border size in mm. -#' @param size text size in pts. +#' @param linewidth,borderwidth Line/border size in mm. +#' @param size,fontsize text size in pts. #' @param arrow.fill Fill colour for arrows. #' @param inherit.blank Should this element inherit the existence of an #' `element_blank` among its parents? If `TRUE` the existence of @@ -48,6 +49,14 @@ #' linewidth = 1 #' ) #' ) +#' +#' ggplot(mpg, aes(displ, hwy)) + +#' geom_point() + +#' geom_smooth(formula = y ~ x, method = "lm") + +#' theme(geom = element_geom( +#' ink = "red", accent = "black", +#' pointsize = 1, linewidth = 2 +#' )) #' @name element #' @aliases NULL NULL @@ -81,10 +90,10 @@ element_rect <- function(fill = NULL, colour = NULL, linewidth = NULL, #' @export #' @rdname element -#' @param linetype Line type. An integer (0:8), a name (blank, solid, -#' dashed, dotted, dotdash, longdash, twodash), or a string with -#' an even number (up to eight) of hexadecimal digits which give the -#' lengths in consecutive positions in the string. +#' @param linetype,bordertype Line type for lines and borders respectively. An +#' integer (0:8), a name (blank, solid, dashed, dotted, dotdash, longdash, +#' twodash), or a string with an even number (up to eight) of hexadecimal +#' digits which give the lengths in consecutive positions in the string. #' @param lineend Line end Line end style (round, butt, square) #' @param arrow Arrow specification, as created by [grid::arrow()] element_line <- function(colour = NULL, linewidth = NULL, linetype = NULL, @@ -148,6 +157,50 @@ element_text <- function(family = NULL, face = NULL, colour = NULL, ) } +#' @param ink Foreground colour. +#' @param paper Background colour. +#' @param accent Accent colour. +#' @param pointsize Size for points in mm. +#' @param pointshape Shape for points (1-25). +#' @export +#' @rdname element +element_geom <- function( + # colours + ink = NULL, paper = NULL, accent = NULL, + # linewidth + linewidth = NULL, borderwidth = NULL, + # linetype + linetype = NULL, bordertype = NULL, + # text + family = NULL, fontsize = NULL, + # points + pointsize = NULL, pointshape = NULL) { + + if (!is.null(fontsize)) { + fontsize <- fontsize / .pt + } + + structure( + list( + ink = ink, + paper = paper, + accent = accent, + linewidth = linewidth, borderwidth = borderwidth, + linetype = linetype, bordertype = bordertype, + family = family, fontsize = fontsize, + pointsize = pointsize, pointshape = pointshape + ), + class = c("element_geom", "element") + ) +} + +.default_geom_element <- element_geom( + ink = "black", paper = "white", accent = "#3366FF", + linewidth = 0.5, borderwidth = 0.5, + linetype = 1L, bordertype = 1L, + family = "", fontsize = 11, + pointsize = 1.5, pointshape = 19 +) #' @export print.element <- function(x, ...) utils::str(x) @@ -429,6 +482,7 @@ el_def <- function(class = NULL, inherit = NULL, description = NULL) { line = el_def("element_line"), rect = el_def("element_rect"), text = el_def("element_text"), + geom = el_def("element_geom"), title = el_def("element_text", "text"), spacing = el_def("unit"), margins = el_def(c("margin", "unit")), diff --git a/R/theme.R b/R/theme.R index 7e8a794a11..43c379f9b6 100644 --- a/R/theme.R +++ b/R/theme.R @@ -25,6 +25,7 @@ #' @param text all text elements ([element_text()]) #' @param title all title elements: plot, axes, legends ([element_text()]; #' inherits from `text`) +#' @param geom defaults for geoms ([element_geom()]) #' @param spacing all spacings ([`unit()`][grid::unit]) #' @param margins all margins ([margin()]) #' @param aspect.ratio aspect ratio of the panel @@ -315,6 +316,7 @@ theme <- function(..., rect, text, title, + geom, spacing, margins, aspect.ratio, diff --git a/R/utilities.R b/R/utilities.R index 6a7ca5921d..2585de5acc 100644 --- a/R/utilities.R +++ b/R/utilities.R @@ -843,6 +843,24 @@ as_unordered_factor <- function(x) { x } +# Shim for scales/#424 +col_mix <- function(a, b, amount = 0.5) { + input <- vec_recycle_common(a = a, b = b, amount = amount) + a <- grDevices::col2rgb(input$a, TRUE) + b <- grDevices::col2rgb(input$b, TRUE) + new <- (a * (1 - input$amount) + b * input$amount) + grDevices::rgb( + new["red", ], new["green", ], new["blue", ], + alpha = new["alpha", ], maxColorValue = 255 + ) +} + +on_load({ + if ("col_mix" %in% getNamespaceExports("scales")) { + col_mix <- scales::col_mix + } +}) + # TODO: Replace me if rlang/#1730 gets implemented # Similar to `rlang::check_installed()` but returns boolean and misses # features such as versions, comparisons and using {pak}. diff --git a/man/aes_eval.Rd b/man/aes_eval.Rd index 827bc6a876..11b8d2f1bd 100644 --- a/man/aes_eval.Rd +++ b/man/aes_eval.Rd @@ -5,6 +5,7 @@ \alias{after_stat} \alias{stat} \alias{after_scale} +\alias{from_theme} \alias{stage} \title{Control aesthetic evaluation} \usage{ @@ -16,6 +17,8 @@ after_stat(x) after_scale(x) +from_theme(x) + stage(start = NULL, after_stat = NULL, after_scale = NULL) } \arguments{ @@ -127,6 +130,14 @@ ggplot(mpg, aes(class, displ)) + ) }\if{html}{\out{}} } + +\subsection{Theme access}{ + +The \code{from_theme()} function can be used to acces the \code{\link[=element_geom]{element_geom()}} +fields of the \code{theme(geom)} argument. Using \code{aes(colour = from_theme(ink))} +and \code{aes(colour = from_theme(accent))} allows swapping between foreground and +accent colours. +} } \examples{ diff --git a/man/element.Rd b/man/element.Rd index 2a4f68e2eb..adb1b7eb22 100644 --- a/man/element.Rd +++ b/man/element.Rd @@ -5,6 +5,7 @@ \alias{element_rect} \alias{element_line} \alias{element_text} +\alias{element_geom} \alias{rel} \alias{margin} \title{Theme elements} @@ -48,6 +49,20 @@ element_text( inherit.blank = FALSE ) +element_geom( + ink = NULL, + paper = NULL, + accent = NULL, + linewidth = NULL, + borderwidth = NULL, + linetype = NULL, + bordertype = NULL, + family = NULL, + fontsize = NULL, + pointsize = NULL, + pointshape = NULL +) + rel(x) margin(t = 0, r = 0, b = 0, l = 0, unit = "pt") @@ -57,12 +72,12 @@ margin(t = 0, r = 0, b = 0, l = 0, unit = "pt") \item{colour, color}{Line/border colour. Color is an alias for colour.} -\item{linewidth}{Line/border size in mm.} +\item{linewidth, borderwidth}{Line/border size in mm.} -\item{linetype}{Line type. An integer (0:8), a name (blank, solid, -dashed, dotted, dotdash, longdash, twodash), or a string with -an even number (up to eight) of hexadecimal digits which give the -lengths in consecutive positions in the string.} +\item{linetype, bordertype}{Line type for lines and borders respectively. An +integer (0:8), a name (blank, solid, dashed, dotted, dotdash, longdash, +twodash), or a string with an even number (up to eight) of hexadecimal +digits which give the lengths in consecutive positions in the string.} \item{inherit.blank}{Should this element inherit the existence of an \code{element_blank} among its parents? If \code{TRUE} the existence of @@ -70,7 +85,7 @@ a blank element among its parents will cause this element to be blank as well. If \code{FALSE} any blank parent element will be ignored when calculating final element state.} -\item{size}{text size in pts.} +\item{size, fontsize}{text size in pts.} \item{lineend}{Line end Line end style (round, butt, square)} @@ -98,6 +113,16 @@ side of the text facing towards the center of the plot.} rectangle behind the complete text area, and a point where each label is anchored.} +\item{ink}{Foreground colour.} + +\item{paper}{Background colour.} + +\item{accent}{Accent colour.} + +\item{pointsize}{Size for points in mm.} + +\item{pointshape}{Shape for points (1-25).} + \item{x}{A single number specifying size relative to parent element.} \item{t, r, b, l}{Dimensions of each margin. (To remember order, think trouble).} @@ -116,6 +141,7 @@ specify the display of how non-data components of the plot are drawn. \item \code{element_rect()}: borders and backgrounds. \item \code{element_line()}: lines. \item \code{element_text()}: text. +\item \code{element_geom()}: defaults for drawing layers. } \code{rel()} is used to specify sizes relative to the parent, @@ -146,4 +172,12 @@ plot + theme( linewidth = 1 ) ) + +ggplot(mpg, aes(displ, hwy)) + + geom_point() + + geom_smooth(formula = y ~ x, method = "lm") + + theme(geom = element_geom( + ink = "red", accent = "black", + pointsize = 1, linewidth = 2 + )) } diff --git a/man/geom_boxplot.Rd b/man/geom_boxplot.Rd index 918b082d4b..3fc39d212b 100644 --- a/man/geom_boxplot.Rd +++ b/man/geom_boxplot.Rd @@ -15,8 +15,8 @@ geom_boxplot( outlier.colour = NULL, outlier.color = NULL, outlier.fill = NULL, - outlier.shape = 19, - outlier.size = 1.5, + outlier.shape = NULL, + outlier.size = NULL, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, diff --git a/man/get_geom_defaults.Rd b/man/get_geom_defaults.Rd new file mode 100644 index 0000000000..a39f80d720 --- /dev/null +++ b/man/get_geom_defaults.Rd @@ -0,0 +1,43 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/geom-defaults.R +\name{get_geom_defaults} +\alias{get_geom_defaults} +\title{Resolve and get geom defaults} +\usage{ +get_geom_defaults(geom, theme = theme_get()) +} +\arguments{ +\item{geom}{Some definition of a geom: +\itemize{ +\item A \code{function} that creates a layer, e.g. \code{geom_path()}. +\item A layer created by such function +\item A string naming a geom class in snake case without the \code{geom_}-prefix, +e.g. \code{"contour_filled"}. +\item A geom class object. +}} + +\item{theme}{A \code{\link{theme}} object. Defaults to the current global theme.} +} +\value{ +A list of aesthetics +} +\description{ +Resolve and get geom defaults +} +\examples{ +# Using a function +get_geom_defaults(geom_raster) + +# Using a layer includes static aesthetics as default +get_geom_defaults(geom_tile(fill = "white")) + +# Using a class name +get_geom_defaults("density_2d") + +# Using a class +get_geom_defaults(GeomPoint) + +# Changed theme +get_geom_defaults("point", theme(geom = element_geom(ink = "purple"))) +} +\keyword{internal} diff --git a/man/theme.Rd b/man/theme.Rd index 1f12df3ba9..829254ecdf 100644 --- a/man/theme.Rd +++ b/man/theme.Rd @@ -10,6 +10,7 @@ theme( rect, text, title, + geom, spacing, margins, aspect.ratio, @@ -161,6 +162,8 @@ these should also be defined in the \verb{element tree} argument. \link[rlang:sp \item{title}{all title elements: plot, axes, legends (\code{\link[=element_text]{element_text()}}; inherits from \code{text})} +\item{geom}{defaults for geoms (\code{\link[=element_geom]{element_geom()}})} + \item{spacing}{all spacings (\code{\link[grid:unit]{unit()}})} \item{margins}{all margins (\code{\link[=margin]{margin()}})} diff --git a/man/update_defaults.Rd b/man/update_defaults.Rd index 334dffed8e..777182e24f 100644 --- a/man/update_defaults.Rd +++ b/man/update_defaults.Rd @@ -29,6 +29,10 @@ reset_stat_defaults() \description{ Functions to update or reset the default aesthetics of geoms and stats. } +\note{ +Please note that geom defaults can be set \emph{en masse} via the \code{theme(geom)} +argument. +} \examples{ # updating a geom's default aesthetic settings diff --git a/revdep/README.md b/revdep/README.md index d6c6b43f5e..8976e81c90 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,68 +1,57 @@ # Revdeps -## Failed to check (146) +## Failed to check (132) |package |version |error |warning |note | |:----------------------|:----------|:------|:-------|:----| |abctools |1.1.7 |1 | | | -|AnanseSeurat |? | | | | |animalEKF |1.2 |1 | | | |ANOM |0.5 |1 | | | -|APackOfTheClones |? | | | | |atRisk |0.1.0 |1 | | | |AutoScore |1.0.0 |1 | | | |bayesdfa |1.3.3 |1 | | | |bayesDP |1.3.6 |1 | | | |BayesianFactorZoo |0.0.0.2 |1 | | | -|BCClong |1.0.2 |1 | |1 | +|BayesSurvive |0.0.2 |1 | | | +|BCClong |1.0.3 |1 | | | +|BGGM |2.1.3 |1 | | | |binsreg |1.0 |1 | | | |bmstdr |0.7.9 |1 | | | |bspcov |1.0.0 |1 | | | -|CalibrationCurves |2.0.1 |1 | | | -|Canek |? | | | | +|BuyseTest |3.0.4 |1 | | | +|CalibrationCurves |2.0.3 |1 | | | |CARBayesST |4.0 |1 | | | |CaseBasedReasoning |0.3 |1 | | | -|cellpypes |? | | | | |CGPfunctions |0.6.3 |1 | | | -|CIARA |? | | | | -|ClustAssess |? | | | | -|clustree |? | | | | |cmprskcoxmsm |0.2.1 |1 | | | -|combiroc |? | | | | -|conos |? | | | | |contrast |0.24.2 |1 | | | -|countland |? | | | | |coxed |0.3.3 |1 | | | -|CRMetrics |? | | | | +|CRMetrics |0.3.0 |1 | | | |csmpv |1.0.3 |1 | | | |ctsem |3.10.0 |1 | | | -|CytoSimplex |? | | | | |DepthProc |2.1.5 |1 | | | -|DIscBIO |? | | | | -|DR.SC |? | | | | -|dyngen |? | | | | -|EcoEnsemble |1.0.5 |1 | | | +|DR.SC |3.4 |1 | | | +|DynNom |5.1 |1 | | | +|easybgm |0.1.2 |1 | | | |ecolottery |1.0.0 |1 | | | |EpiEstim |2.2-4 |1 | | | |evolqg |0.3-4 |1 | | | |ForecastComb |1.3.1 |1 | | | |gapfill |0.9.6-1 |1 | |1 | |GeomComb |1.0 |1 | | | -|[geostan](failures.md#geostan)|0.6.1 |__+1__ | |-3 | -|ggrcs |0.3.8 |1 | | | +|ggrcs |0.4.0 |1 | | | |ggrisk |1.3 |1 | | | -|ggsector |? | | | | |gJLS2 |0.2.0 |1 | | | -|grandR |? | | | | |Greg |2.0.2 |1 | | | |greport |0.7-4 |1 | | | -|harmony |? | | | | |hettx |0.1.3 |1 | | | |hIRT |0.3.0 |1 | | | |Hmsc |3.0-13 |1 | | | +|[inventorize](failures.md#inventorize)|1.1.1 |__+1__ | | | |iNZightPlots |2.15.3 |1 | | | |iNZightRegression |1.3.4 |1 | | | |IRexamples |0.0.4 |1 | | | +|jmBIG |0.1.2 |1 | | | |joineRML |0.4.6 |1 | | | |JWileymisc |1.4.1 |1 | | | |kmc |0.4-2 |1 | | | @@ -74,11 +63,10 @@ |MendelianRandomization |0.10.0 |1 | | | |MetabolicSurv |1.1.2 |1 | | | |miWQS |0.4.4 |1 | | | -|mlmts |1.1.1 |1 | | | |MRZero |0.2.0 |1 | | | |Multiaovbay |0.1.0 |1 | | | |multilevelTools |0.1.1 |1 | | | -|multinma |0.7.0 |1 | | | +|multinma |0.7.1 |1 | | | |NCA |4.0.1 |1 | | | |netcmc |1.0.2 |1 | | | |NetworkChange |0.8 |1 | | | @@ -92,11 +80,12 @@ |pould |1.0.1 |1 | | | |powerly |1.8.6 |1 | | | |pre |1.0.7 |1 | | | -|PRECAST |? | | | | |ProFAST |? | | | | +|psbcSpeedUp |2.0.7 |1 | | | |pscore |0.4.0 |1 | | | |psfmi |1.4.0 |1 | | | -|qreport |1.0-0 |1 | | | +|qPCRtools |1.0.1 |1 | | | +|qreport |1.0-1 |1 | | | |qris |1.1.1 |1 | | | |qte |1.3.1 |1 | | | |quid |0.0.1 |1 | | | @@ -104,35 +93,33 @@ |RcmdrPlugin.RiskDemo |3.2 |1 | | | |rddtools |1.6.0 |1 | | | |riskRegression |2023.12.21 |1 | | | -|rliger |? | | | | -|rms |6.8-0 |1 | |1 | -|rmsb |1.1-0 |1 | | | +|rms |6.8-1 |1 | |1 | +|rmsb |1.1-1 |1 | | | |robmed |1.0.2 |1 | | | |robmedExtra |0.1.0 |1 | | | |RPPanalyzer |1.4.9 |1 | | | -|rstanarm |2.32.1 |1 | | | -|scCustomize |? | | | | -|SCdeconR |? | | | | -|scDiffCom |? | | | | -|scGate |? | | | | -|scMappR |? | | | | -|SCORPIUS |? | | | | -|scpoisson |? | | | | -|SCpubr |? | | | | -|scRNAstat |? | | | | +|RQdeltaCT |1.3.0 |1 | | | +|scCustomize |2.1.2 |1 | |1 | +|SCdeconR |1.0.0 |1 | | | +|scGate |1.6.2 |1 | | | +|SCIntRuler |0.99.6 |1 | | | +|scMappR |1.0.11 |1 | | | +|scpi |2.2.5 |1 | | | +|scRNAstat |0.1.1 |1 | | | |sectorgap |0.1.0 |1 | | | |SEERaBomb |2019.2 |1 | | | |semicmprskcoxmsm |0.2.0 |1 | | | |SensMap |0.7 |1 | | | -|Signac |? | | | | +|Seurat |5.1.0 |1 | | | +|shinyTempSignal |0.0.8 |1 | | | +|sievePH |1.1 |1 | | | +|Signac |1.13.0 |1 | | | |SimplyAgree |0.2.0 |1 | | | |sMSROC |0.1.2 |1 | | | |SNPassoc |2.1-0 |1 | | | |snplinkage |? | | | | -|SoupX |? | | | | -|SpaDES.core |2.0.5 |1 | | | +|SoupX |1.6.2 |1 | | | |sparsereg |1.2 |1 | | | -|SPECK |? | | | | |spikeSlabGAM |1.1-19 |1 | | | |statsr |0.3.0 |1 | | | |streamDAG |? | | | | @@ -141,82 +128,259 @@ |tempted |0.1.1 |1 | | | |[tidydr](failures.md#tidydr)|0.0.5 |__+1__ | | | |tidyEdSurvey |0.1.3 |1 | | | -|tidyseurat |? | | | | +|tidyseurat |0.8.0 |1 | | | |tidyvpc |1.5.1 |1 | | | -|treefit |? | | | | |TriDimRegression |1.0.2 |1 | | | |TSrepr |1.1.0 |1 | | | |twang |2.6 |1 | | | -|valse |0.1-0 |1 | | | |vdg |1.2.3 |1 | | | +|visa |0.1.0 |1 | | | |WRTDStidal |1.1.4 |1 | | | -## New problems (64) +## New problems (242) -|package |version |error |warning |note | -|:---------------|:--------|:--------|:--------|:--------| -|[asmbPLS](problems.md#asmbpls)|1.0.0 | |__+1__ |1 | -|[bdl](problems.md#bdl)|1.0.5 | |__+1__ | | -|[bdscale](problems.md#bdscale)|2.0.0 |__+1__ | |__+1__ | -|[biclustermd](problems.md#biclustermd)|0.2.3 |__+1__ | |1 | -|[brolgar](problems.md#brolgar)|1.0.1 |__+2__ | |__+1__ | -|[bSi](problems.md#bsi)|1.0.0 | |__+1__ | | -|[CausalImpact](problems.md#causalimpact)|1.3.0 |__+2__ | |__+1__ | -|[ClusROC](problems.md#clusroc)|1.0.2 | |__+1__ | | -|[clustEff](problems.md#clusteff)|0.3.1 | |__+1__ | | -|[CLVTools](problems.md#clvtools)|0.10.0 |__+1__ | |1 __+1__ | -|[coda4microbiome](problems.md#coda4microbiome)|0.2.3 | |__+1__ | | -|[CompAREdesign](problems.md#comparedesign)|2.3.1 | |__+1__ | | -|[covidcast](problems.md#covidcast)|0.5.2 |__+2__ | |1 __+1__ | -|[Coxmos](problems.md#coxmos)|1.0.2 |1 |__+1__ |1 | -|[csa](problems.md#csa)|0.7.1 | |__+1__ | | -|[deeptime](problems.md#deeptime)|1.1.1 |__+2__ | | | -|[DEGRE](problems.md#degre)|0.2.0 | |__+1__ | | -|[did](problems.md#did)|2.1.2 | |1 __+1__ | | -|[EpiCurve](problems.md#epicurve)|2.4-2 |__+1__ | |1 __+1__ | -|[epiR](problems.md#epir)|2.0.74 |__+1__ | |__+1__ | -|[FuncNN](problems.md#funcnn)|1.0 | |__+1__ |1 | -|[ggedit](problems.md#ggedit)|0.4.1 |__+1__ | | | -|[ggfixest](problems.md#ggfixest)|0.1.0 |1 __+1__ | | | -|[ggfortify](problems.md#ggfortify)|0.4.17 | | |__+1__ | -|[ggh4x](problems.md#ggh4x)|0.2.8 |1 __+2__ | |__+1__ | -|[ggheatmap](problems.md#ggheatmap)|2.2 | |__+1__ | | -|[ggScatRidges](problems.md#ggscatridges)|0.1.1 | |__+1__ | | -|[GimmeMyPlot](problems.md#gimmemyplot)|0.1.0 | |__+1__ | | -|[hilldiv](problems.md#hilldiv)|1.5.1 | |__+1__ | | -|[hJAM](problems.md#hjam)|1.0.0 | |__+1__ | | -|[iglu](problems.md#iglu)|4.0.0 |__+2__ | |__+1__ | -|[ImFoR](problems.md#imfor)|0.1.0 | |__+1__ | | -|[iNEXT.4steps](problems.md#inext4steps)|1.0.0 | |__+1__ | | -|[insane](problems.md#insane)|1.0.3 | |__+1__ | | -|[MarketMatching](problems.md#marketmatching)|1.2.1 |__+1__ | | | -|[mc2d](problems.md#mc2d)|0.2.0 | |__+1__ |1 | -|[MetaIntegrator](problems.md#metaintegrator)|2.1.3 | |__+1__ |2 | -|[MF.beta4](problems.md#mfbeta4)|1.0.3 | |1 __+1__ | | -|[MIMSunit](problems.md#mimsunit)|0.11.2 |__+1__ | | | -|[missingHE](problems.md#missinghe)|1.5.0 | |__+1__ |1 | -|[MSPRT](problems.md#msprt)|3.0 | |__+1__ |1 | -|[nzelect](problems.md#nzelect)|0.4.0 |__+1__ | |2 | -|[OenoKPM](problems.md#oenokpm)|2.4.1 | |__+1__ | | -|[posologyr](problems.md#posologyr)|1.2.4 |__+1__ | | | -|[qicharts](problems.md#qicharts)|0.5.8 |__+1__ | | | -|[qicharts2](problems.md#qicharts2)|0.7.5 |__+1__ | |__+1__ | -|[QuadratiK](problems.md#quadratik)|1.1.0 | |__+1__ |1 | -|[RCTrep](problems.md#rctrep)|1.2.0 | |__+1__ | | -|[scdtb](problems.md#scdtb)|0.1.0 |__+1__ | | | -|[SCOUTer](problems.md#scouter)|1.0.0 | |__+1__ | | -|[sievePH](problems.md#sieveph)|1.0.4 | |__+1__ | | -|[SouthParkRshiny](problems.md#southparkrshiny)|1.0.0 | |__+1__ |2 | -|[SqueakR](problems.md#squeakr)|1.3.0 |1 |__+1__ |1 | -|[survminer](problems.md#survminer)|0.4.9 | |__+1__ |1 | -|[symptomcheckR](problems.md#symptomcheckr)|0.1.3 | |__+1__ | | -|[tcgaViz](problems.md#tcgaviz)|1.0.2 | |__+1__ | | -|[TestGardener](problems.md#testgardener)|3.3.3 | |__+1__ | | -|[tis](problems.md#tis)|1.39 |__+1__ | |1 | -|[UniprotR](problems.md#uniprotr)|2.4.0 | |__+1__ | | -|[VALERIE](problems.md#valerie)|1.1.0 | |__+1__ |1 | -|[vannstats](problems.md#vannstats)|1.3.4.14 | |__+1__ | | -|[vici](problems.md#vici)|0.7.3 | |__+1__ | | -|[Wats](problems.md#wats)|1.0.1 |__+2__ | 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+|[Radviz](problems.md#radviz)|0.9.3 |__+2__ | |__+1__ | +|[rassta](problems.md#rassta)|1.0.5 |__+3__ | | | +|[REddyProc](problems.md#reddyproc)|1.3.3 | | |__+1__ | +|[redist](problems.md#redist)|4.2.0 |__+1__ | |1 __+1__ | +|[reReg](problems.md#rereg)|1.4.6 |__+1__ | | | +|[reservr](problems.md#reservr)|0.0.3 |1 __+1__ | |2 __+1__ | +|[rKOMICS](problems.md#rkomics)|1.3 |__+1__ | |2 | +|[RKorAPClient](problems.md#rkorapclient)|0.8.1 |__+1__ | | | +|[RNAseqQC](problems.md#rnaseqqc)|0.2.1 |__+1__ | |1 __+1__ | +|[roahd](problems.md#roahd)|1.4.3 |__+1__ | |1 | +|[romic](problems.md#romic)|1.1.3 |__+1__ | | | +|[roptions](problems.md#roptions)|1.0.3 |__+1__ | |1 | +|[santaR](problems.md#santar)|1.2.4 |1 __+1__ | | | +|[scdtb](problems.md#scdtb)|0.1.0 |__+1__ | | | +|[scoringutils](problems.md#scoringutils)|1.2.2 |1 __+1__ | |__+1__ | +|[scUtils](problems.md#scutils)|0.1.0 |__+1__ | |1 | +|[SCVA](problems.md#scva)|1.3.1 |__+1__ | | | +|[SDMtune](problems.md#sdmtune)|1.3.1 |1 __+1__ | |1 | +|[SeaVal](problems.md#seaval)|1.2.0 |__+1__ | |1 | +|[sglg](problems.md#sglg)|0.2.2 |__+1__ | | | +|[sgsR](problems.md#sgsr)|1.4.5 |__+1__ | | | +|[SHAPforxgboost](problems.md#shapforxgboost)|0.1.3 |__+1__ | | | +|[SHELF](problems.md#shelf)|1.10.0 | | |__+1__ | +|[shinipsum](problems.md#shinipsum)|0.1.1 |__+1__ | | | +|[SimNPH](problems.md#simnph)|0.5.5 |__+1__ | | | +|[smallsets](problems.md#smallsets)|2.0.0 |__+2__ | |1 __+1__ | +|[spbal](problems.md#spbal)|1.0.0 |__+1__ | |__+1__ | +|[spinifex](problems.md#spinifex)|0.3.7.0 |__+1__ | | | +|[sport](problems.md#sport)|0.2.1 |__+1__ | |1 | +|[SqueakR](problems.md#squeakr)|1.3.0 |1 | |1 __+1__ | +|[statgenGWAS](problems.md#statgengwas)|1.0.9 |__+1__ | |2 | +|[surveyexplorer](problems.md#surveyexplorer)|0.2.0 |__+1__ | | | +|[Sysrecon](problems.md#sysrecon)|0.1.3 |__+1__ | |1 | +|[tabledown](problems.md#tabledown)|1.0.0 |__+1__ | |1 | +|[TCIU](problems.md#tciu)|1.2.6 |__+2__ | |1 __+1__ | +|[tensorEVD](problems.md#tensorevd)|0.1.3 |__+1__ | |__+1__ | +|[thematic](problems.md#thematic)|0.1.5 |__+2__ | | | +|[tidybayes](problems.md#tidybayes)|3.0.6 |2 __+1__ | | | +|[tidycat](problems.md#tidycat)|0.1.2 |__+2__ | |1 __+1__ | +|[tidyCDISC](problems.md#tidycdisc)|0.2.1 |__+1__ | |1 | +|[tidysdm](problems.md#tidysdm)|0.9.5 |__+1__ | |1 __+1__ | +|[tidytreatment](problems.md#tidytreatment)|0.2.2 |__+1__ | |1 __+1__ | +|[timetk](problems.md#timetk)|2.9.0 |__+1__ | |1 | +|[tinyarray](problems.md#tinyarray)|2.4.2 |__+1__ | | | +|[tornado](problems.md#tornado)|0.1.3 |__+3__ | |__+1__ | +|[TOSTER](problems.md#toster)|0.8.3 |__+3__ | |__+1__ | +|[TreatmentPatterns](problems.md#treatmentpatterns)|2.6.7 |__+1__ | | | +|[trelliscopejs](problems.md#trelliscopejs)|0.2.6 |__+1__ | | | +|[tricolore](problems.md#tricolore)|1.2.4 |__+2__ | |1 __+1__ | +|[triptych](problems.md#triptych)|0.1.3 |__+1__ | | | +|[tsnet](problems.md#tsnet)|0.1.0 |__+1__ | |2 | +|[umiAnalyzer](problems.md#umianalyzer)|1.0.0 |__+1__ | | | +|[valr](problems.md#valr)|0.8.1 |__+1__ | |1 | +|[vivaldi](problems.md#vivaldi)|1.0.1 |__+3__ | |1 __+1__ | +|[vivid](problems.md#vivid)|0.2.8 |__+1__ | | | +|[vvshiny](problems.md#vvshiny)|0.1.1 |__+1__ | | | +|[wilson](problems.md#wilson)|2.4.2 |__+1__ | | | +|[xaringanthemer](problems.md#xaringanthemer)|0.4.2 |1 __+1__ | | | +|[yamlet](problems.md#yamlet)|1.0.3 |__+2__ | | | diff --git a/revdep/cran.md b/revdep/cran.md index f1da4a685a..4a9f813633 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,96 +1,332 @@ ## revdepcheck results -We checked 5034 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. +We checked 5166 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. - * We saw 64 new problems - * We failed to check 146 packages + * We saw 242 new problems + * We failed to check 132 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* asmbPLS - checking whether package ‘asmbPLS’ can be installed ... WARNING +* activAnalyzer + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* actxps + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* AeRobiology + checking re-building of vignette outputs ... NOTE + +* agricolaeplotr + checking tests ... ERROR + +* AnalysisLin + checking examples ... ERROR + +* animbook + checking examples ... ERROR + +* ANN2 + checking tests ... ERROR + +* aplot + checking examples ... ERROR + +* applicable + checking tests ... ERROR + +* ASRgenomics + checking examples ... ERROR + +* autoplotly + checking examples ... ERROR + checking tests ... ERROR + +* autoReg + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* bartMan + checking examples ... ERROR + +* bayesAB + checking tests ... ERROR -* bdl - checking whether package ‘bdl’ can be installed ... WARNING +* BayesGrowth + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* BayesianReasoning + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* BayesMallows + checking tests ... ERROR + +* bayesplot + checking tests ... ERROR + +* bayestestR + checking examples ... ERROR + +* beastt + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* bdscale +* besthr + checking examples ... ERROR checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE * biclustermd checking tests ... ERROR +* biodosetools + checking tests ... ERROR + +* boxly + checking tests ... ERROR + +* braidReports + checking examples ... ERROR + +* breathtestcore + checking tests ... ERROR + * brolgar checking examples ... ERROR + +* cartograflow + checking examples ... ERROR + +* cartographr + checking tests ... ERROR + +* cats + checking examples ... ERROR + +* cheem + checking tests ... ERROR + +* chillR + checking examples ... ERROR + +* chronicle + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* circhelp + checking examples ... ERROR checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE -* bSi - checking whether package ‘bSi’ can be installed ... WARNING +* clifro + checking tests ... ERROR -* CausalImpact +* clinDataReview + checking examples ... ERROR checking tests ... ERROR + checking re-building of vignette outputs ... NOTE + +* clinUtils + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* CohortPlat + checking examples ... ERROR checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE -* ClusROC - checking whether package ‘ClusROC’ can be installed ... WARNING +* CoreMicrobiomeR + checking examples ... ERROR -* clustEff - checking whether package ‘clustEff’ can be installed ... WARNING +* correlationfunnel + checking tests ... ERROR -* CLVTools +* corrViz + checking examples ... ERROR checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE -* coda4microbiome - checking whether package ‘coda4microbiome’ can be installed ... WARNING - -* CompAREdesign - checking whether package ‘CompAREdesign’ can be installed ... WARNING +* countfitteR + checking tests ... ERROR * covidcast checking tests ... ERROR checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE -* Coxmos - checking Rd files ... WARNING +* crosshap + checking examples ... ERROR + +* ctrialsgov + checking tests ... ERROR -* csa - checking whether package ‘csa’ can be installed ... WARNING +* cubble + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE * deeptime checking examples ... ERROR + +* distributional + checking examples ... ERROR + +* dittoViz + checking examples ... ERROR + checking tests ... ERROR + +* EGM + checking tests ... ERROR + +* entropart + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* epiCleanr + checking examples ... ERROR + +* esci + checking examples ... ERROR + checking tests ... ERROR + +* evalITR + checking re-building of vignette outputs ... NOTE + +* eventstudyr + checking tests ... ERROR + +* EvoPhylo + checking examples ... ERROR + checking re-building of vignette outputs ... NOTE + +* expirest + checking tests ... ERROR + +* explainer + checking examples ... ERROR + +* ezEDA + checking tests ... ERROR + +* ezplot + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* fable.prophet + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* fabletools + checking examples ... ERROR + checking tests ... ERROR + +* factoextra + checking examples ... ERROR + +* fairmodels + checking tests ... ERROR + +* fddm + checking running R code from vignettes ... ERROR + +* feasts + checking tests ... ERROR + +* ffp + checking examples ... ERROR + +* fido + checking examples ... ERROR + checking tests ... ERROR + +* flipr + checking re-building of vignette outputs ... NOTE + +* foqat + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* forestly + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* frailtyEM + checking examples ... ERROR + +* funcharts + checking examples ... ERROR + +* geomtextpath + checking examples ... ERROR checking tests ... ERROR -* DEGRE - checking whether package ‘DEGRE’ can be installed ... WARNING +* GGally + checking tests ... ERROR -* did - checking whether package ‘did’ can be installed ... WARNING +* gganimate + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* EpiCurve +* ggbrain checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE -* epiR +* ggbreak + checking examples ... ERROR checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE -* FuncNN - checking whether package ‘FuncNN’ can be installed ... WARNING +* ggdark + checking examples ... ERROR + checking tests ... ERROR + +* ggdist + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... NOTE + +* ggDoubleHeat + checking examples ... ERROR + +* ggeasy + checking examples ... ERROR + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE * ggedit checking examples ... ERROR +* ggESDA + checking examples ... ERROR + * ggfixest checking tests ... ERROR +* ggforce + checking examples ... ERROR + +* ggformula + checking for code/documentation mismatches ... WARNING + * ggfortify + checking tests ... ERROR + +* gggenomes + checking examples ... ERROR + checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE * ggh4x @@ -98,189 +334,607 @@ Issues with CRAN packages are summarised below. checking tests ... ERROR checking re-building of vignette outputs ... NOTE -* ggheatmap - checking whether package ‘ggheatmap’ can be installed ... WARNING +* gghighlight + checking examples ... ERROR + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* ggScatRidges - checking whether package ‘ggScatRidges’ can be installed ... WARNING +* ggHoriPlot + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* GimmeMyPlot - checking whether package ‘GimmeMyPlot’ can be installed ... WARNING +* ggiraph + checking examples ... ERROR + checking tests ... ERROR -* hilldiv - checking whether package ‘hilldiv’ can be installed ... WARNING +* ggiraphExtra + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* hJAM - checking whether package ‘hJAM’ can be installed ... WARNING +* ggmice + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* iglu +* ggmulti checking examples ... ERROR + checking tests ... ERROR checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE -* ImFoR - checking whether package ‘ImFoR’ can be installed ... WARNING +* ggnewscale + checking examples ... ERROR + checking tests ... ERROR -* iNEXT.4steps - checking whether package ‘iNEXT.4steps’ can be installed ... WARNING +* ggparallel + checking tests ... ERROR -* insane - checking whether package ‘insane’ can be installed ... WARNING +* ggpicrust2 + checking examples ... ERROR -* MarketMatching - checking re-building of vignette outputs ... ERROR +* ggpie + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* mc2d - checking whether package ‘mc2d’ can be installed ... WARNING +* ggplotlyExtra + checking examples ... ERROR -* MetaIntegrator - checking whether package ‘MetaIntegrator’ can be installed ... WARNING +* ggpol + checking examples ... ERROR -* MF.beta4 - checking whether package ‘MF.beta4’ can be installed ... WARNING +* ggpubr + checking tests ... ERROR -* MIMSunit +* ggraph checking examples ... ERROR + checking re-building of vignette outputs ... NOTE -* missingHE - checking whether package ‘missingHE’ can be installed ... WARNING +* ggredist + checking examples ... ERROR -* MSPRT - checking whether package ‘MSPRT’ can be installed ... WARNING +* ggRtsy + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* nzelect +* ggseqplot checking examples ... ERROR + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* OenoKPM - checking whether package ‘OenoKPM’ can be installed ... WARNING +* ggside + checking tests ... ERROR + checking for code/documentation mismatches ... WARNING -* posologyr - checking running R code from vignettes ... ERROR +* ggspatial + checking examples ... ERROR + checking tests ... ERROR -* qicharts +* ggtern checking examples ... ERROR -* qicharts2 +* ggupset + checking examples ... ERROR + +* ggVennDiagram checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE -* QuadratiK - checking whether package ‘QuadratiK’ can be installed ... WARNING +* greatR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* RCTrep - checking whether package ‘RCTrep’ can be installed ... WARNING +* Greymodels + checking examples ... ERROR -* scdtb +* gtExtras checking tests ... ERROR -* SCOUTer - checking whether package ‘SCOUTer’ can be installed ... WARNING - -* sievePH - checking whether package ‘sievePH’ can be installed ... WARNING +* HaploCatcher + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* SouthParkRshiny - checking whether package ‘SouthParkRshiny’ can be installed ... WARNING +* healthyR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* SqueakR - checking whether package ‘SqueakR’ can be installed ... WARNING +* healthyR.ts + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* survminer - checking whether package ‘survminer’ can be installed ... WARNING +* heatmaply + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* symptomcheckR - checking whether package ‘symptomcheckR’ can be installed ... WARNING +* hermiter + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* tcgaViz - checking whether package ‘tcgaViz’ can be installed ... WARNING +* hesim + checking tests ... ERROR -* TestGardener - checking whether package ‘TestGardener’ can be installed ... WARNING +* hidecan + checking tests ... ERROR + checking re-building of vignette outputs ... NOTE -* tis +* HVT checking examples ... ERROR -* UniprotR - checking whether package ‘UniprotR’ can be installed ... WARNING +* hypsoLoop + checking whether package ‘hypsoLoop’ can be installed ... WARNING -* VALERIE - checking whether package ‘VALERIE’ can be installed ... WARNING +* ICvectorfields + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* vannstats - checking whether package ‘vannstats’ can be installed ... WARNING +* idopNetwork + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE -* vici - checking whether package ‘vici’ can be installed ... WARNING +* inferCSN + checking examples ... ERROR -* Wats +* insurancerating checking examples ... ERROR + +* inTextSummaryTable + checking tests ... ERROR checking running R code from vignettes ... ERROR checking re-building of vignette outputs ... NOTE -* xaringanthemer +* karel + checking examples ... ERROR + checking tests ... ERROR + +* kDGLM + checking examples ... ERROR + +* latentcor + checking examples ... ERROR + +* lcars + checking examples ... ERROR + checking running R code from vignettes ... ERROR + +* lemon + checking examples ... ERROR + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* lfproQC + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* LMoFit + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* manydata + checking tests ... ERROR + +* MARVEL + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* MBNMAdose + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* MBNMAtime + checking re-building of vignette outputs ... NOTE + +* MetaNet + checking examples ... ERROR + +* metR + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* migraph + checking tests ... ERROR + +* MiMIR + checking examples ... ERROR + +* miRetrieve + checking tests ... ERROR + +* misspi + checking examples ... ERROR + +* mizer + checking tests ... ERROR + +* mlr3spatiotempcv + checking examples ... ERROR + +* mlr3viz + checking examples ... ERROR + +* modeltime.resample + checking tests ... ERROR + +* move + checking installed package size ... NOTE + +* mtb + checking tests ... ERROR + +* neatmaps + checking examples ... ERROR + +* NetFACS + checking examples ... ERROR + checking running R code from vignettes ... ERROR + +* NeuralSens + checking examples ... ERROR + +* NHSRplotthedots + checking tests ... ERROR + +* NIMAA + checking examples ... ERROR + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* OBIC + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* OmicNavigator + checking tests ... ERROR + +* oncomsm + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* pafr + checking tests ... ERROR + +* patchwork + checking examples ... ERROR + +* pathviewr + checking tests ... ERROR + +* pcutils + checking examples ... ERROR + +* pdxTrees + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* personalized + checking tests ... ERROR + +* phylepic + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* Plasmidprofiler + checking examples ... ERROR + +* platetools + checking tests ... ERROR + +* plotDK + checking tests ... ERROR + +* plotly + checking examples ... ERROR + checking tests ... ERROR + +* pmartR + checking tests ... ERROR + +* pmxTools + checking tests ... ERROR + +* posterior + checking re-building of vignette outputs ... NOTE + +* PPQplan + checking re-building of vignette outputs ... NOTE + +* ppseq + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* precrec + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* priorsense + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* ProAE + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* probably + checking tests ... ERROR + +* processmapR + checking tests ... ERROR + +* psborrow + checking tests ... ERROR + +* r2dii.plot + checking tests ... ERROR + +* Radviz + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* rassta + checking examples ... ERROR + checking tests ... ERROR + checking running R code from vignettes ... ERROR + +* REddyProc + checking installed package size ... NOTE + +* redist + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* reReg + checking examples ... ERROR + +* reservr + checking examples ... ERROR + checking re-building of vignette outputs ... NOTE + +* rKOMICS + checking examples ... ERROR + +* RKorAPClient + checking tests ... ERROR + +* RNAseqQC + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* roahd + checking examples ... ERROR + +* romic + checking tests ... ERROR + +* roptions + checking examples ... ERROR + +* santaR + checking tests ... ERROR + +* scdtb + checking tests ... ERROR + +* scoringutils + checking examples ... ERROR + checking re-building of vignette outputs ... NOTE + +* scUtils + checking tests ... ERROR + +* SCVA + checking examples ... ERROR + +* SDMtune + checking tests ... ERROR + +* SeaVal + checking examples ... ERROR + +* sglg + checking examples ... ERROR + +* sgsR + checking tests ... ERROR + +* SHAPforxgboost + checking examples ... ERROR + +* SHELF + checking re-building of vignette outputs ... NOTE + +* shinipsum + checking tests ... ERROR + +* SimNPH + checking tests ... ERROR + +* smallsets + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* spbal + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* spinifex + checking tests ... ERROR + +* sport + checking tests ... ERROR + +* SqueakR + checking re-building of vignette outputs ... NOTE + +* statgenGWAS + checking tests ... ERROR + +* surveyexplorer + checking examples ... ERROR + +* Sysrecon + checking examples ... ERROR + +* tabledown + checking examples ... ERROR + +* TCIU + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* tensorEVD + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* thematic + checking examples ... ERROR + checking tests ... ERROR + +* tidybayes + checking examples ... ERROR + +* tidycat + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* tidyCDISC + checking tests ... ERROR + +* tidysdm + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* tidytreatment + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* timetk + checking tests ... ERROR + +* tinyarray + checking examples ... ERROR + +* tornado + checking examples ... ERROR + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* TOSTER + checking examples ... ERROR + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* TreatmentPatterns + checking tests ... ERROR + +* trelliscopejs + checking tests ... ERROR + +* tricolore + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* triptych + checking examples ... ERROR + +* tsnet + checking tests ... ERROR + +* umiAnalyzer + checking examples ... ERROR + +* valr + checking tests ... ERROR + +* vivaldi + checking examples ... ERROR + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* vivid + checking examples ... ERROR + +* vvshiny + checking tests ... ERROR + +* wilson + checking tests ... ERROR + +* xaringanthemer + checking tests ... ERROR + +* yamlet + checking examples ... ERROR checking tests ... ERROR ### Failed to check * abctools (NA) -* AnanseSeurat (NA) * animalEKF (NA) * ANOM (NA) -* APackOfTheClones (NA) * atRisk (NA) * AutoScore (NA) * bayesdfa (NA) * bayesDP (NA) * BayesianFactorZoo (NA) +* BayesSurvive (NA) * BCClong (NA) +* BGGM (NA) * binsreg (NA) * bmstdr (NA) * bspcov (NA) +* BuyseTest (NA) * CalibrationCurves (NA) -* Canek (NA) * CARBayesST (NA) * CaseBasedReasoning (NA) -* cellpypes (NA) * CGPfunctions (NA) -* CIARA (NA) -* ClustAssess (NA) -* clustree (NA) * cmprskcoxmsm (NA) -* combiroc (NA) -* conos (NA) * contrast (NA) -* countland (NA) * coxed (NA) * CRMetrics (NA) * csmpv (NA) * ctsem (NA) -* CytoSimplex (NA) * DepthProc (NA) -* DIscBIO (NA) * DR.SC (NA) -* dyngen (NA) -* EcoEnsemble (NA) +* DynNom (NA) +* easybgm (NA) * ecolottery (NA) * EpiEstim (NA) * evolqg (NA) * ForecastComb (NA) * gapfill (NA) * GeomComb (NA) -* geostan (NA) * ggrcs (NA) * ggrisk (NA) -* ggsector (NA) * gJLS2 (NA) -* grandR (NA) * Greg (NA) * greport (NA) -* harmony (NA) * hettx (NA) * hIRT (NA) * Hmsc (NA) +* inventorize (NA) * iNZightPlots (NA) * iNZightRegression (NA) * IRexamples (NA) +* jmBIG (NA) * joineRML (NA) * JWileymisc (NA) * kmc (NA) @@ -292,7 +946,6 @@ Issues with CRAN packages are summarised below. * MendelianRandomization (NA) * MetabolicSurv (NA) * miWQS (NA) -* mlmts (NA) * MRZero (NA) * Multiaovbay (NA) * multilevelTools (NA) @@ -310,10 +963,11 @@ Issues with CRAN packages are summarised below. * pould (NA) * powerly (NA) * pre (NA) -* PRECAST (NA) * ProFAST (NA) +* psbcSpeedUp (NA) * pscore (NA) * psfmi (NA) +* qPCRtools (NA) * qreport (NA) * qris (NA) * qte (NA) @@ -322,35 +976,33 @@ Issues with CRAN packages are summarised below. * RcmdrPlugin.RiskDemo (NA) * rddtools (NA) * riskRegression (NA) -* rliger (NA) * rms (NA) * rmsb (NA) * robmed (NA) * robmedExtra (NA) * RPPanalyzer (NA) -* rstanarm (NA) +* RQdeltaCT (NA) * scCustomize (NA) * SCdeconR (NA) -* scDiffCom (NA) * scGate (NA) +* SCIntRuler (NA) * scMappR (NA) -* SCORPIUS (NA) -* scpoisson (NA) -* SCpubr (NA) +* scpi (NA) * scRNAstat (NA) * sectorgap (NA) * SEERaBomb (NA) * semicmprskcoxmsm (NA) * SensMap (NA) +* Seurat (NA) +* shinyTempSignal (NA) +* sievePH (NA) * Signac (NA) * SimplyAgree (NA) * sMSROC (NA) * SNPassoc (NA) * snplinkage (NA) * SoupX (NA) -* SpaDES.core (NA) * sparsereg (NA) -* SPECK (NA) * spikeSlabGAM (NA) * statsr (NA) * streamDAG (NA) @@ -361,10 +1013,9 @@ Issues with CRAN packages are summarised below. * tidyEdSurvey (NA) * tidyseurat (NA) * tidyvpc (NA) -* treefit (NA) * TriDimRegression (NA) * TSrepr (NA) * twang (NA) -* valse (NA) * vdg (NA) +* visa (NA) * WRTDStidal (NA) diff --git a/revdep/failures.md b/revdep/failures.md index 5eb2ead6c6..84ae909aa5 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -69,82 +69,6 @@ ERROR: lazy loading failed for package ‘abctools’ * removing ‘/tmp/workdir/abctools/old/abctools.Rcheck/abctools’ -``` -# AnanseSeurat - -
- -* Version: 1.2.0 -* GitHub: https://github.com/JGASmits/AnanseSeurat -* Source code: https://github.com/cran/AnanseSeurat -* Date/Publication: 2023-11-11 21:43:17 UTC -* Number of recursive dependencies: 201 - -Run `revdepcheck::cloud_details(, "AnanseSeurat")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/AnanseSeurat/new/AnanseSeurat.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘AnanseSeurat/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -Package suggested but not available for checking: ‘Signac’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/AnanseSeurat/old/AnanseSeurat.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘AnanseSeurat/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -Package suggested but not available for checking: ‘Signac’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - ``` # animalEKF @@ -216,7 +140,7 @@ ERROR: lazy loading failed for package ‘animalEKF’ * GitHub: https://github.com/PhilipPallmann/ANOM * Source code: https://github.com/cran/ANOM * Date/Publication: 2017-04-12 13:32:33 UTC -* Number of recursive dependencies: 77 +* Number of recursive dependencies: 60 Run `revdepcheck::cloud_details(, "ANOM")` for more info @@ -271,82 +195,6 @@ ERROR: lazy loading failed for package ‘ANOM’ * removing ‘/tmp/workdir/ANOM/old/ANOM.Rcheck/ANOM’ -``` -# APackOfTheClones - -
- -* Version: 1.2.0 -* GitHub: https://github.com/Qile0317/APackOfTheClones -* Source code: https://github.com/cran/APackOfTheClones -* Date/Publication: 2024-04-16 09:50:02 UTC -* Number of recursive dependencies: 176 - -Run `revdepcheck::cloud_details(, "APackOfTheClones")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/APackOfTheClones/new/APackOfTheClones.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘APackOfTheClones/DESCRIPTION’ ... OK -... -* this is package ‘APackOfTheClones’ version ‘1.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'Seurat', 'SeuratObject' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/APackOfTheClones/old/APackOfTheClones.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘APackOfTheClones/DESCRIPTION’ ... OK -... -* this is package ‘APackOfTheClones’ version ‘1.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'Seurat', 'SeuratObject' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - ``` # atRisk @@ -418,7 +266,7 @@ ERROR: lazy loading failed for package ‘atRisk’ * GitHub: https://github.com/nliulab/AutoScore * Source code: https://github.com/cran/AutoScore * Date/Publication: 2022-10-15 22:15:26 UTC -* Number of recursive dependencies: 180 +* Number of recursive dependencies: 170 Run `revdepcheck::cloud_details(, "AutoScore")` for more info @@ -689,16 +537,94 @@ ERROR: lazy loading failed for package ‘BayesianFactorZoo’ * removing ‘/tmp/workdir/BayesianFactorZoo/old/BayesianFactorZoo.Rcheck/BayesianFactorZoo’ +``` +# BayesSurvive + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/ocbe-uio/BayesSurvive +* Source code: https://github.com/cran/BayesSurvive +* Date/Publication: 2024-06-04 13:20:12 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "BayesSurvive")` for more info + +
+ +## In both + +* checking whether package ‘BayesSurvive’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/BayesSurvive/new/BayesSurvive.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BayesSurvive’ ... +** package ‘BayesSurvive’ successfully unpacked and MD5 sums checked +** using staged installation +checking whether the C++ compiler works... yes +checking for C++ compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether the compiler supports GNU C++... yes +checking whether g++ -std=gnu++17 accepts -g... yes +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BayesSurvive’ +* removing ‘/tmp/workdir/BayesSurvive/new/BayesSurvive.Rcheck/BayesSurvive’ + + +``` +### CRAN + +``` +* installing *source* package ‘BayesSurvive’ ... +** package ‘BayesSurvive’ successfully unpacked and MD5 sums checked +** using staged installation +checking whether the C++ compiler works... yes +checking for C++ compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether the compiler supports GNU C++... yes +checking whether g++ -std=gnu++17 accepts -g... yes +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BayesSurvive’ +* removing ‘/tmp/workdir/BayesSurvive/old/BayesSurvive.Rcheck/BayesSurvive’ + + ``` # BCClong
-* Version: 1.0.2 +* Version: 1.0.3 * GitHub: NA * Source code: https://github.com/cran/BCClong -* Date/Publication: 2024-02-05 11:50:06 UTC -* Number of recursive dependencies: 142 +* Date/Publication: 2024-06-24 00:00:02 UTC +* Number of recursive dependencies: 145 Run `revdepcheck::cloud_details(, "BCClong")` for more info @@ -712,11 +638,6 @@ Run `revdepcheck::cloud_details(, "BCClong")` for more info See ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/00install.out’ for details. ``` -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘joineRML’ - ``` - ## Installation ### Devel @@ -733,8 +654,8 @@ g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/ g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR ... -installing to /tmp/workdir/BCClong/new/BCClong.Rcheck/00LOCK-BCClong/00new/BCClong/libs ** R +** data ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : @@ -760,8 +681,8 @@ g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/ g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR ... -installing to /tmp/workdir/BCClong/old/BCClong.Rcheck/00LOCK-BCClong/00new/BCClong/libs ** R +** data ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : @@ -772,6 +693,84 @@ ERROR: lazy loading failed for package ‘BCClong’ * removing ‘/tmp/workdir/BCClong/old/BCClong.Rcheck/BCClong’ +``` +# BGGM + +
+ +* Version: 2.1.3 +* GitHub: https://github.com/donaldRwilliams/BGGM +* Source code: https://github.com/cran/BGGM +* Date/Publication: 2024-07-05 20:30:02 UTC +* Number of recursive dependencies: 208 + +Run `revdepcheck::cloud_details(, "BGGM")` for more info + +
+ +## In both + +* checking whether package ‘BGGM’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BGGM’ ... +** package ‘BGGM’ successfully unpacked and MD5 sums checked +** using staged installation +checking whether the C++ compiler works... yes +checking for C++ compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether we are using the GNU C++ compiler... yes +checking whether g++ -std=gnu++17 accepts -g... yes +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BGGM’ +* removing ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/BGGM’ + + +``` +### CRAN + +``` +* installing *source* package ‘BGGM’ ... +** package ‘BGGM’ successfully unpacked and MD5 sums checked +** using staged installation +checking whether the C++ compiler works... yes +checking for C++ compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether we are using the GNU C++ compiler... yes +checking whether g++ -std=gnu++17 accepts -g... yes +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BGGM’ +* removing ‘/tmp/workdir/BGGM/old/BGGM.Rcheck/BGGM’ + + ``` # binsreg @@ -839,7 +838,7 @@ ERROR: lazy loading failed for package ‘binsreg’ * GitHub: https://github.com/sujit-sahu/bmstdr * Source code: https://github.com/cran/bmstdr * Date/Publication: 2023-12-18 15:00:02 UTC -* Number of recursive dependencies: 212 +* Number of recursive dependencies: 215 Run `revdepcheck::cloud_details(, "bmstdr")` for more info @@ -917,7 +916,7 @@ ERROR: lazy loading failed for package ‘bmstdr’ * GitHub: https://github.com/statjs/bspcov * Source code: https://github.com/cran/bspcov * Date/Publication: 2024-02-06 16:50:08 UTC -* Number of recursive dependencies: 122 +* Number of recursive dependencies: 121 Run `revdepcheck::cloud_details(, "bspcov")` for more info @@ -971,26 +970,26 @@ ERROR: lazy loading failed for package ‘bspcov’ ``` -# CalibrationCurves +# BuyseTest
-* Version: 2.0.1 -* GitHub: NA -* Source code: https://github.com/cran/CalibrationCurves -* Date/Publication: 2024-03-01 10:12:35 UTC -* Number of recursive dependencies: 78 +* Version: 3.0.4 +* GitHub: https://github.com/bozenne/BuyseTest +* Source code: https://github.com/cran/BuyseTest +* Date/Publication: 2024-07-01 09:20:02 UTC +* Number of recursive dependencies: 133 -Run `revdepcheck::cloud_details(, "CalibrationCurves")` for more info +Run `revdepcheck::cloud_details(, "BuyseTest")` for more info
## In both -* checking whether package ‘CalibrationCurves’ can be installed ... ERROR +* checking whether package ‘BuyseTest’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/CalibrationCurves/new/CalibrationCurves.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/BuyseTest/new/BuyseTest.Rcheck/00install.out’ for details. ``` ## Installation @@ -998,114 +997,116 @@ Run `revdepcheck::cloud_details(, "CalibrationCurves")` for more info ### Devel ``` -* installing *source* package ‘CalibrationCurves’ ... -** package ‘CalibrationCurves’ successfully unpacked and MD5 sums checked +* installing *source* package ‘BuyseTest’ ... +** package ‘BuyseTest’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c FCT_buyseTest.cpp -o FCT_buyseTest.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c FCT_precompute.cpp -o FCT_precompute.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c utils-from-riskRegression.cpp -o utils-from-riskRegression.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BuyseTest.so FCT_buyseTest.o FCT_precompute.o RcppExports.o utils-from-riskRegression.o -L/opt/R/4.3.1/lib/R/lib -lR +... +installing to /tmp/workdir/BuyseTest/new/BuyseTest.Rcheck/00LOCK-BuyseTest/00new/BuyseTest/libs ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error: unable to load R code in package ‘BuyseTest’ Execution halted -ERROR: lazy loading failed for package ‘CalibrationCurves’ -* removing ‘/tmp/workdir/CalibrationCurves/new/CalibrationCurves.Rcheck/CalibrationCurves’ +ERROR: lazy loading failed for package ‘BuyseTest’ +* removing ‘/tmp/workdir/BuyseTest/new/BuyseTest.Rcheck/BuyseTest’ ``` ### CRAN ``` -* installing *source* package ‘CalibrationCurves’ ... -** package ‘CalibrationCurves’ successfully unpacked and MD5 sums checked +* installing *source* package ‘BuyseTest’ ... +** package ‘BuyseTest’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c FCT_buyseTest.cpp -o FCT_buyseTest.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c FCT_precompute.cpp -o FCT_precompute.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c utils-from-riskRegression.cpp -o utils-from-riskRegression.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BuyseTest.so FCT_buyseTest.o FCT_precompute.o RcppExports.o utils-from-riskRegression.o -L/opt/R/4.3.1/lib/R/lib -lR +... +installing to /tmp/workdir/BuyseTest/old/BuyseTest.Rcheck/00LOCK-BuyseTest/00new/BuyseTest/libs +** R ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error: unable to load R code in package ‘BuyseTest’ Execution halted -ERROR: lazy loading failed for package ‘CalibrationCurves’ -* removing ‘/tmp/workdir/CalibrationCurves/old/CalibrationCurves.Rcheck/CalibrationCurves’ +ERROR: lazy loading failed for package ‘BuyseTest’ +* removing ‘/tmp/workdir/BuyseTest/old/BuyseTest.Rcheck/BuyseTest’ ``` -# Canek +# CalibrationCurves
-* Version: 0.2.5 -* GitHub: https://github.com/MartinLoza/Canek -* Source code: https://github.com/cran/Canek -* Date/Publication: 2023-12-08 05:30:02 UTC -* Number of recursive dependencies: 220 +* Version: 2.0.3 +* GitHub: NA +* Source code: https://github.com/cran/CalibrationCurves +* Date/Publication: 2024-07-02 08:50:02 UTC +* Number of recursive dependencies: 78 -Run `revdepcheck::cloud_details(, "Canek")` for more info +Run `revdepcheck::cloud_details(, "CalibrationCurves")` for more info
-## Error before installation - -### Devel +## In both -``` -* using log directory ‘/tmp/workdir/Canek/new/Canek.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Canek/DESCRIPTION’ ... OK -... - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 74 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘toy_example.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE +* checking whether package ‘CalibrationCurves’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/CalibrationCurves/new/CalibrationCurves.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘CalibrationCurves’ ... +** package ‘CalibrationCurves’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘CalibrationCurves’ +* removing ‘/tmp/workdir/CalibrationCurves/new/CalibrationCurves.Rcheck/CalibrationCurves’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/Canek/old/Canek.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Canek/DESCRIPTION’ ... OK -... - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 74 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘toy_example.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - +* installing *source* package ‘CalibrationCurves’ ... +** package ‘CalibrationCurves’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘CalibrationCurves’ +* removing ‘/tmp/workdir/CalibrationCurves/old/CalibrationCurves.Rcheck/CalibrationCurves’ ``` @@ -1117,7 +1118,7 @@ Status: 1 ERROR, 1 NOTE * GitHub: https://github.com/duncanplee/CARBayesST * Source code: https://github.com/cran/CARBayesST * Date/Publication: 2023-10-30 16:40:02 UTC -* Number of recursive dependencies: 118 +* Number of recursive dependencies: 117 Run `revdepcheck::cloud_details(, "CARBayesST")` for more info @@ -1258,82 +1259,6 @@ ERROR: lazy loading failed for package ‘CaseBasedReasoning’ * removing ‘/tmp/workdir/CaseBasedReasoning/old/CaseBasedReasoning.Rcheck/CaseBasedReasoning’ -``` -# cellpypes - -
- -* Version: 0.3.0 -* GitHub: https://github.com/FelixTheStudent/cellpypes -* Source code: https://github.com/cran/cellpypes -* Date/Publication: 2024-01-27 07:30:07 UTC -* Number of recursive dependencies: 183 - -Run `revdepcheck::cloud_details(, "cellpypes")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/cellpypes/new/cellpypes.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘cellpypes/DESCRIPTION’ ... OK -... -* checking contents of ‘data’ directory ... OK -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/cellpypes/old/cellpypes.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘cellpypes/DESCRIPTION’ ... OK -... -* checking contents of ‘data’ directory ... OK -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 1 NOTE - - - - - ``` # CGPfunctions @@ -1399,254 +1324,214 @@ ERROR: lazy loading failed for package ‘CGPfunctions’ ``` -# CIARA +# cmprskcoxmsm
-* Version: 0.1.0 +* Version: 0.2.1 * GitHub: NA -* Source code: https://github.com/cran/CIARA -* Date/Publication: 2022-02-22 20:00:02 UTC -* Number of recursive dependencies: 181 +* Source code: https://github.com/cran/cmprskcoxmsm +* Date/Publication: 2021-09-04 05:50:02 UTC +* Number of recursive dependencies: 71 -Run `revdepcheck::cloud_details(, "CIARA")` for more info +Run `revdepcheck::cloud_details(, "cmprskcoxmsm")` for more info
-## Error before installation - -### Devel +## In both -``` -* using log directory ‘/tmp/workdir/CIARA/new/CIARA.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘CIARA/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘CIARA.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... NOTE -Note: skipping ‘CIARA.Rmd’ due to unavailable dependencies: 'Seurat' -* DONE -Status: 3 NOTEs +* checking whether package ‘cmprskcoxmsm’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘cmprskcoxmsm’ ... +** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘cmprskcoxmsm’ +* removing ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/cmprskcoxmsm’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/CIARA/old/CIARA.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘CIARA/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘CIARA.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... NOTE -Note: skipping ‘CIARA.Rmd’ due to unavailable dependencies: 'Seurat' -* DONE -Status: 3 NOTEs - - - +* installing *source* package ‘cmprskcoxmsm’ ... +** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘cmprskcoxmsm’ +* removing ‘/tmp/workdir/cmprskcoxmsm/old/cmprskcoxmsm.Rcheck/cmprskcoxmsm’ ``` -# ClustAssess +# contrast
-* Version: 0.3.0 -* GitHub: https://github.com/Core-Bioinformatics/ClustAssess -* Source code: https://github.com/cran/ClustAssess -* Date/Publication: 2022-01-26 16:52:46 UTC -* Number of recursive dependencies: 164 +* Version: 0.24.2 +* GitHub: https://github.com/Alanocallaghan/contrast +* Source code: https://github.com/cran/contrast +* Date/Publication: 2022-10-05 17:20:09 UTC +* Number of recursive dependencies: 111 -Run `revdepcheck::cloud_details(, "ClustAssess")` for more info +Run `revdepcheck::cloud_details(, "contrast")` for more info
-## Error before installation +## In both -### Devel +* checking whether package ‘contrast’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/contrast/new/contrast.Rcheck/00install.out’ for details. + ``` -``` -* using log directory ‘/tmp/workdir/ClustAssess/new/ClustAssess.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ClustAssess/DESCRIPTION’ ... OK -... ---- finished re-building ‘comparing-soft-and-hierarchical.Rmd’ +## Installation -SUMMARY: processing the following file failed: - ‘ClustAssess.Rmd’ +### Devel -Error: Vignette re-building failed. +``` +* installing *source* package ‘contrast’ ... +** package ‘contrast’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted - -* DONE -Status: 1 ERROR, 1 WARNING, 2 NOTEs - - - +ERROR: lazy loading failed for package ‘contrast’ +* removing ‘/tmp/workdir/contrast/new/contrast.Rcheck/contrast’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/ClustAssess/old/ClustAssess.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ClustAssess/DESCRIPTION’ ... OK -... ---- finished re-building ‘comparing-soft-and-hierarchical.Rmd’ - -SUMMARY: processing the following file failed: - ‘ClustAssess.Rmd’ - -Error: Vignette re-building failed. +* installing *source* package ‘contrast’ ... +** package ‘contrast’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted - -* DONE -Status: 1 ERROR, 1 WARNING, 2 NOTEs - - - +ERROR: lazy loading failed for package ‘contrast’ +* removing ‘/tmp/workdir/contrast/old/contrast.Rcheck/contrast’ ``` -# clustree +# coxed
-* Version: 0.5.1 -* GitHub: https://github.com/lazappi/clustree -* Source code: https://github.com/cran/clustree -* Date/Publication: 2023-11-05 19:10:02 UTC -* Number of recursive dependencies: 192 +* Version: 0.3.3 +* GitHub: https://github.com/jkropko/coxed +* Source code: https://github.com/cran/coxed +* Date/Publication: 2020-08-02 01:20:07 UTC +* Number of recursive dependencies: 95 -Run `revdepcheck::cloud_details(, "clustree")` for more info +Run `revdepcheck::cloud_details(, "coxed")` for more info
-## Error before installation - -### Devel +## In both -``` -* using log directory ‘/tmp/workdir/clustree/new/clustree.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘clustree/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘spelling.R’ - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘clustree.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE +* checking whether package ‘coxed’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/coxed/new/coxed.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘coxed’ ... +** package ‘coxed’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘coxed’ +* removing ‘/tmp/workdir/coxed/new/coxed.Rcheck/coxed’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/clustree/old/clustree.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘clustree/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘spelling.R’ - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘clustree.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - +* installing *source* package ‘coxed’ ... +** package ‘coxed’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘coxed’ +* removing ‘/tmp/workdir/coxed/old/coxed.Rcheck/coxed’ ``` -# cmprskcoxmsm +# CRMetrics
-* Version: 0.2.1 -* GitHub: NA -* Source code: https://github.com/cran/cmprskcoxmsm -* Date/Publication: 2021-09-04 05:50:02 UTC -* Number of recursive dependencies: 71 +* Version: 0.3.0 +* GitHub: https://github.com/khodosevichlab/CRMetrics +* Source code: https://github.com/cran/CRMetrics +* Date/Publication: 2023-09-01 09:00:06 UTC +* Number of recursive dependencies: 239 -Run `revdepcheck::cloud_details(, "cmprskcoxmsm")` for more info +Run `revdepcheck::cloud_details(, "CRMetrics")` for more info
## In both -* checking whether package ‘cmprskcoxmsm’ can be installed ... ERROR +* checking whether package ‘CRMetrics’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck/00install.out’ for details. ``` ## Installation @@ -1654,213 +1539,59 @@ Run `revdepcheck::cloud_details(, "cmprskcoxmsm")` for more info ### Devel ``` -* installing *source* package ‘cmprskcoxmsm’ ... -** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked +* installing *source* package ‘CRMetrics’ ... +** package ‘CRMetrics’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘cmprskcoxmsm’ -* removing ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/cmprskcoxmsm’ +ERROR: lazy loading failed for package ‘CRMetrics’ +* removing ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck/CRMetrics’ ``` ### CRAN ``` -* installing *source* package ‘cmprskcoxmsm’ ... -** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked +* installing *source* package ‘CRMetrics’ ... +** package ‘CRMetrics’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘cmprskcoxmsm’ -* removing ‘/tmp/workdir/cmprskcoxmsm/old/cmprskcoxmsm.Rcheck/cmprskcoxmsm’ - - -``` -# combiroc - -
- -* Version: 0.3.4 -* GitHub: https://github.com/ingmbioinfo/combiroc -* Source code: https://github.com/cran/combiroc -* Date/Publication: 2023-07-06 12:53:12 UTC -* Number of recursive dependencies: 160 - -Run `revdepcheck::cloud_details(, "combiroc")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/combiroc/new/combiroc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘combiroc/DESCRIPTION’ ... OK -... - - When sourcing ‘combiroc_vignette_2.R’: -Error: Cannot find the file(s): "/tmp/RtmpA38BUi/file1c6675fecb04/vignettes/vignettes/atlas_dimplot.png" -Execution halted - - ‘combiroc_vignette_1.Rmd’ using ‘UTF-8’... OK - ‘combiroc_vignette_2.Rmd’ using ‘UTF-8’... failed -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/combiroc/old/combiroc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘combiroc/DESCRIPTION’ ... OK -... - - When sourcing ‘combiroc_vignette_2.R’: -Error: Cannot find the file(s): "/tmp/RtmpD5SHHa/file14446c22f1bc/vignettes/vignettes/atlas_dimplot.png" -Execution halted - - ‘combiroc_vignette_1.Rmd’ using ‘UTF-8’... OK - ‘combiroc_vignette_2.Rmd’ using ‘UTF-8’... failed -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -# conos - -
- -* Version: 1.5.2 -* GitHub: https://github.com/kharchenkolab/conos -* Source code: https://github.com/cran/conos -* Date/Publication: 2024-02-26 19:30:05 UTC -* Number of recursive dependencies: 239 - -Run `revdepcheck::cloud_details(, "conos")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/conos/new/conos.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘conos/DESCRIPTION’ ... OK -... -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/conos/old/conos.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘conos/DESCRIPTION’ ... OK -... -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 2 NOTEs - - - +ERROR: lazy loading failed for package ‘CRMetrics’ +* removing ‘/tmp/workdir/CRMetrics/old/CRMetrics.Rcheck/CRMetrics’ ``` -# contrast +# csmpv
-* Version: 0.24.2 -* GitHub: https://github.com/Alanocallaghan/contrast -* Source code: https://github.com/cran/contrast -* Date/Publication: 2022-10-05 17:20:09 UTC -* Number of recursive dependencies: 112 +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/csmpv +* Date/Publication: 2024-03-01 18:12:44 UTC +* Number of recursive dependencies: 178 -Run `revdepcheck::cloud_details(, "contrast")` for more info +Run `revdepcheck::cloud_details(, "csmpv")` for more info
## In both -* checking whether package ‘contrast’ can be installed ... ERROR +* checking whether package ‘csmpv’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/contrast/new/contrast.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/csmpv/new/csmpv.Rcheck/00install.out’ for details. ``` ## Installation @@ -1868,8 +1599,8 @@ Run `revdepcheck::cloud_details(, "contrast")` for more info ### Devel ``` -* installing *source* package ‘contrast’ ... -** package ‘contrast’ successfully unpacked and MD5 sums checked +* installing *source* package ‘csmpv’ ... +** package ‘csmpv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data @@ -1880,16 +1611,16 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘contrast’ -* removing ‘/tmp/workdir/contrast/new/contrast.Rcheck/contrast’ +ERROR: lazy loading failed for package ‘csmpv’ +* removing ‘/tmp/workdir/csmpv/new/csmpv.Rcheck/csmpv’ ``` ### CRAN ``` -* installing *source* package ‘contrast’ ... -** package ‘contrast’ successfully unpacked and MD5 sums checked +* installing *source* package ‘csmpv’ ... +** package ‘csmpv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data @@ -1900,107 +1631,109 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘contrast’ -* removing ‘/tmp/workdir/contrast/old/contrast.Rcheck/contrast’ +ERROR: lazy loading failed for package ‘csmpv’ +* removing ‘/tmp/workdir/csmpv/old/csmpv.Rcheck/csmpv’ ``` -# countland +# ctsem
-* Version: 0.1.2 -* GitHub: https://github.com/shchurch/countland -* Source code: https://github.com/cran/countland -* Date/Publication: 2024-02-01 18:00:02 UTC -* Number of recursive dependencies: 199 +* Version: 3.10.0 +* GitHub: https://github.com/cdriveraus/ctsem +* Source code: https://github.com/cran/ctsem +* Date/Publication: 2024-05-09 14:40:03 UTC +* Number of recursive dependencies: 158 -Run `revdepcheck::cloud_details(, "countland")` for more info +Run `revdepcheck::cloud_details(, "ctsem")` for more info
-## Error before installation +## In both + +* checking whether package ‘ctsem’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. + ``` + +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/countland/new/countland.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘countland/DESCRIPTION’ ... OK -... - 1. └─base::loadNamespace(x) at test-countland_subset.R:2:1 - 2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) - 3. └─base (local) withOneRestart(expr, restarts[[1L]]) - 4. └─base (local) doWithOneRestart(return(expr), restart) - - [ FAIL 7 | WARN 0 | SKIP 0 | PASS 13 ] - Error: Test failures - Execution halted -* DONE -Status: 2 ERRORs, 1 NOTE - +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/countland/old/countland.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘countland/DESCRIPTION’ ... OK -... - 1. └─base::loadNamespace(x) at test-countland_subset.R:2:1 - 2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) - 3. └─base (local) withOneRestart(expr, restarts[[1L]]) - 4. └─base (local) doWithOneRestart(return(expr), restart) - - [ FAIL 7 | WARN 0 | SKIP 0 | PASS 13 ] - Error: Test failures - Execution halted -* DONE -Status: 2 ERRORs, 1 NOTE - +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ ``` -# coxed +# DepthProc
-* Version: 0.3.3 -* GitHub: https://github.com/jkropko/coxed -* Source code: https://github.com/cran/coxed -* Date/Publication: 2020-08-02 01:20:07 UTC -* Number of recursive dependencies: 109 +* Version: 2.1.5 +* GitHub: https://github.com/zzawadz/DepthProc +* Source code: https://github.com/cran/DepthProc +* Date/Publication: 2022-02-03 20:30:02 UTC +* Number of recursive dependencies: 134 -Run `revdepcheck::cloud_details(, "coxed")` for more info +Run `revdepcheck::cloud_details(, "DepthProc")` for more info
## In both -* checking whether package ‘coxed’ can be installed ... ERROR +* checking whether package ‘DepthProc’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/coxed/new/coxed.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/00install.out’ for details. ``` ## Installation @@ -2008,137 +1741,155 @@ Run `revdepcheck::cloud_details(, "coxed")` for more info ### Devel ``` -* installing *source* package ‘coxed’ ... -** package ‘coxed’ successfully unpacked and MD5 sums checked +* installing *source* package ‘DepthProc’ ... +** package ‘DepthProc’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o +... +installing to /tmp/workdir/DepthProc/new/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs ** R ** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘coxed’ -* removing ‘/tmp/workdir/coxed/new/coxed.Rcheck/coxed’ +ERROR: lazy loading failed for package ‘DepthProc’ +* removing ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/DepthProc’ ``` ### CRAN ``` -* installing *source* package ‘coxed’ ... -** package ‘coxed’ successfully unpacked and MD5 sums checked +* installing *source* package ‘DepthProc’ ... +** package ‘DepthProc’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o +... +installing to /tmp/workdir/DepthProc/old/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs ** R ** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘coxed’ -* removing ‘/tmp/workdir/coxed/old/coxed.Rcheck/coxed’ +ERROR: lazy loading failed for package ‘DepthProc’ +* removing ‘/tmp/workdir/DepthProc/old/DepthProc.Rcheck/DepthProc’ ``` -# CRMetrics +# DR.SC
-* Version: 0.3.0 -* GitHub: https://github.com/khodosevichlab/CRMetrics -* Source code: https://github.com/cran/CRMetrics -* Date/Publication: 2023-09-01 09:00:06 UTC -* Number of recursive dependencies: 235 +* Version: 3.4 +* GitHub: https://github.com/feiyoung/DR.SC +* Source code: https://github.com/cran/DR.SC +* Date/Publication: 2024-03-19 08:40:02 UTC +* Number of recursive dependencies: 151 -Run `revdepcheck::cloud_details(, "CRMetrics")` for more info +Run `revdepcheck::cloud_details(, "DR.SC")` for more info
-## Error before installation +## In both + +* checking whether package ‘DR.SC’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/00install.out’ for details. + ``` + +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘CRMetrics/DESCRIPTION’ ... OK +* installing *source* package ‘DR.SC’ ... +** package ‘DR.SC’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c getNB_fast.cpp -o getNB_fast.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job.cpp -o mt_paral_job.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job2.cpp -o mt_paral_job2.o ... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘ggpmisc’ - -Package suggested but not available for checking: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘DR.SC’ +* removing ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/DR.SC’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/CRMetrics/old/CRMetrics.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘CRMetrics/DESCRIPTION’ ... OK +* installing *source* package ‘DR.SC’ ... +** package ‘DR.SC’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c getNB_fast.cpp -o getNB_fast.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job.cpp -o mt_paral_job.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job2.cpp -o mt_paral_job2.o ... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘ggpmisc’ - -Package suggested but not available for checking: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘DR.SC’ +* removing ‘/tmp/workdir/DR.SC/old/DR.SC.Rcheck/DR.SC’ ``` -# csmpv +# DynNom
-* Version: 1.0.3 +* Version: 5.1 * GitHub: NA -* Source code: https://github.com/cran/csmpv -* Date/Publication: 2024-03-01 18:12:44 UTC -* Number of recursive dependencies: 175 +* Source code: https://github.com/cran/DynNom +* Date/Publication: 2024-06-07 12:20:21 UTC +* Number of recursive dependencies: 104 -Run `revdepcheck::cloud_details(, "csmpv")` for more info +Run `revdepcheck::cloud_details(, "DynNom")` for more info
## In both -* checking whether package ‘csmpv’ can be installed ... ERROR +* checking whether package ‘DynNom’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/csmpv/new/csmpv.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/DynNom/new/DynNom.Rcheck/00install.out’ for details. ``` ## Installation @@ -2146,64 +1897,57 @@ Run `revdepcheck::cloud_details(, "csmpv")` for more info ### Devel ``` -* installing *source* package ‘csmpv’ ... -** package ‘csmpv’ successfully unpacked and MD5 sums checked +* installing *source* package ‘DynNom’ ... +** package ‘DynNom’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading -Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘csmpv’ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘csmpv’ -* removing ‘/tmp/workdir/csmpv/new/csmpv.Rcheck/csmpv’ +ERROR: lazy loading failed for package ‘DynNom’ +* removing ‘/tmp/workdir/DynNom/new/DynNom.Rcheck/DynNom’ ``` ### CRAN ``` -* installing *source* package ‘csmpv’ ... -** package ‘csmpv’ successfully unpacked and MD5 sums checked +* installing *source* package ‘DynNom’ ... +** package ‘DynNom’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘csmpv’ -* removing ‘/tmp/workdir/csmpv/old/csmpv.Rcheck/csmpv’ +ERROR: lazy loading failed for package ‘DynNom’ +* removing ‘/tmp/workdir/DynNom/old/DynNom.Rcheck/DynNom’ ``` -# ctsem +# easybgm
-* Version: 3.10.0 -* GitHub: https://github.com/cdriveraus/ctsem -* Source code: https://github.com/cran/ctsem -* Date/Publication: 2024-05-09 14:40:03 UTC -* Number of recursive dependencies: 159 +* Version: 0.1.2 +* GitHub: https://github.com/KarolineHuth/easybgm +* Source code: https://github.com/cran/easybgm +* Date/Publication: 2024-03-13 13:40:02 UTC +* Number of recursive dependencies: 174 -Run `revdepcheck::cloud_details(, "ctsem")` for more info +Run `revdepcheck::cloud_details(, "easybgm")` for more info
## In both -* checking whether package ‘ctsem’ can be installed ... ERROR +* checking whether package ‘easybgm’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/easybgm/new/easybgm.Rcheck/00install.out’ for details. ``` ## Installation @@ -2211,153 +1955,117 @@ Run `revdepcheck::cloud_details(, "ctsem")` for more info ### Devel ``` -* installing *source* package ‘ctsem’ ... -** package ‘ctsem’ successfully unpacked and MD5 sums checked +* installing *source* package ‘easybgm’ ... +** package ‘easybgm’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 -ERROR: compilation failed for package ‘ctsem’ -* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘easybgm’ +* removing ‘/tmp/workdir/easybgm/new/easybgm.Rcheck/easybgm’ ``` ### CRAN ``` -* installing *source* package ‘ctsem’ ... -** package ‘ctsem’ successfully unpacked and MD5 sums checked +* installing *source* package ‘easybgm’ ... +** package ‘easybgm’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 -ERROR: compilation failed for package ‘ctsem’ -* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘easybgm’ +* removing ‘/tmp/workdir/easybgm/old/easybgm.Rcheck/easybgm’ ``` -# CytoSimplex +# ecolottery
-* Version: 0.1.1 -* GitHub: https://github.com/welch-lab/CytoSimplex -* Source code: https://github.com/cran/CytoSimplex -* Date/Publication: 2023-12-15 09:30:06 UTC -* Number of recursive dependencies: 177 +* Version: 1.0.0 +* GitHub: https://github.com/frmunoz/ecolottery +* Source code: https://github.com/cran/ecolottery +* Date/Publication: 2017-07-03 11:01:29 UTC +* Number of recursive dependencies: 88 -Run `revdepcheck::cloud_details(, "CytoSimplex")` for more info +Run `revdepcheck::cloud_details(, "ecolottery")` for more info
-## Error before installation - -### Devel +## In both -``` -* using log directory ‘/tmp/workdir/CytoSimplex/new/CytoSimplex.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘CytoSimplex/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘CytoSimplex.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs +* checking whether package ‘ecolottery’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘ecolottery’ ... +** package ‘ecolottery’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ecolottery’ +* removing ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/ecolottery’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/CytoSimplex/old/CytoSimplex.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘CytoSimplex/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘CytoSimplex.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - +* installing *source* package ‘ecolottery’ ... +** package ‘ecolottery’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ecolottery’ +* removing ‘/tmp/workdir/ecolottery/old/ecolottery.Rcheck/ecolottery’ ``` -# DepthProc +# EpiEstim
-* Version: 2.1.5 -* GitHub: https://github.com/zzawadz/DepthProc -* Source code: https://github.com/cran/DepthProc -* Date/Publication: 2022-02-03 20:30:02 UTC -* Number of recursive dependencies: 134 +* Version: 2.2-4 +* GitHub: https://github.com/mrc-ide/EpiEstim +* Source code: https://github.com/cran/EpiEstim +* Date/Publication: 2021-01-07 16:20:10 UTC +* Number of recursive dependencies: 91 -Run `revdepcheck::cloud_details(, "DepthProc")` for more info +Run `revdepcheck::cloud_details(, "EpiEstim")` for more info
## In both -* checking whether package ‘DepthProc’ can be installed ... ERROR +* checking whether package ‘EpiEstim’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/00install.out’ for details. ``` ## Installation @@ -2365,305 +2073,203 @@ Run `revdepcheck::cloud_details(, "DepthProc")` for more info ### Devel ``` -* installing *source* package ‘DepthProc’ ... -** package ‘DepthProc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘EpiEstim’ ... +** package ‘EpiEstim’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o -... -installing to /tmp/workdir/DepthProc/new/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘DepthProc’ -* removing ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/DepthProc’ +ERROR: lazy loading failed for package ‘EpiEstim’ +* removing ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/EpiEstim’ ``` ### CRAN ``` -* installing *source* package ‘DepthProc’ ... -** package ‘DepthProc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘EpiEstim’ ... +** package ‘EpiEstim’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o -... -installing to /tmp/workdir/DepthProc/old/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘DepthProc’ -* removing ‘/tmp/workdir/DepthProc/old/DepthProc.Rcheck/DepthProc’ +ERROR: lazy loading failed for package ‘EpiEstim’ +* removing ‘/tmp/workdir/EpiEstim/old/EpiEstim.Rcheck/EpiEstim’ ``` -# DIscBIO +# evolqg
-* Version: 1.2.2 -* GitHub: https://github.com/ocbe-uio/DIscBIO -* Source code: https://github.com/cran/DIscBIO -* Date/Publication: 2023-11-06 10:50:02 UTC -* Number of recursive dependencies: 209 +* Version: 0.3-4 +* GitHub: https://github.com/lem-usp/evolqg +* Source code: https://github.com/cran/evolqg +* Date/Publication: 2023-12-05 15:20:12 UTC +* Number of recursive dependencies: 111 -Run `revdepcheck::cloud_details(, "DIscBIO")` for more info +Run `revdepcheck::cloud_details(, "evolqg")` for more info
-## Error before installation - -### Devel +## In both -``` -* using log directory ‘/tmp/workdir/DIscBIO/new/DIscBIO.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘DIscBIO/DESCRIPTION’ ... OK -... -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking contents of ‘data’ directory ... OK -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking examples ... OK -* DONE -Status: 1 NOTE +* checking whether package ‘evolqg’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘evolqg’ ... +** package ‘evolqg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/evolqg/new/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘evolqg’ +* removing ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/evolqg’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/DIscBIO/old/DIscBIO.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘DIscBIO/DESCRIPTION’ ... OK -... -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking contents of ‘data’ directory ... OK -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking examples ... OK -* DONE -Status: 1 NOTE - - - +* installing *source* package ‘evolqg’ ... +** package ‘evolqg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/evolqg/old/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘evolqg’ +* removing ‘/tmp/workdir/evolqg/old/evolqg.Rcheck/evolqg’ ``` -# DR.SC +# ForecastComb
-* Version: 3.4 -* GitHub: https://github.com/feiyoung/DR.SC -* Source code: https://github.com/cran/DR.SC -* Date/Publication: 2024-03-19 08:40:02 UTC -* Number of recursive dependencies: 150 - -Run `revdepcheck::cloud_details(, "DR.SC")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘DR.SC/DESCRIPTION’ ... OK -... -* this is package ‘DR.SC’ version ‘3.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/DR.SC/old/DR.SC.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘DR.SC/DESCRIPTION’ ... OK -... -* this is package ‘DR.SC’ version ‘3.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dyngen +* Version: 1.3.1 +* GitHub: https://github.com/ceweiss/ForecastComb +* Source code: https://github.com/cran/ForecastComb +* Date/Publication: 2018-08-07 13:50:08 UTC +* Number of recursive dependencies: 74 -
+Run `revdepcheck::cloud_details(, "ForecastComb")` for more info -* Version: 1.0.5 -* GitHub: https://github.com/dynverse/dyngen -* Source code: https://github.com/cran/dyngen -* Date/Publication: 2022-10-12 15:22:39 UTC -* Number of recursive dependencies: 209 +
-Run `revdepcheck::cloud_details(, "dyngen")` for more info +## In both -
+* checking whether package ‘ForecastComb’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/00install.out’ for details. + ``` -## Error before installation +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/dyngen/new/dyngen.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dyngen/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘getting_started.html.asis’ using ‘UTF-8’... OK - ‘installation.html.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - +* installing *source* package ‘ForecastComb’ ... +** package ‘ForecastComb’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ForecastComb’ +* removing ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/ForecastComb’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/dyngen/old/dyngen.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dyngen/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘getting_started.html.asis’ using ‘UTF-8’... OK - ‘installation.html.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - +* installing *source* package ‘ForecastComb’ ... +** package ‘ForecastComb’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ForecastComb’ +* removing ‘/tmp/workdir/ForecastComb/old/ForecastComb.Rcheck/ForecastComb’ ``` -# EcoEnsemble +# gapfill
-* Version: 1.0.5 -* GitHub: NA -* Source code: https://github.com/cran/EcoEnsemble -* Date/Publication: 2023-09-18 11:50:02 UTC -* Number of recursive dependencies: 91 +* Version: 0.9.6-1 +* GitHub: https://github.com/florafauna/gapfill +* Source code: https://github.com/cran/gapfill +* Date/Publication: 2021-02-12 10:10:05 UTC +* Number of recursive dependencies: 71 -Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info +Run `revdepcheck::cloud_details(, "gapfill")` for more info
## In both -* checking whether package ‘EcoEnsemble’ can be installed ... ERROR +* checking whether package ‘gapfill’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'raster', 'doParallel', 'doMPI' ``` ## Installation @@ -2671,77 +2277,77 @@ Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info ### Devel ``` -* installing *source* package ‘EcoEnsemble’ ... -** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +* installing *source* package ‘gapfill’ ... +** package ‘gapfill’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/gapfill/new/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs +** R ... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -stanExports_ensemble_model_hierarchical.cc:32:1: fatal error: error writing to /tmp/ccqp74mc.s: Cannot allocate memory - 32 | } - | ^ -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 -ERROR: compilation failed for package ‘EcoEnsemble’ -* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘gapfill’ +* removing ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/gapfill’ ``` ### CRAN ``` -* installing *source* package ‘EcoEnsemble’ ... -** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +* installing *source* package ‘gapfill’ ... +** package ‘gapfill’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/gapfill/old/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs +** R ... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 -ERROR: compilation failed for package ‘EcoEnsemble’ -* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘gapfill’ +* removing ‘/tmp/workdir/gapfill/old/gapfill.Rcheck/gapfill’ ``` -# ecolottery +# GeomComb
-* Version: 1.0.0 -* GitHub: https://github.com/frmunoz/ecolottery -* Source code: https://github.com/cran/ecolottery -* Date/Publication: 2017-07-03 11:01:29 UTC -* Number of recursive dependencies: 88 +* Version: 1.0 +* GitHub: https://github.com/ceweiss/GeomComb +* Source code: https://github.com/cran/GeomComb +* Date/Publication: 2016-11-27 16:02:26 +* Number of recursive dependencies: 75 -Run `revdepcheck::cloud_details(, "ecolottery")` for more info +Run `revdepcheck::cloud_details(, "GeomComb")` for more info
## In both -* checking whether package ‘ecolottery’ can be installed ... ERROR +* checking whether package ‘GeomComb’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/00install.out’ for details. ``` ## Installation @@ -2749,59 +2355,57 @@ Run `revdepcheck::cloud_details(, "ecolottery")` for more info ### Devel ``` -* installing *source* package ‘ecolottery’ ... -** package ‘ecolottery’ successfully unpacked and MD5 sums checked +* installing *source* package ‘GeomComb’ ... +** package ‘GeomComb’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘ecolottery’ -* removing ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/ecolottery’ +ERROR: lazy loading failed for package ‘GeomComb’ +* removing ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/GeomComb’ ``` ### CRAN ``` -* installing *source* package ‘ecolottery’ ... -** package ‘ecolottery’ successfully unpacked and MD5 sums checked +* installing *source* package ‘GeomComb’ ... +** package ‘GeomComb’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘ecolottery’ -* removing ‘/tmp/workdir/ecolottery/old/ecolottery.Rcheck/ecolottery’ +ERROR: lazy loading failed for package ‘GeomComb’ +* removing ‘/tmp/workdir/GeomComb/old/GeomComb.Rcheck/GeomComb’ ``` -# EpiEstim +# ggrcs
-* Version: 2.2-4 -* GitHub: https://github.com/mrc-ide/EpiEstim -* Source code: https://github.com/cran/EpiEstim -* Date/Publication: 2021-01-07 16:20:10 UTC -* Number of recursive dependencies: 91 +* Version: 0.4.0 +* GitHub: NA +* Source code: https://github.com/cran/ggrcs +* Date/Publication: 2024-06-29 02:40:02 UTC +* Number of recursive dependencies: 78 -Run `revdepcheck::cloud_details(, "EpiEstim")` for more info +Run `revdepcheck::cloud_details(, "ggrcs")` for more info
## In both -* checking whether package ‘EpiEstim’ can be installed ... ERROR +* checking whether package ‘ggrcs’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/ggrcs/new/ggrcs.Rcheck/00install.out’ for details. ``` ## Installation @@ -2809,61 +2413,63 @@ Run `revdepcheck::cloud_details(, "EpiEstim")` for more info ### Devel ``` -* installing *source* package ‘EpiEstim’ ... -** package ‘EpiEstim’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggrcs’ ... +** package ‘ggrcs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘EpiEstim’ -* removing ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/EpiEstim’ +ERROR: lazy loading failed for package ‘ggrcs’ +* removing ‘/tmp/workdir/ggrcs/new/ggrcs.Rcheck/ggrcs’ ``` ### CRAN ``` -* installing *source* package ‘EpiEstim’ ... -** package ‘EpiEstim’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggrcs’ ... +** package ‘ggrcs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘EpiEstim’ -* removing ‘/tmp/workdir/EpiEstim/old/EpiEstim.Rcheck/EpiEstim’ +ERROR: lazy loading failed for package ‘ggrcs’ +* removing ‘/tmp/workdir/ggrcs/old/ggrcs.Rcheck/ggrcs’ ``` -# evolqg +# ggrisk
-* Version: 0.3-4 -* GitHub: https://github.com/lem-usp/evolqg -* Source code: https://github.com/cran/evolqg -* Date/Publication: 2023-12-05 15:20:12 UTC -* Number of recursive dependencies: 111 +* Version: 1.3 +* GitHub: https://github.com/yikeshu0611/ggrisk +* Source code: https://github.com/cran/ggrisk +* Date/Publication: 2021-08-09 07:40:06 UTC +* Number of recursive dependencies: 115 -Run `revdepcheck::cloud_details(, "evolqg")` for more info +Run `revdepcheck::cloud_details(, "ggrisk")` for more info
## In both -* checking whether package ‘evolqg’ can be installed ... ERROR +* checking whether package ‘ggrisk’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/ggrisk/new/ggrisk.Rcheck/00install.out’ for details. ``` ## Installation @@ -2871,73 +2477,61 @@ Run `revdepcheck::cloud_details(, "evolqg")` for more info ### Devel ``` -* installing *source* package ‘evolqg’ ... -** package ‘evolqg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggrisk’ ... +** package ‘ggrisk’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/evolqg/new/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs ** R ** data -** inst +*** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘evolqg’ -* removing ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/evolqg’ +ERROR: lazy loading failed for package ‘ggrisk’ +* removing ‘/tmp/workdir/ggrisk/new/ggrisk.Rcheck/ggrisk’ ``` ### CRAN ``` -* installing *source* package ‘evolqg’ ... -** package ‘evolqg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggrisk’ ... +** package ‘ggrisk’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/evolqg/old/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs ** R ** data -** inst +*** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘evolqg’ -* removing ‘/tmp/workdir/evolqg/old/evolqg.Rcheck/evolqg’ +ERROR: lazy loading failed for package ‘ggrisk’ +* removing ‘/tmp/workdir/ggrisk/old/ggrisk.Rcheck/ggrisk’ ``` -# ForecastComb +# gJLS2
-* Version: 1.3.1 -* GitHub: https://github.com/ceweiss/ForecastComb -* Source code: https://github.com/cran/ForecastComb -* Date/Publication: 2018-08-07 13:50:08 UTC -* Number of recursive dependencies: 73 +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/gJLS2 +* Date/Publication: 2021-09-30 09:00:05 UTC +* Number of recursive dependencies: 45 -Run `revdepcheck::cloud_details(, "ForecastComb")` for more info +Run `revdepcheck::cloud_details(, "gJLS2")` for more info
## In both -* checking whether package ‘ForecastComb’ can be installed ... ERROR +* checking whether package ‘gJLS2’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/00install.out’ for details. ``` ## Installation @@ -2945,67 +2539,63 @@ Run `revdepcheck::cloud_details(, "ForecastComb")` for more info ### Devel ``` -* installing *source* package ‘ForecastComb’ ... -** package ‘ForecastComb’ successfully unpacked and MD5 sums checked +* installing *source* package ‘gJLS2’ ... +** package ‘gJLS2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘ForecastComb’ -* removing ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/ForecastComb’ +ERROR: lazy loading failed for package ‘gJLS2’ +* removing ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/gJLS2’ ``` ### CRAN ``` -* installing *source* package ‘ForecastComb’ ... -** package ‘ForecastComb’ successfully unpacked and MD5 sums checked +* installing *source* package ‘gJLS2’ ... +** package ‘gJLS2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘ForecastComb’ -* removing ‘/tmp/workdir/ForecastComb/old/ForecastComb.Rcheck/ForecastComb’ +ERROR: lazy loading failed for package ‘gJLS2’ +* removing ‘/tmp/workdir/gJLS2/old/gJLS2.Rcheck/gJLS2’ ``` -# gapfill +# Greg
-* Version: 0.9.6-1 -* GitHub: https://github.com/florafauna/gapfill -* Source code: https://github.com/cran/gapfill -* Date/Publication: 2021-02-12 10:10:05 UTC -* Number of recursive dependencies: 71 +* Version: 2.0.2 +* GitHub: https://github.com/gforge/Greg +* Source code: https://github.com/cran/Greg +* Date/Publication: 2024-01-29 13:30:21 UTC +* Number of recursive dependencies: 151 -Run `revdepcheck::cloud_details(, "gapfill")` for more info +Run `revdepcheck::cloud_details(, "Greg")` for more info
## In both -* checking whether package ‘gapfill’ can be installed ... ERROR +* checking whether package ‘Greg’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Packages which this enhances but not available for checking: - 'raster', 'doParallel', 'doMPI' + See ‘/tmp/workdir/Greg/new/Greg.Rcheck/00install.out’ for details. ``` ## Installation @@ -3013,77 +2603,59 @@ Run `revdepcheck::cloud_details(, "gapfill")` for more info ### Devel ``` -* installing *source* package ‘gapfill’ ... -** package ‘gapfill’ successfully unpacked and MD5 sums checked +* installing *source* package ‘Greg’ ... +** package ‘Greg’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/gapfill/new/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs ** R -... -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘gapfill’ -* removing ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/gapfill’ +ERROR: lazy loading failed for package ‘Greg’ +* removing ‘/tmp/workdir/Greg/new/Greg.Rcheck/Greg’ ``` ### CRAN ``` -* installing *source* package ‘gapfill’ ... -** package ‘gapfill’ successfully unpacked and MD5 sums checked +* installing *source* package ‘Greg’ ... +** package ‘Greg’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/gapfill/old/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs ** R -... -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘gapfill’ -* removing ‘/tmp/workdir/gapfill/old/gapfill.Rcheck/gapfill’ +ERROR: lazy loading failed for package ‘Greg’ +* removing ‘/tmp/workdir/Greg/old/Greg.Rcheck/Greg’ ``` -# GeomComb +# greport
-* Version: 1.0 -* GitHub: https://github.com/ceweiss/GeomComb -* Source code: https://github.com/cran/GeomComb -* Date/Publication: 2016-11-27 16:02:26 -* Number of recursive dependencies: 74 +* Version: 0.7-4 +* GitHub: https://github.com/harrelfe/greport +* Source code: https://github.com/cran/greport +* Date/Publication: 2023-09-02 22:20:02 UTC +* Number of recursive dependencies: 84 -Run `revdepcheck::cloud_details(, "GeomComb")` for more info +Run `revdepcheck::cloud_details(, "greport")` for more info
## In both -* checking whether package ‘GeomComb’ can be installed ... ERROR +* checking whether package ‘greport’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/greport/new/greport.Rcheck/00install.out’ for details. ``` ## Installation @@ -3091,78 +2663,59 @@ Run `revdepcheck::cloud_details(, "GeomComb")` for more info ### Devel ``` -* installing *source* package ‘GeomComb’ ... -** package ‘GeomComb’ successfully unpacked and MD5 sums checked +* installing *source* package ‘greport’ ... +** package ‘greport’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘GeomComb’ -* removing ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/GeomComb’ +ERROR: lazy loading failed for package ‘greport’ +* removing ‘/tmp/workdir/greport/new/greport.Rcheck/greport’ ``` ### CRAN ``` -* installing *source* package ‘GeomComb’ ... -** package ‘GeomComb’ successfully unpacked and MD5 sums checked +* installing *source* package ‘greport’ ... +** package ‘greport’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘GeomComb’ -* removing ‘/tmp/workdir/GeomComb/old/GeomComb.Rcheck/GeomComb’ +ERROR: lazy loading failed for package ‘greport’ +* removing ‘/tmp/workdir/greport/old/greport.Rcheck/greport’ ``` -# geostan +# hettx
-* Version: 0.6.1 -* GitHub: https://github.com/ConnorDonegan/geostan -* Source code: https://github.com/cran/geostan -* Date/Publication: 2024-05-10 22:23:01 UTC -* Number of recursive dependencies: 108 +* Version: 0.1.3 +* GitHub: https://github.com/bfifield/hettx +* Source code: https://github.com/cran/hettx +* Date/Publication: 2023-08-19 22:22:34 UTC +* Number of recursive dependencies: 85 -Run `revdepcheck::cloud_details(, "geostan")` for more info +Run `revdepcheck::cloud_details(, "hettx")` for more info
-## Newly broken +## In both -* checking whether package ‘geostan’ can be installed ... ERROR +* checking whether package ‘hettx’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/geostan/new/geostan.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking installed package size ... NOTE - ``` - installed size is 129.8Mb - sub-directories of 1Mb or more: - libs 127.6Mb - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘RcppParallel’ ‘rstantools’ - All declared Imports should be used. - ``` - -* checking for GNU extensions in Makefiles ... NOTE - ``` - GNU make is a SystemRequirements. + See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details. ``` ## Installation @@ -3170,77 +2723,63 @@ Run `revdepcheck::cloud_details(, "geostan")` for more info ### Devel ``` -* installing *source* package ‘geostan’ ... -** package ‘geostan’ successfully unpacked and MD5 sums checked +* installing *source* package ‘hettx’ ... +** package ‘hettx’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -stanExports_foundation.cc:32:1: fatal error: error writing to /tmp/cccy6wQ6.s: Cannot allocate memory - 32 | } - | ^ -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_foundation.o] Error 1 -ERROR: compilation failed for package ‘geostan’ -* removing ‘/tmp/workdir/geostan/new/geostan.Rcheck/geostan’ +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘hettx’ +* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’ ``` ### CRAN ``` -* installing *source* package ‘geostan’ ... -** package ‘geostan’ successfully unpacked and MD5 sums checked +* installing *source* package ‘hettx’ ... +** package ‘hettx’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -** help -*** installing help indices -*** copying figures -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** checking absolute paths in shared objects and dynamic libraries -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (geostan) +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘hettx’ +* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’ ``` -# ggrcs +# hIRT
-* Version: 0.3.8 -* GitHub: NA -* Source code: https://github.com/cran/ggrcs -* Date/Publication: 2024-01-30 03:20:08 UTC -* Number of recursive dependencies: 78 +* Version: 0.3.0 +* GitHub: https://github.com/xiangzhou09/hIRT +* Source code: https://github.com/cran/hIRT +* Date/Publication: 2020-03-26 17:10:02 UTC +* Number of recursive dependencies: 88 -Run `revdepcheck::cloud_details(, "ggrcs")` for more info +Run `revdepcheck::cloud_details(, "hIRT")` for more info
## In both -* checking whether package ‘ggrcs’ can be installed ... ERROR +* checking whether package ‘hIRT’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/ggrcs/new/ggrcs.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/hIRT/new/hIRT.Rcheck/00install.out’ for details. ``` ## Installation @@ -3248,63 +2787,61 @@ Run `revdepcheck::cloud_details(, "ggrcs")` for more info ### Devel ``` -* installing *source* package ‘ggrcs’ ... -** package ‘ggrcs’ successfully unpacked and MD5 sums checked +* installing *source* package ‘hIRT’ ... +** package ‘hIRT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘ggrcs’ -* removing ‘/tmp/workdir/ggrcs/new/ggrcs.Rcheck/ggrcs’ +ERROR: lazy loading failed for package ‘hIRT’ +* removing ‘/tmp/workdir/hIRT/new/hIRT.Rcheck/hIRT’ ``` ### CRAN ``` -* installing *source* package ‘ggrcs’ ... -** package ‘ggrcs’ successfully unpacked and MD5 sums checked +* installing *source* package ‘hIRT’ ... +** package ‘hIRT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘ggrcs’ -* removing ‘/tmp/workdir/ggrcs/old/ggrcs.Rcheck/ggrcs’ +ERROR: lazy loading failed for package ‘hIRT’ +* removing ‘/tmp/workdir/hIRT/old/hIRT.Rcheck/hIRT’ ``` -# ggrisk +# Hmsc
-* Version: 1.3 -* GitHub: https://github.com/yikeshu0611/ggrisk -* Source code: https://github.com/cran/ggrisk -* Date/Publication: 2021-08-09 07:40:06 UTC -* Number of recursive dependencies: 115 +* Version: 3.0-13 +* GitHub: https://github.com/hmsc-r/HMSC +* Source code: https://github.com/cran/Hmsc +* Date/Publication: 2022-08-11 14:10:14 UTC +* Number of recursive dependencies: 76 -Run `revdepcheck::cloud_details(, "ggrisk")` for more info +Run `revdepcheck::cloud_details(, "Hmsc")` for more info
## In both -* checking whether package ‘ggrisk’ can be installed ... ERROR +* checking whether package ‘Hmsc’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/ggrisk/new/ggrisk.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/00install.out’ for details. ``` ## Installation @@ -3312,137 +2849,123 @@ Run `revdepcheck::cloud_details(, "ggrisk")` for more info ### Devel ``` -* installing *source* package ‘ggrisk’ ... -** package ‘ggrisk’ successfully unpacked and MD5 sums checked +* installing *source* package ‘Hmsc’ ... +** package ‘Hmsc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘ggrisk’ -* removing ‘/tmp/workdir/ggrisk/new/ggrisk.Rcheck/ggrisk’ +ERROR: lazy loading failed for package ‘Hmsc’ +* removing ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/Hmsc’ ``` ### CRAN ``` -* installing *source* package ‘ggrisk’ ... -** package ‘ggrisk’ successfully unpacked and MD5 sums checked +* installing *source* package ‘Hmsc’ ... +** package ‘Hmsc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘ggrisk’ -* removing ‘/tmp/workdir/ggrisk/old/ggrisk.Rcheck/ggrisk’ +ERROR: lazy loading failed for package ‘Hmsc’ +* removing ‘/tmp/workdir/Hmsc/old/Hmsc.Rcheck/Hmsc’ ``` -# ggsector +# inventorize
-* Version: 1.6.6 -* GitHub: https://github.com/yanpd01/ggsector -* Source code: https://github.com/cran/ggsector -* Date/Publication: 2022-12-05 15:20:02 UTC -* Number of recursive dependencies: 159 +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/inventorize +* Date/Publication: 2022-05-31 22:20:09 UTC +* Number of recursive dependencies: 71 -Run `revdepcheck::cloud_details(, "ggsector")` for more info +Run `revdepcheck::cloud_details(, "inventorize")` for more info
-## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/ggsector/new/ggsector.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ggsector/DESCRIPTION’ ... OK -... -* this is package ‘ggsector’ version ‘1.6.6’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ +## Newly broken -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR +* checking whether package ‘inventorize’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘inventorize’ ... +** package ‘inventorize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in pm[[2]] : subscript out of bounds +Error: unable to load R code in package ‘inventorize’ +Execution halted +ERROR: lazy loading failed for package ‘inventorize’ +* removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/ggsector/old/ggsector.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ggsector/DESCRIPTION’ ... OK -... -* this is package ‘ggsector’ version ‘1.6.6’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +* installing *source* package ‘inventorize’ ... +** package ‘inventorize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Warning in qgamma(service_level, alpha, beta) : NaNs produced +Warning in qgamma(service_level, alpha, beta) : NaNs produced +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (inventorize) ``` -# gJLS2 +# iNZightPlots
-* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/gJLS2 -* Date/Publication: 2021-09-30 09:00:05 UTC -* Number of recursive dependencies: 45 +* Version: 2.15.3 +* GitHub: https://github.com/iNZightVIT/iNZightPlots +* Source code: https://github.com/cran/iNZightPlots +* Date/Publication: 2023-10-14 05:00:02 UTC +* Number of recursive dependencies: 162 -Run `revdepcheck::cloud_details(, "gJLS2")` for more info +Run `revdepcheck::cloud_details(, "iNZightPlots")` for more info
## In both -* checking whether package ‘gJLS2’ can be installed ... ERROR +* checking whether package ‘iNZightPlots’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/00install.out’ for details. ``` ## Installation @@ -3450,139 +2973,59 @@ Run `revdepcheck::cloud_details(, "gJLS2")` for more info ### Devel ``` -* installing *source* package ‘gJLS2’ ... -** package ‘gJLS2’ successfully unpacked and MD5 sums checked +* installing *source* package ‘iNZightPlots’ ... +** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘gJLS2’ -* removing ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/gJLS2’ +ERROR: lazy loading failed for package ‘iNZightPlots’ +* removing ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/iNZightPlots’ ``` ### CRAN ``` -* installing *source* package ‘gJLS2’ ... -** package ‘gJLS2’ successfully unpacked and MD5 sums checked +* installing *source* package ‘iNZightPlots’ ... +** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘gJLS2’ -* removing ‘/tmp/workdir/gJLS2/old/gJLS2.Rcheck/gJLS2’ - - -``` -# grandR - -
- -* Version: 0.2.5 -* GitHub: https://github.com/erhard-lab/grandR -* Source code: https://github.com/cran/grandR -* Date/Publication: 2024-02-15 15:30:02 UTC -* Number of recursive dependencies: 265 - -Run `revdepcheck::cloud_details(, "grandR")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘grandR/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘getting-started.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘grandR/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘getting-started.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - +ERROR: lazy loading failed for package ‘iNZightPlots’ +* removing ‘/tmp/workdir/iNZightPlots/old/iNZightPlots.Rcheck/iNZightPlots’ ``` -# Greg +# iNZightRegression
-* Version: 2.0.2 -* GitHub: https://github.com/gforge/Greg -* Source code: https://github.com/cran/Greg -* Date/Publication: 2024-01-29 13:30:21 UTC -* Number of recursive dependencies: 152 +* Version: 1.3.4 +* GitHub: https://github.com/iNZightVIT/iNZightRegression +* Source code: https://github.com/cran/iNZightRegression +* Date/Publication: 2024-04-05 02:32:59 UTC +* Number of recursive dependencies: 158 -Run `revdepcheck::cloud_details(, "Greg")` for more info +Run `revdepcheck::cloud_details(, "iNZightRegression")` for more info
## In both -* checking whether package ‘Greg’ can be installed ... ERROR +* checking whether package ‘iNZightRegression’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/Greg/new/Greg.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/00install.out’ for details. ``` ## Installation @@ -3590,8 +3033,8 @@ Run `revdepcheck::cloud_details(, "Greg")` for more info ### Devel ``` -* installing *source* package ‘Greg’ ... -** package ‘Greg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘iNZightRegression’ ... +** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst @@ -3600,16 +3043,16 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘Greg’ -* removing ‘/tmp/workdir/Greg/new/Greg.Rcheck/Greg’ +ERROR: lazy loading failed for package ‘iNZightRegression’ +* removing ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/iNZightRegression’ ``` ### CRAN ``` -* installing *source* package ‘Greg’ ... -** package ‘Greg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘iNZightRegression’ ... +** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst @@ -3618,31 +3061,31 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘Greg’ -* removing ‘/tmp/workdir/Greg/old/Greg.Rcheck/Greg’ +ERROR: lazy loading failed for package ‘iNZightRegression’ +* removing ‘/tmp/workdir/iNZightRegression/old/iNZightRegression.Rcheck/iNZightRegression’ ``` -# greport +# IRexamples
-* Version: 0.7-4 -* GitHub: https://github.com/harrelfe/greport -* Source code: https://github.com/cran/greport -* Date/Publication: 2023-09-02 22:20:02 UTC -* Number of recursive dependencies: 84 +* Version: 0.0.4 +* GitHub: https://github.com/vinhdizzo/IRexamples +* Source code: https://github.com/cran/IRexamples +* Date/Publication: 2023-10-06 06:40:02 UTC +* Number of recursive dependencies: 177 -Run `revdepcheck::cloud_details(, "greport")` for more info +Run `revdepcheck::cloud_details(, "IRexamples")` for more info
## In both -* checking whether package ‘greport’ can be installed ... ERROR +* checking whether package ‘IRexamples’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/greport/new/greport.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/00install.out’ for details. ``` ## Installation @@ -3650,135 +3093,73 @@ Run `revdepcheck::cloud_details(, "greport")` for more info ### Devel ``` -* installing *source* package ‘greport’ ... -** package ‘greport’ successfully unpacked and MD5 sums checked +* installing *source* package ‘IRexamples’ ... +** package ‘IRexamples’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘greport’ -* removing ‘/tmp/workdir/greport/new/greport.Rcheck/greport’ +ERROR: lazy loading failed for package ‘IRexamples’ +* removing ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/IRexamples’ ``` ### CRAN ``` -* installing *source* package ‘greport’ ... -** package ‘greport’ successfully unpacked and MD5 sums checked +* installing *source* package ‘IRexamples’ ... +** package ‘IRexamples’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘greport’ -* removing ‘/tmp/workdir/greport/old/greport.Rcheck/greport’ +ERROR: lazy loading failed for package ‘IRexamples’ +* removing ‘/tmp/workdir/IRexamples/old/IRexamples.Rcheck/IRexamples’ ``` -# harmony +# jmBIG
-* Version: 1.2.0 +* Version: 0.1.2 * GitHub: NA -* Source code: https://github.com/cran/harmony -* Date/Publication: 2023-11-29 08:30:04 UTC -* Number of recursive dependencies: 214 - -Run `revdepcheck::cloud_details(, "harmony")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/harmony/new/harmony.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘harmony/DESCRIPTION’ ... OK -... ---- finished re-building ‘quickstart.Rmd’ - -SUMMARY: processing the following file failed: - ‘Seurat.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 WARNING, 3 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/harmony/old/harmony.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘harmony/DESCRIPTION’ ... OK -... ---- finished re-building ‘quickstart.Rmd’ - -SUMMARY: processing the following file failed: - ‘Seurat.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 WARNING, 3 NOTEs - - - - - -``` -# hettx - -
- -* Version: 0.1.3 -* GitHub: https://github.com/bfifield/hettx -* Source code: https://github.com/cran/hettx -* Date/Publication: 2023-08-19 22:22:34 UTC -* Number of recursive dependencies: 85 +* Source code: https://github.com/cran/jmBIG +* Date/Publication: 2024-03-20 23:40:02 UTC +* Number of recursive dependencies: 184 -Run `revdepcheck::cloud_details(, "hettx")` for more info +Run `revdepcheck::cloud_details(, "jmBIG")` for more info
## In both -* checking whether package ‘hettx’ can be installed ... ERROR +* checking whether package ‘jmBIG’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/jmBIG/new/jmBIG.Rcheck/00install.out’ for details. ``` ## Installation @@ -3786,63 +3167,61 @@ Run `revdepcheck::cloud_details(, "hettx")` for more info ### Devel ``` -* installing *source* package ‘hettx’ ... -** package ‘hettx’ successfully unpacked and MD5 sums checked +* installing *source* package ‘jmBIG’ ... +** package ‘jmBIG’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘hettx’ -* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’ +ERROR: lazy loading failed for package ‘jmBIG’ +* removing ‘/tmp/workdir/jmBIG/new/jmBIG.Rcheck/jmBIG’ ``` ### CRAN ``` -* installing *source* package ‘hettx’ ... -** package ‘hettx’ successfully unpacked and MD5 sums checked +* installing *source* package ‘jmBIG’ ... +** package ‘jmBIG’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘hettx’ -* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’ +ERROR: lazy loading failed for package ‘jmBIG’ +* removing ‘/tmp/workdir/jmBIG/old/jmBIG.Rcheck/jmBIG’ ``` -# hIRT +# joineRML
-* Version: 0.3.0 -* GitHub: https://github.com/xiangzhou09/hIRT -* Source code: https://github.com/cran/hIRT -* Date/Publication: 2020-03-26 17:10:02 UTC -* Number of recursive dependencies: 88 +* Version: 0.4.6 +* GitHub: https://github.com/graemeleehickey/joineRML +* Source code: https://github.com/cran/joineRML +* Date/Publication: 2023-01-20 04:50:02 UTC +* Number of recursive dependencies: 91 -Run `revdepcheck::cloud_details(, "hIRT")` for more info +Run `revdepcheck::cloud_details(, "joineRML")` for more info
## In both -* checking whether package ‘hIRT’ can be installed ... ERROR +* checking whether package ‘joineRML’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/hIRT/new/hIRT.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/00install.out’ for details. ``` ## Installation @@ -3850,61 +3229,77 @@ Run `revdepcheck::cloud_details(, "hIRT")` for more info ### Devel ``` -* installing *source* package ‘hIRT’ ... -** package ‘hIRT’ successfully unpacked and MD5 sums checked +* installing *source* package ‘joineRML’ ... +** package ‘joineRML’ successfully unpacked and MD5 sums checked ** using staged installation -** R +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o +... ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘hIRT’ -* removing ‘/tmp/workdir/hIRT/new/hIRT.Rcheck/hIRT’ +ERROR: lazy loading failed for package ‘joineRML’ +* removing ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/joineRML’ ``` ### CRAN ``` -* installing *source* package ‘hIRT’ ... -** package ‘hIRT’ successfully unpacked and MD5 sums checked +* installing *source* package ‘joineRML’ ... +** package ‘joineRML’ successfully unpacked and MD5 sums checked ** using staged installation -** R +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o +... ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘hIRT’ -* removing ‘/tmp/workdir/hIRT/old/hIRT.Rcheck/hIRT’ +ERROR: lazy loading failed for package ‘joineRML’ +* removing ‘/tmp/workdir/joineRML/old/joineRML.Rcheck/joineRML’ ``` -# Hmsc +# JWileymisc
-* Version: 3.0-13 -* GitHub: https://github.com/hmsc-r/HMSC -* Source code: https://github.com/cran/Hmsc -* Date/Publication: 2022-08-11 14:10:14 UTC -* Number of recursive dependencies: 76 +* Version: 1.4.1 +* GitHub: https://github.com/JWiley/JWileymisc +* Source code: https://github.com/cran/JWileymisc +* Date/Publication: 2023-10-05 04:50:02 UTC +* Number of recursive dependencies: 167 -Run `revdepcheck::cloud_details(, "Hmsc")` for more info +Run `revdepcheck::cloud_details(, "JWileymisc")` for more info
## In both -* checking whether package ‘Hmsc’ can be installed ... ERROR +* checking whether package ‘JWileymisc’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/JWileymisc/new/JWileymisc.Rcheck/00install.out’ for details. ``` ## Installation @@ -3912,63 +3307,73 @@ Run `revdepcheck::cloud_details(, "Hmsc")` for more info ### Devel ``` -* installing *source* package ‘Hmsc’ ... -** package ‘Hmsc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘JWileymisc’ ... +** package ‘JWileymisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘Hmsc’ -* removing ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/Hmsc’ +ERROR: lazy loading failed for package ‘JWileymisc’ +* removing ‘/tmp/workdir/JWileymisc/new/JWileymisc.Rcheck/JWileymisc’ ``` ### CRAN ``` -* installing *source* package ‘Hmsc’ ... -** package ‘Hmsc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘JWileymisc’ ... +** package ‘JWileymisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘Hmsc’ -* removing ‘/tmp/workdir/Hmsc/old/Hmsc.Rcheck/Hmsc’ +ERROR: lazy loading failed for package ‘JWileymisc’ +* removing ‘/tmp/workdir/JWileymisc/old/JWileymisc.Rcheck/JWileymisc’ ``` -# iNZightPlots +# kmc
-* Version: 2.15.3 -* GitHub: https://github.com/iNZightVIT/iNZightPlots -* Source code: https://github.com/cran/iNZightPlots -* Date/Publication: 2023-10-14 05:00:02 UTC -* Number of recursive dependencies: 162 +* Version: 0.4-2 +* GitHub: https://github.com/yfyang86/kmc +* Source code: https://github.com/cran/kmc +* Date/Publication: 2022-11-22 08:30:02 UTC +* Number of recursive dependencies: 61 -Run `revdepcheck::cloud_details(, "iNZightPlots")` for more info +Run `revdepcheck::cloud_details(, "kmc")` for more info
## In both -* checking whether package ‘iNZightPlots’ can be installed ... ERROR +* checking whether package ‘kmc’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/kmc/new/kmc.Rcheck/00install.out’ for details. ``` ## Installation @@ -3976,59 +3381,73 @@ Run `revdepcheck::cloud_details(, "iNZightPlots")` for more info ### Devel ``` -* installing *source* package ‘iNZightPlots’ ... -** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked +* installing *source* package ‘kmc’ ... +** package ‘kmc’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/kmc/new/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs ** R -** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘iNZightPlots’ -* removing ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/iNZightPlots’ +ERROR: lazy loading failed for package ‘kmc’ +* removing ‘/tmp/workdir/kmc/new/kmc.Rcheck/kmc’ ``` ### CRAN ``` -* installing *source* package ‘iNZightPlots’ ... -** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked +* installing *source* package ‘kmc’ ... +** package ‘kmc’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/kmc/old/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘iNZightPlots’ -* removing ‘/tmp/workdir/iNZightPlots/old/iNZightPlots.Rcheck/iNZightPlots’ +ERROR: lazy loading failed for package ‘kmc’ +* removing ‘/tmp/workdir/kmc/old/kmc.Rcheck/kmc’ ``` -# iNZightRegression +# L2E
-* Version: 1.3.4 -* GitHub: https://github.com/iNZightVIT/iNZightRegression -* Source code: https://github.com/cran/iNZightRegression -* Date/Publication: 2024-04-05 02:32:59 UTC -* Number of recursive dependencies: 154 +* Version: 2.0 +* GitHub: NA +* Source code: https://github.com/cran/L2E +* Date/Publication: 2022-09-08 21:13:00 UTC +* Number of recursive dependencies: 65 -Run `revdepcheck::cloud_details(, "iNZightRegression")` for more info +Run `revdepcheck::cloud_details(, "L2E")` for more info
## In both -* checking whether package ‘iNZightRegression’ can be installed ... ERROR +* checking whether package ‘L2E’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/L2E/new/L2E.Rcheck/00install.out’ for details. ``` ## Installation @@ -4036,59 +3455,61 @@ Run `revdepcheck::cloud_details(, "iNZightRegression")` for more info ### Devel ``` -* installing *source* package ‘iNZightRegression’ ... -** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked +* installing *source* package ‘L2E’ ... +** package ‘L2E’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required Execution halted -ERROR: lazy loading failed for package ‘iNZightRegression’ -* removing ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/iNZightRegression’ +ERROR: lazy loading failed for package ‘L2E’ +* removing ‘/tmp/workdir/L2E/new/L2E.Rcheck/L2E’ ``` ### CRAN ``` -* installing *source* package ‘iNZightRegression’ ... -** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked +* installing *source* package ‘L2E’ ... +** package ‘L2E’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required Execution halted -ERROR: lazy loading failed for package ‘iNZightRegression’ -* removing ‘/tmp/workdir/iNZightRegression/old/iNZightRegression.Rcheck/iNZightRegression’ +ERROR: lazy loading failed for package ‘L2E’ +* removing ‘/tmp/workdir/L2E/old/L2E.Rcheck/L2E’ ``` -# IRexamples +# llbayesireg
-* Version: 0.0.4 -* GitHub: https://github.com/vinhdizzo/IRexamples -* Source code: https://github.com/cran/IRexamples -* Date/Publication: 2023-10-06 06:40:02 UTC -* Number of recursive dependencies: 185 +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/llbayesireg +* Date/Publication: 2019-04-04 16:20:03 UTC +* Number of recursive dependencies: 60 -Run `revdepcheck::cloud_details(, "IRexamples")` for more info +Run `revdepcheck::cloud_details(, "llbayesireg")` for more info
## In both -* checking whether package ‘IRexamples’ can be installed ... ERROR +* checking whether package ‘llbayesireg’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/llbayesireg/new/llbayesireg.Rcheck/00install.out’ for details. ``` ## Installation @@ -4096,63 +3517,61 @@ Run `revdepcheck::cloud_details(, "IRexamples")` for more info ### Devel ``` -* installing *source* package ‘IRexamples’ ... -** package ‘IRexamples’ successfully unpacked and MD5 sums checked +* installing *source* package ‘llbayesireg’ ... +** package ‘llbayesireg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘IRexamples’ -* removing ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/IRexamples’ +ERROR: lazy loading failed for package ‘llbayesireg’ +* removing ‘/tmp/workdir/llbayesireg/new/llbayesireg.Rcheck/llbayesireg’ ``` ### CRAN ``` -* installing *source* package ‘IRexamples’ ... -** package ‘IRexamples’ successfully unpacked and MD5 sums checked +* installing *source* package ‘llbayesireg’ ... +** package ‘llbayesireg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘IRexamples’ -* removing ‘/tmp/workdir/IRexamples/old/IRexamples.Rcheck/IRexamples’ +ERROR: lazy loading failed for package ‘llbayesireg’ +* removing ‘/tmp/workdir/llbayesireg/old/llbayesireg.Rcheck/llbayesireg’ ``` -# joineRML +# LorenzRegression
-* Version: 0.4.6 -* GitHub: https://github.com/graemeleehickey/joineRML -* Source code: https://github.com/cran/joineRML -* Date/Publication: 2023-01-20 04:50:02 UTC -* Number of recursive dependencies: 91 +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/LorenzRegression +* Date/Publication: 2023-02-28 17:32:34 UTC +* Number of recursive dependencies: 63 -Run `revdepcheck::cloud_details(, "joineRML")` for more info +Run `revdepcheck::cloud_details(, "LorenzRegression")` for more info
## In both -* checking whether package ‘joineRML’ can be installed ... ERROR +* checking whether package ‘LorenzRegression’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/00install.out’ for details. ``` ## Installation @@ -4160,16 +3579,16 @@ Run `revdepcheck::cloud_details(, "joineRML")` for more info ### Devel ``` -* installing *source* package ‘joineRML’ ... -** package ‘joineRML’ successfully unpacked and MD5 sums checked +* installing *source* package ‘LorenzRegression’ ... +** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o ... ** data *** moving datasets to lazyload DB @@ -4179,24 +3598,24 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘joineRML’ -* removing ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/joineRML’ +ERROR: lazy loading failed for package ‘LorenzRegression’ +* removing ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/LorenzRegression’ ``` ### CRAN ``` -* installing *source* package ‘joineRML’ ... -** package ‘joineRML’ successfully unpacked and MD5 sums checked +* installing *source* package ‘LorenzRegression’ ... +** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o ... ** data *** moving datasets to lazyload DB @@ -4206,31 +3625,31 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘joineRML’ -* removing ‘/tmp/workdir/joineRML/old/joineRML.Rcheck/joineRML’ +ERROR: lazy loading failed for package ‘LorenzRegression’ +* removing ‘/tmp/workdir/LorenzRegression/old/LorenzRegression.Rcheck/LorenzRegression’ ``` -# JWileymisc +# lsirm12pl
-* Version: 1.4.1 -* GitHub: https://github.com/JWiley/JWileymisc -* Source code: https://github.com/cran/JWileymisc -* Date/Publication: 2023-10-05 04:50:02 UTC -* Number of recursive dependencies: 164 +* Version: 1.3.1 +* GitHub: NA +* Source code: https://github.com/cran/lsirm12pl +* Date/Publication: 2023-06-22 14:12:35 UTC +* Number of recursive dependencies: 124 -Run `revdepcheck::cloud_details(, "JWileymisc")` for more info +Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info
## In both -* checking whether package ‘JWileymisc’ can be installed ... ERROR +* checking whether package ‘lsirm12pl’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/JWileymisc/new/JWileymisc.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details. ``` ## Installation @@ -4238,63 +3657,77 @@ Run `revdepcheck::cloud_details(, "JWileymisc")` for more info ### Devel ``` -* installing *source* package ‘JWileymisc’ ... -** package ‘JWileymisc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘lsirm12pl’ ... +** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c log_likelihood.cpp -o log_likelihood.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma.cpp -o lsirm1pl_fixed_gamma.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma_mar.cpp -o lsirm1pl_fixed_gamma_mar.o +... ** R ** data *** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘JWileymisc’ -* removing ‘/tmp/workdir/JWileymisc/new/JWileymisc.Rcheck/JWileymisc’ +ERROR: lazy loading failed for package ‘lsirm12pl’ +* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’ ``` ### CRAN ``` -* installing *source* package ‘JWileymisc’ ... -** package ‘JWileymisc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘lsirm12pl’ ... +** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c log_likelihood.cpp -o log_likelihood.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma.cpp -o lsirm1pl_fixed_gamma.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma_mar.cpp -o lsirm1pl_fixed_gamma_mar.o +... ** R ** data *** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘JWileymisc’ -* removing ‘/tmp/workdir/JWileymisc/old/JWileymisc.Rcheck/JWileymisc’ +ERROR: lazy loading failed for package ‘lsirm12pl’ +* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’ ``` -# kmc +# mbsts
-* Version: 0.4-2 -* GitHub: https://github.com/yfyang86/kmc -* Source code: https://github.com/cran/kmc -* Date/Publication: 2022-11-22 08:30:02 UTC -* Number of recursive dependencies: 61 +* Version: 3.0 +* GitHub: NA +* Source code: https://github.com/cran/mbsts +* Date/Publication: 2023-01-07 01:10:02 UTC +* Number of recursive dependencies: 82 -Run `revdepcheck::cloud_details(, "kmc")` for more info +Run `revdepcheck::cloud_details(, "mbsts")` for more info
## In both -* checking whether package ‘kmc’ can be installed ... ERROR +* checking whether package ‘mbsts’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/kmc/new/kmc.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/00install.out’ for details. ``` ## Installation @@ -4302,73 +3735,59 @@ Run `revdepcheck::cloud_details(, "kmc")` for more info ### Devel ``` -* installing *source* package ‘kmc’ ... -** package ‘kmc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘mbsts’ ... +** package ‘mbsts’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/kmc/new/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs ** R +** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘kmc’ -* removing ‘/tmp/workdir/kmc/new/kmc.Rcheck/kmc’ +ERROR: lazy loading failed for package ‘mbsts’ +* removing ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/mbsts’ ``` ### CRAN ``` -* installing *source* package ‘kmc’ ... -** package ‘kmc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘mbsts’ ... +** package ‘mbsts’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/kmc/old/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs ** R +** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘kmc’ -* removing ‘/tmp/workdir/kmc/old/kmc.Rcheck/kmc’ +ERROR: lazy loading failed for package ‘mbsts’ +* removing ‘/tmp/workdir/mbsts/old/mbsts.Rcheck/mbsts’ ``` -# L2E +# MendelianRandomization
-* Version: 2.0 +* Version: 0.10.0 * GitHub: NA -* Source code: https://github.com/cran/L2E -* Date/Publication: 2022-09-08 21:13:00 UTC -* Number of recursive dependencies: 65 +* Source code: https://github.com/cran/MendelianRandomization +* Date/Publication: 2024-04-12 10:10:02 UTC +* Number of recursive dependencies: 88 -Run `revdepcheck::cloud_details(, "L2E")` for more info +Run `revdepcheck::cloud_details(, "MendelianRandomization")` for more info
## In both -* checking whether package ‘L2E’ can be installed ... ERROR +* checking whether package ‘MendelianRandomization’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/L2E/new/L2E.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00install.out’ for details. ``` ## Installation @@ -4376,61 +3795,71 @@ Run `revdepcheck::cloud_details(, "L2E")` for more info ### Devel ``` -* installing *source* package ‘L2E’ ... -** package ‘L2E’ successfully unpacked and MD5 sums checked +* installing *source* package ‘MendelianRandomization’ ... +** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘L2E’ -* removing ‘/tmp/workdir/L2E/new/L2E.Rcheck/L2E’ +ERROR: lazy loading failed for package ‘MendelianRandomization’ +* removing ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/MendelianRandomization’ ``` ### CRAN ``` -* installing *source* package ‘L2E’ ... -** package ‘L2E’ successfully unpacked and MD5 sums checked +* installing *source* package ‘MendelianRandomization’ ... +** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘L2E’ -* removing ‘/tmp/workdir/L2E/old/L2E.Rcheck/L2E’ +ERROR: lazy loading failed for package ‘MendelianRandomization’ +* removing ‘/tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/MendelianRandomization’ ``` -# llbayesireg +# MetabolicSurv
-* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/llbayesireg -* Date/Publication: 2019-04-04 16:20:03 UTC -* Number of recursive dependencies: 61 +* Version: 1.1.2 +* GitHub: https://github.com/OlajumokeEvangelina/MetabolicSurv +* Source code: https://github.com/cran/MetabolicSurv +* Date/Publication: 2021-06-11 08:30:02 UTC +* Number of recursive dependencies: 131 -Run `revdepcheck::cloud_details(, "llbayesireg")` for more info +Run `revdepcheck::cloud_details(, "MetabolicSurv")` for more info
## In both -* checking whether package ‘llbayesireg’ can be installed ... ERROR +* checking whether package ‘MetabolicSurv’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/llbayesireg/new/llbayesireg.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/MetabolicSurv/new/MetabolicSurv.Rcheck/00install.out’ for details. ``` ## Installation @@ -4438,61 +3867,63 @@ Run `revdepcheck::cloud_details(, "llbayesireg")` for more info ### Devel ``` -* installing *source* package ‘llbayesireg’ ... -** package ‘llbayesireg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘MetabolicSurv’ ... +** package ‘MetabolicSurv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘llbayesireg’ -* removing ‘/tmp/workdir/llbayesireg/new/llbayesireg.Rcheck/llbayesireg’ +ERROR: lazy loading failed for package ‘MetabolicSurv’ +* removing ‘/tmp/workdir/MetabolicSurv/new/MetabolicSurv.Rcheck/MetabolicSurv’ ``` ### CRAN ``` -* installing *source* package ‘llbayesireg’ ... -** package ‘llbayesireg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘MetabolicSurv’ ... +** package ‘MetabolicSurv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘llbayesireg’ -* removing ‘/tmp/workdir/llbayesireg/old/llbayesireg.Rcheck/llbayesireg’ +ERROR: lazy loading failed for package ‘MetabolicSurv’ +* removing ‘/tmp/workdir/MetabolicSurv/old/MetabolicSurv.Rcheck/MetabolicSurv’ ``` -# LorenzRegression +# miWQS
-* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/LorenzRegression -* Date/Publication: 2023-02-28 17:32:34 UTC -* Number of recursive dependencies: 63 +* Version: 0.4.4 +* GitHub: https://github.com/phargarten2/miWQS +* Source code: https://github.com/cran/miWQS +* Date/Publication: 2021-04-02 21:50:02 UTC +* Number of recursive dependencies: 151 -Run `revdepcheck::cloud_details(, "LorenzRegression")` for more info +Run `revdepcheck::cloud_details(, "miWQS")` for more info
## In both -* checking whether package ‘LorenzRegression’ can be installed ... ERROR +* checking whether package ‘miWQS’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/00install.out’ for details. ``` ## Installation @@ -4500,17 +3931,10 @@ Run `revdepcheck::cloud_details(, "LorenzRegression")` for more info ### Devel ``` -* installing *source* package ‘LorenzRegression’ ... -** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked +* installing *source* package ‘miWQS’ ... +** package ‘miWQS’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -... +** R ** data *** moving datasets to lazyload DB ** inst @@ -4519,25 +3943,18 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘LorenzRegression’ -* removing ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/LorenzRegression’ +ERROR: lazy loading failed for package ‘miWQS’ +* removing ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/miWQS’ ``` ### CRAN ``` -* installing *source* package ‘LorenzRegression’ ... -** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked +* installing *source* package ‘miWQS’ ... +** package ‘miWQS’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -... +** R ** data *** moving datasets to lazyload DB ** inst @@ -4546,31 +3963,31 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘LorenzRegression’ -* removing ‘/tmp/workdir/LorenzRegression/old/LorenzRegression.Rcheck/LorenzRegression’ +ERROR: lazy loading failed for package ‘miWQS’ +* removing ‘/tmp/workdir/miWQS/old/miWQS.Rcheck/miWQS’ ``` -# lsirm12pl +# MRZero
-* Version: 1.3.1 +* Version: 0.2.0 * GitHub: NA -* Source code: https://github.com/cran/lsirm12pl -* Date/Publication: 2023-06-22 14:12:35 UTC -* Number of recursive dependencies: 123 +* Source code: https://github.com/cran/MRZero +* Date/Publication: 2024-04-14 09:30:03 UTC +* Number of recursive dependencies: 82 -Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info +Run `revdepcheck::cloud_details(, "MRZero")` for more info
## In both -* checking whether package ‘lsirm12pl’ can be installed ... ERROR +* checking whether package ‘MRZero’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/00install.out’ for details. ``` ## Installation @@ -4578,77 +3995,57 @@ Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info ### Devel ``` -* installing *source* package ‘lsirm12pl’ ... -** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked +* installing *source* package ‘MRZero’ ... +** package ‘MRZero’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c log_likelihood.cpp -o log_likelihood.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma.cpp -o lsirm1pl_fixed_gamma.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma_mar.cpp -o lsirm1pl_fixed_gamma_mar.o -... ** R -** data -*** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘lsirm12pl’ -* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’ +ERROR: lazy loading failed for package ‘MRZero’ +* removing ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/MRZero’ ``` ### CRAN ``` -* installing *source* package ‘lsirm12pl’ ... -** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked +* installing *source* package ‘MRZero’ ... +** package ‘MRZero’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c log_likelihood.cpp -o log_likelihood.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma.cpp -o lsirm1pl_fixed_gamma.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma_mar.cpp -o lsirm1pl_fixed_gamma_mar.o -... ** R -** data -*** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘lsirm12pl’ -* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’ +ERROR: lazy loading failed for package ‘MRZero’ +* removing ‘/tmp/workdir/MRZero/old/MRZero.Rcheck/MRZero’ ``` -# mbsts +# Multiaovbay
-* Version: 3.0 +* Version: 0.1.0 * GitHub: NA -* Source code: https://github.com/cran/mbsts -* Date/Publication: 2023-01-07 01:10:02 UTC -* Number of recursive dependencies: 82 +* Source code: https://github.com/cran/Multiaovbay +* Date/Publication: 2023-03-17 17:20:02 UTC +* Number of recursive dependencies: 153 -Run `revdepcheck::cloud_details(, "mbsts")` for more info +Run `revdepcheck::cloud_details(, "Multiaovbay")` for more info
## In both -* checking whether package ‘mbsts’ can be installed ... ERROR +* checking whether package ‘Multiaovbay’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/Multiaovbay/new/Multiaovbay.Rcheck/00install.out’ for details. ``` ## Installation @@ -4656,59 +4053,57 @@ Run `revdepcheck::cloud_details(, "mbsts")` for more info ### Devel ``` -* installing *source* package ‘mbsts’ ... -** package ‘mbsts’ successfully unpacked and MD5 sums checked +* installing *source* package ‘Multiaovbay’ ... +** package ‘Multiaovbay’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘mbsts’ -* removing ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/mbsts’ +ERROR: lazy loading failed for package ‘Multiaovbay’ +* removing ‘/tmp/workdir/Multiaovbay/new/Multiaovbay.Rcheck/Multiaovbay’ ``` ### CRAN ``` -* installing *source* package ‘mbsts’ ... -** package ‘mbsts’ successfully unpacked and MD5 sums checked +* installing *source* package ‘Multiaovbay’ ... +** package ‘Multiaovbay’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘mbsts’ -* removing ‘/tmp/workdir/mbsts/old/mbsts.Rcheck/mbsts’ +ERROR: lazy loading failed for package ‘Multiaovbay’ +* removing ‘/tmp/workdir/Multiaovbay/old/Multiaovbay.Rcheck/Multiaovbay’ ``` -# MendelianRandomization +# multilevelTools
-* Version: 0.10.0 -* GitHub: NA -* Source code: https://github.com/cran/MendelianRandomization -* Date/Publication: 2024-04-12 10:10:02 UTC -* Number of recursive dependencies: 88 - -Run `revdepcheck::cloud_details(, "MendelianRandomization")` for more info - +* Version: 0.1.1 +* GitHub: https://github.com/JWiley/multilevelTools +* Source code: https://github.com/cran/multilevelTools +* Date/Publication: 2020-03-04 09:50:02 UTC +* Number of recursive dependencies: 168 + +Run `revdepcheck::cloud_details(, "multilevelTools")` for more info +
## In both -* checking whether package ‘MendelianRandomization’ can be installed ... ERROR +* checking whether package ‘multilevelTools’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/00install.out’ for details. ``` ## Installation @@ -4716,71 +4111,69 @@ Run `revdepcheck::cloud_details(, "MendelianRandomization")` for more info ### Devel ``` -* installing *source* package ‘MendelianRandomization’ ... -** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked +* installing *source* package ‘multilevelTools’ ... +** package ‘multilevelTools’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs ** R ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘MendelianRandomization’ -* removing ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/MendelianRandomization’ +ERROR: lazy loading failed for package ‘multilevelTools’ +* removing ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/multilevelTools’ ``` ### CRAN ``` -* installing *source* package ‘MendelianRandomization’ ... -** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked +* installing *source* package ‘multilevelTools’ ... +** package ‘multilevelTools’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs ** R ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘MendelianRandomization’ -* removing ‘/tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/MendelianRandomization’ +ERROR: lazy loading failed for package ‘multilevelTools’ +* removing ‘/tmp/workdir/multilevelTools/old/multilevelTools.Rcheck/multilevelTools’ ``` -# MetabolicSurv +# multinma
-* Version: 1.1.2 -* GitHub: https://github.com/OlajumokeEvangelina/MetabolicSurv -* Source code: https://github.com/cran/MetabolicSurv -* Date/Publication: 2021-06-11 08:30:02 UTC -* Number of recursive dependencies: 142 +* Version: 0.7.1 +* GitHub: https://github.com/dmphillippo/multinma +* Source code: https://github.com/cran/multinma +* Date/Publication: 2024-06-11 12:20:06 UTC +* Number of recursive dependencies: 152 -Run `revdepcheck::cloud_details(, "MetabolicSurv")` for more info +Run `revdepcheck::cloud_details(, "multinma")` for more info
## In both -* checking whether package ‘MetabolicSurv’ can be installed ... ERROR +* checking whether package ‘multinma’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/MetabolicSurv/new/MetabolicSurv.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. ``` ## Installation @@ -4788,63 +4181,77 @@ Run `revdepcheck::cloud_details(, "MetabolicSurv")` for more info ### Devel ``` -* installing *source* package ‘MetabolicSurv’ ... -** package ‘MetabolicSurv’ successfully unpacked and MD5 sums checked +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MetabolicSurv’ -* removing ‘/tmp/workdir/MetabolicSurv/new/MetabolicSurv.Rcheck/MetabolicSurv’ +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_mspline_namespace::model_survival_mspline; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ ``` ### CRAN ``` -* installing *source* package ‘MetabolicSurv’ ... -** package ‘MetabolicSurv’ successfully unpacked and MD5 sums checked +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MetabolicSurv’ -* removing ‘/tmp/workdir/MetabolicSurv/old/MetabolicSurv.Rcheck/MetabolicSurv’ +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_mspline_namespace::model_survival_mspline; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ ``` -# miWQS +# NCA
-* Version: 0.4.4 -* GitHub: https://github.com/phargarten2/miWQS -* Source code: https://github.com/cran/miWQS -* Date/Publication: 2021-04-02 21:50:02 UTC -* Number of recursive dependencies: 152 +* Version: 4.0.1 +* GitHub: NA +* Source code: https://github.com/cran/NCA +* Date/Publication: 2024-02-23 09:30:15 UTC +* Number of recursive dependencies: 99 -Run `revdepcheck::cloud_details(, "miWQS")` for more info +Run `revdepcheck::cloud_details(, "NCA")` for more info
## In both -* checking whether package ‘miWQS’ can be installed ... ERROR +* checking whether package ‘NCA’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/NCA/new/NCA.Rcheck/00install.out’ for details. ``` ## Installation @@ -4852,63 +4259,59 @@ Run `revdepcheck::cloud_details(, "miWQS")` for more info ### Devel ``` -* installing *source* package ‘miWQS’ ... -** package ‘miWQS’ successfully unpacked and MD5 sums checked +* installing *source* package ‘NCA’ ... +** package ‘NCA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘miWQS’ -* removing ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/miWQS’ +ERROR: lazy loading failed for package ‘NCA’ +* removing ‘/tmp/workdir/NCA/new/NCA.Rcheck/NCA’ ``` ### CRAN ``` -* installing *source* package ‘miWQS’ ... -** package ‘miWQS’ successfully unpacked and MD5 sums checked +* installing *source* package ‘NCA’ ... +** package ‘NCA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘miWQS’ -* removing ‘/tmp/workdir/miWQS/old/miWQS.Rcheck/miWQS’ +ERROR: lazy loading failed for package ‘NCA’ +* removing ‘/tmp/workdir/NCA/old/NCA.Rcheck/NCA’ ``` -# mlmts +# netcmc
-* Version: 1.1.1 +* Version: 1.0.2 * GitHub: NA -* Source code: https://github.com/cran/mlmts -* Date/Publication: 2023-01-22 21:30:02 UTC -* Number of recursive dependencies: 241 +* Source code: https://github.com/cran/netcmc +* Date/Publication: 2022-11-08 22:30:15 UTC +* Number of recursive dependencies: 61 -Run `revdepcheck::cloud_details(, "mlmts")` for more info +Run `revdepcheck::cloud_details(, "netcmc")` for more info
## In both -* checking whether package ‘mlmts’ can be installed ... ERROR +* checking whether package ‘netcmc’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/00install.out’ for details. ``` ## Installation @@ -4916,63 +4319,77 @@ Run `revdepcheck::cloud_details(, "mlmts")` for more info ### Devel ``` -* installing *source* package ‘mlmts’ ... -** package ‘mlmts’ successfully unpacked and MD5 sums checked +* installing *source* package ‘netcmc’ ... +** package ‘netcmc’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o +... +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o +g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/netcmc/new/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading -Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): +Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Error: unable to load R code in package ‘mlmts’ Execution halted -ERROR: lazy loading failed for package ‘mlmts’ -* removing ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/mlmts’ +ERROR: lazy loading failed for package ‘netcmc’ +* removing ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/netcmc’ ``` ### CRAN ``` -* installing *source* package ‘mlmts’ ... -** package ‘mlmts’ successfully unpacked and MD5 sums checked +* installing *source* package ‘netcmc’ ... +** package ‘netcmc’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o +... +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o +g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/netcmc/old/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading -Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): +Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Error: unable to load R code in package ‘mlmts’ Execution halted -ERROR: lazy loading failed for package ‘mlmts’ -* removing ‘/tmp/workdir/mlmts/old/mlmts.Rcheck/mlmts’ +ERROR: lazy loading failed for package ‘netcmc’ +* removing ‘/tmp/workdir/netcmc/old/netcmc.Rcheck/netcmc’ ``` -# MRZero +# NetworkChange
-* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/MRZero -* Date/Publication: 2024-04-14 09:30:03 UTC -* Number of recursive dependencies: 82 +* Version: 0.8 +* GitHub: https://github.com/jongheepark/NetworkChange +* Source code: https://github.com/cran/NetworkChange +* Date/Publication: 2022-03-04 07:30:02 UTC +* Number of recursive dependencies: 132 -Run `revdepcheck::cloud_details(, "MRZero")` for more info +Run `revdepcheck::cloud_details(, "NetworkChange")` for more info
## In both -* checking whether package ‘MRZero’ can be installed ... ERROR +* checking whether package ‘NetworkChange’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/00install.out’ for details. ``` ## Installation @@ -4980,57 +4397,57 @@ Run `revdepcheck::cloud_details(, "MRZero")` for more info ### Devel ``` -* installing *source* package ‘MRZero’ ... -** package ‘MRZero’ successfully unpacked and MD5 sums checked +* installing *source* package ‘NetworkChange’ ... +** package ‘NetworkChange’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘MRZero’ -* removing ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/MRZero’ +ERROR: lazy loading failed for package ‘NetworkChange’ +* removing ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/NetworkChange’ ``` ### CRAN ``` -* installing *source* package ‘MRZero’ ... -** package ‘MRZero’ successfully unpacked and MD5 sums checked +* installing *source* package ‘NetworkChange’ ... +** package ‘NetworkChange’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘MRZero’ -* removing ‘/tmp/workdir/MRZero/old/MRZero.Rcheck/MRZero’ +ERROR: lazy loading failed for package ‘NetworkChange’ +* removing ‘/tmp/workdir/NetworkChange/old/NetworkChange.Rcheck/NetworkChange’ ``` -# Multiaovbay +# nlmeVPC
-* Version: 0.1.0 +* Version: 2.6 * GitHub: NA -* Source code: https://github.com/cran/Multiaovbay -* Date/Publication: 2023-03-17 17:20:02 UTC -* Number of recursive dependencies: 161 +* Source code: https://github.com/cran/nlmeVPC +* Date/Publication: 2022-12-22 05:20:02 UTC +* Number of recursive dependencies: 77 -Run `revdepcheck::cloud_details(, "Multiaovbay")` for more info +Run `revdepcheck::cloud_details(, "nlmeVPC")` for more info
## In both -* checking whether package ‘Multiaovbay’ can be installed ... ERROR +* checking whether package ‘nlmeVPC’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/Multiaovbay/new/Multiaovbay.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/00install.out’ for details. ``` ## Installation @@ -5038,57 +4455,73 @@ Run `revdepcheck::cloud_details(, "Multiaovbay")` for more info ### Devel ``` -* installing *source* package ‘Multiaovbay’ ... -** package ‘Multiaovbay’ successfully unpacked and MD5 sums checked +* installing *source* package ‘nlmeVPC’ ... +** package ‘nlmeVPC’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Misc.cpp -o Misc.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nlmeVPC.so Misc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/00LOCK-nlmeVPC/00new/nlmeVPC/libs ** R +** data ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘Multiaovbay’ -* removing ‘/tmp/workdir/Multiaovbay/new/Multiaovbay.Rcheck/Multiaovbay’ +ERROR: lazy loading failed for package ‘nlmeVPC’ +* removing ‘/tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/nlmeVPC’ ``` ### CRAN ``` -* installing *source* package ‘Multiaovbay’ ... -** package ‘Multiaovbay’ successfully unpacked and MD5 sums checked +* installing *source* package ‘nlmeVPC’ ... +** package ‘nlmeVPC’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Misc.cpp -o Misc.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nlmeVPC.so Misc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/nlmeVPC/old/nlmeVPC.Rcheck/00LOCK-nlmeVPC/00new/nlmeVPC/libs ** R +** data ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘Multiaovbay’ -* removing ‘/tmp/workdir/Multiaovbay/old/Multiaovbay.Rcheck/Multiaovbay’ +ERROR: lazy loading failed for package ‘nlmeVPC’ +* removing ‘/tmp/workdir/nlmeVPC/old/nlmeVPC.Rcheck/nlmeVPC’ ``` -# multilevelTools +# NMADiagT
-* Version: 0.1.1 -* GitHub: https://github.com/JWiley/multilevelTools -* Source code: https://github.com/cran/multilevelTools -* Date/Publication: 2020-03-04 09:50:02 UTC -* Number of recursive dependencies: 164 +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/NMADiagT +* Date/Publication: 2020-02-26 07:00:02 UTC +* Number of recursive dependencies: 79 -Run `revdepcheck::cloud_details(, "multilevelTools")` for more info +Run `revdepcheck::cloud_details(, "NMADiagT")` for more info
## In both -* checking whether package ‘multilevelTools’ can be installed ... ERROR +* checking whether package ‘NMADiagT’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/00install.out’ for details. ``` ## Installation @@ -5096,8 +4529,8 @@ Run `revdepcheck::cloud_details(, "multilevelTools")` for more info ### Devel ``` -* installing *source* package ‘multilevelTools’ ... -** package ‘multilevelTools’ successfully unpacked and MD5 sums checked +* installing *source* package ‘NMADiagT’ ... +** package ‘NMADiagT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst @@ -5106,16 +4539,16 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘multilevelTools’ -* removing ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/multilevelTools’ +ERROR: lazy loading failed for package ‘NMADiagT’ +* removing ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/NMADiagT’ ``` ### CRAN ``` -* installing *source* package ‘multilevelTools’ ... -** package ‘multilevelTools’ successfully unpacked and MD5 sums checked +* installing *source* package ‘NMADiagT’ ... +** package ‘NMADiagT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst @@ -5124,31 +4557,31 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘multilevelTools’ -* removing ‘/tmp/workdir/multilevelTools/old/multilevelTools.Rcheck/multilevelTools’ +ERROR: lazy loading failed for package ‘NMADiagT’ +* removing ‘/tmp/workdir/NMADiagT/old/NMADiagT.Rcheck/NMADiagT’ ``` -# multinma +# optweight
-* Version: 0.7.0 -* GitHub: https://github.com/dmphillippo/multinma -* Source code: https://github.com/cran/multinma -* Date/Publication: 2024-05-07 15:40:02 UTC -* Number of recursive dependencies: 152 +* Version: 0.2.5 +* GitHub: NA +* Source code: https://github.com/cran/optweight +* Date/Publication: 2019-09-16 15:40:02 UTC +* Number of recursive dependencies: 55 -Run `revdepcheck::cloud_details(, "multinma")` for more info +Run `revdepcheck::cloud_details(, "optweight")` for more info
## In both -* checking whether package ‘multinma’ can be installed ... ERROR +* checking whether package ‘optweight’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/optweight/new/optweight.Rcheck/00install.out’ for details. ``` ## Installation @@ -5156,77 +4589,57 @@ Run `revdepcheck::cloud_details(, "multinma")` for more info ### Devel ``` -* installing *source* package ‘multinma’ ... -** package ‘multinma’ successfully unpacked and MD5 sums checked +* installing *source* package ‘optweight’ ... +** package ‘optweight’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_mspline_namespace::model_survival_mspline; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 -ERROR: compilation failed for package ‘multinma’ -* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘optweight’ +* removing ‘/tmp/workdir/optweight/new/optweight.Rcheck/optweight’ ``` ### CRAN ``` -* installing *source* package ‘multinma’ ... -** package ‘multinma’ successfully unpacked and MD5 sums checked +* installing *source* package ‘optweight’ ... +** package ‘optweight’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_mspline_namespace::model_survival_mspline; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 -ERROR: compilation failed for package ‘multinma’ -* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘optweight’ +* removing ‘/tmp/workdir/optweight/old/optweight.Rcheck/optweight’ ``` -# NCA +# OVtool
-* Version: 4.0.1 +* Version: 1.0.3 * GitHub: NA -* Source code: https://github.com/cran/NCA -* Date/Publication: 2024-02-23 09:30:15 UTC -* Number of recursive dependencies: 99 +* Source code: https://github.com/cran/OVtool +* Date/Publication: 2021-11-02 08:10:07 UTC +* Number of recursive dependencies: 157 -Run `revdepcheck::cloud_details(, "NCA")` for more info +Run `revdepcheck::cloud_details(, "OVtool")` for more info
## In both -* checking whether package ‘NCA’ can be installed ... ERROR +* checking whether package ‘OVtool’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/NCA/new/NCA.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details. ``` ## Installation @@ -5234,59 +4647,61 @@ Run `revdepcheck::cloud_details(, "NCA")` for more info ### Devel ``` -* installing *source* package ‘NCA’ ... -** package ‘NCA’ successfully unpacked and MD5 sums checked +* installing *source* package ‘OVtool’ ... +** package ‘OVtool’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘NCA’ -* removing ‘/tmp/workdir/NCA/new/NCA.Rcheck/NCA’ +ERROR: lazy loading failed for package ‘OVtool’ +* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’ ``` ### CRAN ``` -* installing *source* package ‘NCA’ ... -** package ‘NCA’ successfully unpacked and MD5 sums checked +* installing *source* package ‘OVtool’ ... +** package ‘OVtool’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘NCA’ -* removing ‘/tmp/workdir/NCA/old/NCA.Rcheck/NCA’ +ERROR: lazy loading failed for package ‘OVtool’ +* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’ ``` -# netcmc +# paths
-* Version: 1.0.2 +* Version: 0.1.1 * GitHub: NA -* Source code: https://github.com/cran/netcmc -* Date/Publication: 2022-11-08 22:30:15 UTC -* Number of recursive dependencies: 61 +* Source code: https://github.com/cran/paths +* Date/Publication: 2021-06-18 08:40:02 UTC +* Number of recursive dependencies: 102 -Run `revdepcheck::cloud_details(, "netcmc")` for more info +Run `revdepcheck::cloud_details(, "paths")` for more info
## In both -* checking whether package ‘netcmc’ can be installed ... ERROR +* checking whether package ‘paths’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/paths/new/paths.Rcheck/00install.out’ for details. ``` ## Installation @@ -5294,77 +4709,63 @@ Run `revdepcheck::cloud_details(, "netcmc")` for more info ### Devel ``` -* installing *source* package ‘netcmc’ ... -** package ‘netcmc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘paths’ ... +** package ‘paths’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o -... -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/netcmc/new/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs ** R +** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘netcmc’ -* removing ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/netcmc’ +ERROR: lazy loading failed for package ‘paths’ +* removing ‘/tmp/workdir/paths/new/paths.Rcheck/paths’ ``` ### CRAN ``` -* installing *source* package ‘netcmc’ ... -** package ‘netcmc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘paths’ ... +** package ‘paths’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o -... -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/netcmc/old/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs ** R +** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘netcmc’ -* removing ‘/tmp/workdir/netcmc/old/netcmc.Rcheck/netcmc’ +ERROR: lazy loading failed for package ‘paths’ +* removing ‘/tmp/workdir/paths/old/paths.Rcheck/paths’ ``` -# NetworkChange +# PLMIX
-* Version: 0.8 -* GitHub: https://github.com/jongheepark/NetworkChange -* Source code: https://github.com/cran/NetworkChange -* Date/Publication: 2022-03-04 07:30:02 UTC -* Number of recursive dependencies: 132 +* Version: 2.1.1 +* GitHub: NA +* Source code: https://github.com/cran/PLMIX +* Date/Publication: 2019-09-04 11:50:02 UTC +* Number of recursive dependencies: 138 -Run `revdepcheck::cloud_details(, "NetworkChange")` for more info +Run `revdepcheck::cloud_details(, "PLMIX")` for more info
## In both -* checking whether package ‘NetworkChange’ can be installed ... ERROR +* checking whether package ‘PLMIX’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/PLMIX/new/PLMIX.Rcheck/00install.out’ for details. ``` ## Installation @@ -5372,57 +4773,77 @@ Run `revdepcheck::cloud_details(, "NetworkChange")` for more info ### Devel ``` -* installing *source* package ‘NetworkChange’ ... -** package ‘NetworkChange’ successfully unpacked and MD5 sums checked +* installing *source* package ‘PLMIX’ ... +** package ‘PLMIX’ successfully unpacked and MD5 sums checked ** using staged installation -** R +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompProbZpartial.cpp -o CompProbZpartial.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateP.cpp -o CompRateP.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateYpartial.cpp -o CompRateYpartial.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Estep.cpp -o Estep.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c PLMIXsim.cpp -o PLMIXsim.o +... ** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘NetworkChange’ -* removing ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/NetworkChange’ +ERROR: lazy loading failed for package ‘PLMIX’ +* removing ‘/tmp/workdir/PLMIX/new/PLMIX.Rcheck/PLMIX’ ``` ### CRAN ``` -* installing *source* package ‘NetworkChange’ ... -** package ‘NetworkChange’ successfully unpacked and MD5 sums checked +* installing *source* package ‘PLMIX’ ... +** package ‘PLMIX’ successfully unpacked and MD5 sums checked ** using staged installation -** R +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompProbZpartial.cpp -o CompProbZpartial.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateP.cpp -o CompRateP.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateYpartial.cpp -o CompRateYpartial.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Estep.cpp -o Estep.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c PLMIXsim.cpp -o PLMIXsim.o +... ** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘NetworkChange’ -* removing ‘/tmp/workdir/NetworkChange/old/NetworkChange.Rcheck/NetworkChange’ +ERROR: lazy loading failed for package ‘PLMIX’ +* removing ‘/tmp/workdir/PLMIX/old/PLMIX.Rcheck/PLMIX’ ``` -# nlmeVPC +# popstudy
-* Version: 2.6 +* Version: 1.0.1 * GitHub: NA -* Source code: https://github.com/cran/nlmeVPC -* Date/Publication: 2022-12-22 05:20:02 UTC -* Number of recursive dependencies: 91 +* Source code: https://github.com/cran/popstudy +* Date/Publication: 2023-10-17 23:50:02 UTC +* Number of recursive dependencies: 240 -Run `revdepcheck::cloud_details(, "nlmeVPC")` for more info +Run `revdepcheck::cloud_details(, "popstudy")` for more info
## In both -* checking whether package ‘nlmeVPC’ can be installed ... ERROR +* checking whether package ‘popstudy’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/00install.out’ for details. ``` ## Installation @@ -5430,73 +4851,63 @@ Run `revdepcheck::cloud_details(, "nlmeVPC")` for more info ### Devel ``` -* installing *source* package ‘nlmeVPC’ ... -** package ‘nlmeVPC’ successfully unpacked and MD5 sums checked +* installing *source* package ‘popstudy’ ... +** package ‘popstudy’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Misc.cpp -o Misc.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nlmeVPC.so Misc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/00LOCK-nlmeVPC/00new/nlmeVPC/libs ** R ** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘nlmeVPC’ -* removing ‘/tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/nlmeVPC’ +ERROR: lazy loading failed for package ‘popstudy’ +* removing ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/popstudy’ ``` ### CRAN ``` -* installing *source* package ‘nlmeVPC’ ... -** package ‘nlmeVPC’ successfully unpacked and MD5 sums checked +* installing *source* package ‘popstudy’ ... +** package ‘popstudy’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Misc.cpp -o Misc.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nlmeVPC.so Misc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/nlmeVPC/old/nlmeVPC.Rcheck/00LOCK-nlmeVPC/00new/nlmeVPC/libs ** R ** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘nlmeVPC’ -* removing ‘/tmp/workdir/nlmeVPC/old/nlmeVPC.Rcheck/nlmeVPC’ +ERROR: lazy loading failed for package ‘popstudy’ +* removing ‘/tmp/workdir/popstudy/old/popstudy.Rcheck/popstudy’ ``` -# NMADiagT +# pould
-* Version: 0.1.2 +* Version: 1.0.1 * GitHub: NA -* Source code: https://github.com/cran/NMADiagT -* Date/Publication: 2020-02-26 07:00:02 UTC -* Number of recursive dependencies: 79 +* Source code: https://github.com/cran/pould +* Date/Publication: 2020-10-16 13:50:03 UTC +* Number of recursive dependencies: 104 -Run `revdepcheck::cloud_details(, "NMADiagT")` for more info +Run `revdepcheck::cloud_details(, "pould")` for more info
## In both -* checking whether package ‘NMADiagT’ can be installed ... ERROR +* checking whether package ‘pould’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/pould/new/pould.Rcheck/00install.out’ for details. ``` ## Installation @@ -5504,59 +4915,63 @@ Run `revdepcheck::cloud_details(, "NMADiagT")` for more info ### Devel ``` -* installing *source* package ‘NMADiagT’ ... -** package ‘NMADiagT’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pould’ ... +** package ‘pould’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘NMADiagT’ -* removing ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/NMADiagT’ +ERROR: lazy loading failed for package ‘pould’ +* removing ‘/tmp/workdir/pould/new/pould.Rcheck/pould’ ``` ### CRAN ``` -* installing *source* package ‘NMADiagT’ ... -** package ‘NMADiagT’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pould’ ... +** package ‘pould’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘NMADiagT’ -* removing ‘/tmp/workdir/NMADiagT/old/NMADiagT.Rcheck/NMADiagT’ +ERROR: lazy loading failed for package ‘pould’ +* removing ‘/tmp/workdir/pould/old/pould.Rcheck/pould’ ``` -# optweight +# powerly
-* Version: 0.2.5 -* GitHub: NA -* Source code: https://github.com/cran/optweight -* Date/Publication: 2019-09-16 15:40:02 UTC -* Number of recursive dependencies: 55 +* Version: 1.8.6 +* GitHub: https://github.com/mihaiconstantin/powerly +* Source code: https://github.com/cran/powerly +* Date/Publication: 2022-09-09 14:10:01 UTC +* Number of recursive dependencies: 181 -Run `revdepcheck::cloud_details(, "optweight")` for more info +Run `revdepcheck::cloud_details(, "powerly")` for more info
## In both -* checking whether package ‘optweight’ can be installed ... ERROR +* checking whether package ‘powerly’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/optweight/new/optweight.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/powerly/new/powerly.Rcheck/00install.out’ for details. ``` ## Installation @@ -5564,57 +4979,69 @@ Run `revdepcheck::cloud_details(, "optweight")` for more info ### Devel ``` -* installing *source* package ‘optweight’ ... -** package ‘optweight’ successfully unpacked and MD5 sums checked +* installing *source* package ‘powerly’ ... +** package ‘powerly’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘optweight’ -* removing ‘/tmp/workdir/optweight/new/optweight.Rcheck/optweight’ +ERROR: lazy loading failed for package ‘powerly’ +* removing ‘/tmp/workdir/powerly/new/powerly.Rcheck/powerly’ ``` ### CRAN ``` -* installing *source* package ‘optweight’ ... -** package ‘optweight’ successfully unpacked and MD5 sums checked +* installing *source* package ‘powerly’ ... +** package ‘powerly’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘optweight’ -* removing ‘/tmp/workdir/optweight/old/optweight.Rcheck/optweight’ +ERROR: lazy loading failed for package ‘powerly’ +* removing ‘/tmp/workdir/powerly/old/powerly.Rcheck/powerly’ ``` -# OVtool +# pre
-* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/OVtool -* Date/Publication: 2021-11-02 08:10:07 UTC -* Number of recursive dependencies: 158 +* Version: 1.0.7 +* GitHub: https://github.com/marjoleinF/pre +* Source code: https://github.com/cran/pre +* Date/Publication: 2024-01-12 19:30:02 UTC +* Number of recursive dependencies: 151 -Run `revdepcheck::cloud_details(, "OVtool")` for more info +Run `revdepcheck::cloud_details(, "pre")` for more info
## In both -* checking whether package ‘OVtool’ can be installed ... ERROR +* checking whether package ‘pre’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/pre/new/pre.Rcheck/00install.out’ for details. ``` ## Installation @@ -5622,125 +5049,139 @@ Run `revdepcheck::cloud_details(, "OVtool")` for more info ### Devel ``` -* installing *source* package ‘OVtool’ ... -** package ‘OVtool’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pre’ ... +** package ‘pre’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘OVtool’ -* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’ +ERROR: lazy loading failed for package ‘pre’ +* removing ‘/tmp/workdir/pre/new/pre.Rcheck/pre’ ``` ### CRAN ``` -* installing *source* package ‘OVtool’ ... -** package ‘OVtool’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pre’ ... +** package ‘pre’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘OVtool’ -* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’ +ERROR: lazy loading failed for package ‘pre’ +* removing ‘/tmp/workdir/pre/old/pre.Rcheck/pre’ ``` -# paths +# ProFAST
-* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/paths -* Date/Publication: 2021-06-18 08:40:02 UTC -* Number of recursive dependencies: 103 +* Version: 1.4 +* GitHub: https://github.com/feiyoung/ProFAST +* Source code: https://github.com/cran/ProFAST +* Date/Publication: 2024-03-18 08:10:06 UTC +* Number of recursive dependencies: 245 -Run `revdepcheck::cloud_details(, "paths")` for more info +Run `revdepcheck::cloud_details(, "ProFAST")` for more info
-## In both - -* checking whether package ‘paths’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/paths/new/paths.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘paths’ ... -** package ‘paths’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘paths’ -* removing ‘/tmp/workdir/paths/new/paths.Rcheck/paths’ +* using log directory ‘/tmp/workdir/ProFAST/new/ProFAST.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ProFAST/DESCRIPTION’ ... OK +... +* this is package ‘ProFAST’ version ‘1.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'DR.SC', 'PRECAST' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘paths’ ... -** package ‘paths’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘paths’ -* removing ‘/tmp/workdir/paths/old/paths.Rcheck/paths’ +* using log directory ‘/tmp/workdir/ProFAST/old/ProFAST.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ProFAST/DESCRIPTION’ ... OK +... +* this is package ‘ProFAST’ version ‘1.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'DR.SC', 'PRECAST' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` -# PLMIX +# psbcSpeedUp
-* Version: 2.1.1 -* GitHub: NA -* Source code: https://github.com/cran/PLMIX -* Date/Publication: 2019-09-04 11:50:02 UTC -* Number of recursive dependencies: 151 +* Version: 2.0.7 +* GitHub: https://github.com/ocbe-uio/psbcSpeedUp +* Source code: https://github.com/cran/psbcSpeedUp +* Date/Publication: 2024-07-01 09:00:02 UTC +* Number of recursive dependencies: 129 -Run `revdepcheck::cloud_details(, "PLMIX")` for more info +Run `revdepcheck::cloud_details(, "psbcSpeedUp")` for more info
## In both -* checking whether package ‘PLMIX’ can be installed ... ERROR +* checking whether package ‘psbcSpeedUp’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/PLMIX/new/PLMIX.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/psbcSpeedUp/new/psbcSpeedUp.Rcheck/00install.out’ for details. ``` ## Installation @@ -5748,16 +5189,16 @@ Run `revdepcheck::cloud_details(, "PLMIX")` for more info ### Devel ``` -* installing *source* package ‘PLMIX’ ... -** package ‘PLMIX’ successfully unpacked and MD5 sums checked +* installing *source* package ‘psbcSpeedUp’ ... +** package ‘psbcSpeedUp’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompProbZpartial.cpp -o CompProbZpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateP.cpp -o CompRateP.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateYpartial.cpp -o CompRateYpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Estep.cpp -o Estep.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c PLMIXsim.cpp -o PLMIXsim.o +checking whether the C++ compiler works... yes +checking for C++ compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether the compiler supports GNU C++... yes +checking whether g++ -std=gnu++17 accepts -g... yes ... ** data *** moving datasets to lazyload DB @@ -5767,24 +5208,24 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘PLMIX’ -* removing ‘/tmp/workdir/PLMIX/new/PLMIX.Rcheck/PLMIX’ +ERROR: lazy loading failed for package ‘psbcSpeedUp’ +* removing ‘/tmp/workdir/psbcSpeedUp/new/psbcSpeedUp.Rcheck/psbcSpeedUp’ ``` ### CRAN ``` -* installing *source* package ‘PLMIX’ ... -** package ‘PLMIX’ successfully unpacked and MD5 sums checked +* installing *source* package ‘psbcSpeedUp’ ... +** package ‘psbcSpeedUp’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompProbZpartial.cpp -o CompProbZpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateP.cpp -o CompRateP.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateYpartial.cpp -o CompRateYpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Estep.cpp -o Estep.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c PLMIXsim.cpp -o PLMIXsim.o +checking whether the C++ compiler works... yes +checking for C++ compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether the compiler supports GNU C++... yes +checking whether g++ -std=gnu++17 accepts -g... yes ... ** data *** moving datasets to lazyload DB @@ -5794,31 +5235,31 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘PLMIX’ -* removing ‘/tmp/workdir/PLMIX/old/PLMIX.Rcheck/PLMIX’ +ERROR: lazy loading failed for package ‘psbcSpeedUp’ +* removing ‘/tmp/workdir/psbcSpeedUp/old/psbcSpeedUp.Rcheck/psbcSpeedUp’ ``` -# popstudy +# pscore
-* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/popstudy -* Date/Publication: 2023-10-17 23:50:02 UTC -* Number of recursive dependencies: 236 +* Version: 0.4.0 +* GitHub: https://github.com/JWiley/score-project +* Source code: https://github.com/cran/pscore +* Date/Publication: 2022-05-13 22:30:02 UTC +* Number of recursive dependencies: 169 -Run `revdepcheck::cloud_details(, "popstudy")` for more info +Run `revdepcheck::cloud_details(, "pscore")` for more info
## In both -* checking whether package ‘popstudy’ can be installed ... ERROR +* checking whether package ‘pscore’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. ``` ## Installation @@ -5826,63 +5267,71 @@ Run `revdepcheck::cloud_details(, "popstudy")` for more info ### Devel ``` -* installing *source* package ‘popstudy’ ... -** package ‘popstudy’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pscore’ ... +** package ‘pscore’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘popstudy’ -* removing ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/popstudy’ +ERROR: lazy loading failed for package ‘pscore’ +* removing ‘/tmp/workdir/pscore/new/pscore.Rcheck/pscore’ ``` ### CRAN ``` -* installing *source* package ‘popstudy’ ... -** package ‘popstudy’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pscore’ ... +** package ‘pscore’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘popstudy’ -* removing ‘/tmp/workdir/popstudy/old/popstudy.Rcheck/popstudy’ +ERROR: lazy loading failed for package ‘pscore’ +* removing ‘/tmp/workdir/pscore/old/pscore.Rcheck/pscore’ ``` -# pould +# psfmi
-* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/pould -* Date/Publication: 2020-10-16 13:50:03 UTC -* Number of recursive dependencies: 104 +* Version: 1.4.0 +* GitHub: https://github.com/mwheymans/psfmi +* Source code: https://github.com/cran/psfmi +* Date/Publication: 2023-06-17 22:40:02 UTC +* Number of recursive dependencies: 164 -Run `revdepcheck::cloud_details(, "pould")` for more info +Run `revdepcheck::cloud_details(, "psfmi")` for more info
## In both -* checking whether package ‘pould’ can be installed ... ERROR +* checking whether package ‘psfmi’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/pould/new/pould.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/psfmi/new/psfmi.Rcheck/00install.out’ for details. ``` ## Installation @@ -5890,8 +5339,8 @@ Run `revdepcheck::cloud_details(, "pould")` for more info ### Devel ``` -* installing *source* package ‘pould’ ... -** package ‘pould’ successfully unpacked and MD5 sums checked +* installing *source* package ‘psfmi’ ... +** package ‘psfmi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data @@ -5902,16 +5351,16 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘pould’ -* removing ‘/tmp/workdir/pould/new/pould.Rcheck/pould’ +ERROR: lazy loading failed for package ‘psfmi’ +* removing ‘/tmp/workdir/psfmi/new/psfmi.Rcheck/psfmi’ ``` ### CRAN ``` -* installing *source* package ‘pould’ ... -** package ‘pould’ successfully unpacked and MD5 sums checked +* installing *source* package ‘psfmi’ ... +** package ‘psfmi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data @@ -5922,31 +5371,31 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘pould’ -* removing ‘/tmp/workdir/pould/old/pould.Rcheck/pould’ +ERROR: lazy loading failed for package ‘psfmi’ +* removing ‘/tmp/workdir/psfmi/old/psfmi.Rcheck/psfmi’ ``` -# powerly +# qPCRtools
-* Version: 1.8.6 -* GitHub: https://github.com/mihaiconstantin/powerly -* Source code: https://github.com/cran/powerly -* Date/Publication: 2022-09-09 14:10:01 UTC -* Number of recursive dependencies: 176 +* Version: 1.0.1 +* GitHub: https://github.com/lixiang117423/qPCRtools +* Source code: https://github.com/cran/qPCRtools +* Date/Publication: 2023-11-02 13:10:05 UTC +* Number of recursive dependencies: 106 -Run `revdepcheck::cloud_details(, "powerly")` for more info +Run `revdepcheck::cloud_details(, "qPCRtools")` for more info
## In both -* checking whether package ‘powerly’ can be installed ... ERROR +* checking whether package ‘qPCRtools’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/powerly/new/powerly.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/qPCRtools/new/qPCRtools.Rcheck/00install.out’ for details. ``` ## Installation @@ -5954,59 +5403,59 @@ Run `revdepcheck::cloud_details(, "powerly")` for more info ### Devel ``` -* installing *source* package ‘powerly’ ... -** package ‘powerly’ successfully unpacked and MD5 sums checked +* installing *source* package ‘qPCRtools’ ... +** package ‘qPCRtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘powerly’ -* removing ‘/tmp/workdir/powerly/new/powerly.Rcheck/powerly’ +ERROR: lazy loading failed for package ‘qPCRtools’ +* removing ‘/tmp/workdir/qPCRtools/new/qPCRtools.Rcheck/qPCRtools’ ``` ### CRAN ``` -* installing *source* package ‘powerly’ ... -** package ‘powerly’ successfully unpacked and MD5 sums checked +* installing *source* package ‘qPCRtools’ ... +** package ‘qPCRtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘powerly’ -* removing ‘/tmp/workdir/powerly/old/powerly.Rcheck/powerly’ +ERROR: lazy loading failed for package ‘qPCRtools’ +* removing ‘/tmp/workdir/qPCRtools/old/qPCRtools.Rcheck/qPCRtools’ ``` -# pre +# qreport
-* Version: 1.0.7 -* GitHub: https://github.com/marjoleinF/pre -* Source code: https://github.com/cran/pre -* Date/Publication: 2024-01-12 19:30:02 UTC -* Number of recursive dependencies: 152 +* Version: 1.0-1 +* GitHub: NA +* Source code: https://github.com/cran/qreport +* Date/Publication: 2024-05-26 21:50:03 UTC +* Number of recursive dependencies: 77 -Run `revdepcheck::cloud_details(, "pre")` for more info +Run `revdepcheck::cloud_details(, "qreport")` for more info
## In both -* checking whether package ‘pre’ can be installed ... ERROR +* checking whether package ‘qreport’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/pre/new/pre.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/qreport/new/qreport.Rcheck/00install.out’ for details. ``` ## Installation @@ -6014,215 +5463,135 @@ Run `revdepcheck::cloud_details(, "pre")` for more info ### Devel ``` -* installing *source* package ‘pre’ ... -** package ‘pre’ successfully unpacked and MD5 sums checked +* installing *source* package ‘qreport’ ... +** package ‘qreport’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘pre’ -* removing ‘/tmp/workdir/pre/new/pre.Rcheck/pre’ +ERROR: lazy loading failed for package ‘qreport’ +* removing ‘/tmp/workdir/qreport/new/qreport.Rcheck/qreport’ ``` ### CRAN ``` -* installing *source* package ‘pre’ ... -** package ‘pre’ successfully unpacked and MD5 sums checked +* installing *source* package ‘qreport’ ... +** package ‘qreport’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘pre’ -* removing ‘/tmp/workdir/pre/old/pre.Rcheck/pre’ +ERROR: lazy loading failed for package ‘qreport’ +* removing ‘/tmp/workdir/qreport/old/qreport.Rcheck/qreport’ ``` -# PRECAST +# qris
-* Version: 1.6.5 -* GitHub: https://github.com/feiyoung/PRECAST -* Source code: https://github.com/cran/PRECAST -* Date/Publication: 2024-03-19 08:30:02 UTC -* Number of recursive dependencies: 225 +* Version: 1.1.1 +* GitHub: https://github.com/Kyuhyun07/qris +* Source code: https://github.com/cran/qris +* Date/Publication: 2024-03-05 14:40:03 UTC +* Number of recursive dependencies: 55 -Run `revdepcheck::cloud_details(, "PRECAST")` for more info +Run `revdepcheck::cloud_details(, "qris")` for more info
-## Error before installation +## In both -### Devel - -``` -* using log directory ‘/tmp/workdir/PRECAST/new/PRECAST.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘PRECAST/DESCRIPTION’ ... OK -... -* this is package ‘PRECAST’ version ‘1.6.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'Seurat', 'DR.SC' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/PRECAST/old/PRECAST.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘PRECAST/DESCRIPTION’ ... OK -... -* this is package ‘PRECAST’ version ‘1.6.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'Seurat', 'DR.SC' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# ProFAST - -
- -* Version: 1.4 -* GitHub: https://github.com/feiyoung/ProFAST -* Source code: https://github.com/cran/ProFAST -* Date/Publication: 2024-03-18 08:10:06 UTC -* Number of recursive dependencies: 253 - -Run `revdepcheck::cloud_details(, "ProFAST")` for more info - -
+* checking whether package ‘qris’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/qris/new/qris.Rcheck/00install.out’ for details. + ``` -## Error before installation +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/ProFAST/new/ProFAST.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ProFAST/DESCRIPTION’ ... OK +* installing *source* package ‘qris’ ... +** package ‘qris’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o ... -* this is package ‘ProFAST’ version ‘1.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'DR.SC', 'PRECAST', 'Seurat' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +installing to /tmp/workdir/qris/new/qris.Rcheck/00LOCK-qris/00new/qris/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘qris’ +* removing ‘/tmp/workdir/qris/new/qris.Rcheck/qris’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/ProFAST/old/ProFAST.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ProFAST/DESCRIPTION’ ... OK +* installing *source* package ‘qris’ ... +** package ‘qris’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o ... -* this is package ‘ProFAST’ version ‘1.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'DR.SC', 'PRECAST', 'Seurat' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +installing to /tmp/workdir/qris/old/qris.Rcheck/00LOCK-qris/00new/qris/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘qris’ +* removing ‘/tmp/workdir/qris/old/qris.Rcheck/qris’ ``` -# pscore +# qte
-* Version: 0.4.0 -* GitHub: https://github.com/JWiley/score-project -* Source code: https://github.com/cran/pscore -* Date/Publication: 2022-05-13 22:30:02 UTC -* Number of recursive dependencies: 165 +* Version: 1.3.1 +* GitHub: NA +* Source code: https://github.com/cran/qte +* Date/Publication: 2022-09-01 14:30:02 UTC +* Number of recursive dependencies: 87 -Run `revdepcheck::cloud_details(, "pscore")` for more info +Run `revdepcheck::cloud_details(, "qte")` for more info
## In both -* checking whether package ‘pscore’ can be installed ... ERROR +* checking whether package ‘qte’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/qte/new/qte.Rcheck/00install.out’ for details. ``` ## Installation @@ -6230,61 +5599,63 @@ Run `revdepcheck::cloud_details(, "pscore")` for more info ### Devel ``` -* installing *source* package ‘pscore’ ... -** package ‘pscore’ successfully unpacked and MD5 sums checked +* installing *source* package ‘qte’ ... +** package ‘qte’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘pscore’ -* removing ‘/tmp/workdir/pscore/new/pscore.Rcheck/pscore’ +ERROR: lazy loading failed for package ‘qte’ +* removing ‘/tmp/workdir/qte/new/qte.Rcheck/qte’ ``` ### CRAN ``` -* installing *source* package ‘pscore’ ... -** package ‘pscore’ successfully unpacked and MD5 sums checked +* installing *source* package ‘qte’ ... +** package ‘qte’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘pscore’ -* removing ‘/tmp/workdir/pscore/old/pscore.Rcheck/pscore’ +ERROR: lazy loading failed for package ‘qte’ +* removing ‘/tmp/workdir/qte/old/qte.Rcheck/qte’ ``` -# psfmi +# quid
-* Version: 1.4.0 -* GitHub: https://github.com/mwheymans/psfmi -* Source code: https://github.com/cran/psfmi -* Date/Publication: 2023-06-17 22:40:02 UTC -* Number of recursive dependencies: 160 +* Version: 0.0.1 +* GitHub: NA +* Source code: https://github.com/cran/quid +* Date/Publication: 2021-12-09 09:00:02 UTC +* Number of recursive dependencies: 95 -Run `revdepcheck::cloud_details(, "psfmi")` for more info +Run `revdepcheck::cloud_details(, "quid")` for more info
## In both -* checking whether package ‘psfmi’ can be installed ... ERROR +* checking whether package ‘quid’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/psfmi/new/psfmi.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/quid/new/quid.Rcheck/00install.out’ for details. ``` ## Installation @@ -6292,8 +5663,8 @@ Run `revdepcheck::cloud_details(, "psfmi")` for more info ### Devel ``` -* installing *source* package ‘psfmi’ ... -** package ‘psfmi’ successfully unpacked and MD5 sums checked +* installing *source* package ‘quid’ ... +** package ‘quid’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data @@ -6304,16 +5675,16 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘psfmi’ -* removing ‘/tmp/workdir/psfmi/new/psfmi.Rcheck/psfmi’ +ERROR: lazy loading failed for package ‘quid’ +* removing ‘/tmp/workdir/quid/new/quid.Rcheck/quid’ ``` ### CRAN ``` -* installing *source* package ‘psfmi’ ... -** package ‘psfmi’ successfully unpacked and MD5 sums checked +* installing *source* package ‘quid’ ... +** package ‘quid’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data @@ -6324,31 +5695,31 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘psfmi’ -* removing ‘/tmp/workdir/psfmi/old/psfmi.Rcheck/psfmi’ +ERROR: lazy loading failed for package ‘quid’ +* removing ‘/tmp/workdir/quid/old/quid.Rcheck/quid’ ``` -# qreport +# RATest
-* Version: 1.0-0 -* GitHub: NA -* Source code: https://github.com/cran/qreport -* Date/Publication: 2023-09-12 22:10:02 UTC -* Number of recursive dependencies: 77 +* Version: 0.1.10 +* GitHub: https://github.com/ignaciomsarmiento/RATest +* Source code: https://github.com/cran/RATest +* Date/Publication: 2022-09-29 04:30:02 UTC +* Number of recursive dependencies: 54 -Run `revdepcheck::cloud_details(, "qreport")` for more info +Run `revdepcheck::cloud_details(, "RATest")` for more info
## In both -* checking whether package ‘qreport’ can be installed ... ERROR +* checking whether package ‘RATest’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/qreport/new/qreport.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/RATest/new/RATest.Rcheck/00install.out’ for details. ``` ## Installation @@ -6356,57 +5727,63 @@ Run `revdepcheck::cloud_details(, "qreport")` for more info ### Devel ``` -* installing *source* package ‘qreport’ ... -** package ‘qreport’ successfully unpacked and MD5 sums checked +* installing *source* package ‘RATest’ ... +** package ‘RATest’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘qreport’ -* removing ‘/tmp/workdir/qreport/new/qreport.Rcheck/qreport’ +ERROR: lazy loading failed for package ‘RATest’ +* removing ‘/tmp/workdir/RATest/new/RATest.Rcheck/RATest’ ``` ### CRAN ``` -* installing *source* package ‘qreport’ ... -** package ‘qreport’ successfully unpacked and MD5 sums checked +* installing *source* package ‘RATest’ ... +** package ‘RATest’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** byte-compile and prepare package for lazy loading +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘qreport’ -* removing ‘/tmp/workdir/qreport/old/qreport.Rcheck/qreport’ +ERROR: lazy loading failed for package ‘RATest’ +* removing ‘/tmp/workdir/RATest/old/RATest.Rcheck/RATest’ ``` -# qris +# RcmdrPlugin.RiskDemo
-* Version: 1.1.1 -* GitHub: https://github.com/Kyuhyun07/qris -* Source code: https://github.com/cran/qris -* Date/Publication: 2024-03-05 14:40:03 UTC -* Number of recursive dependencies: 55 +* Version: 3.2 +* GitHub: NA +* Source code: https://github.com/cran/RcmdrPlugin.RiskDemo +* Date/Publication: 2024-02-06 09:20:02 UTC +* Number of recursive dependencies: 200 -Run `revdepcheck::cloud_details(, "qris")` for more info +Run `revdepcheck::cloud_details(, "RcmdrPlugin.RiskDemo")` for more info
## In both -* checking whether package ‘qris’ can be installed ... ERROR +* checking whether package ‘RcmdrPlugin.RiskDemo’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/qris/new/qris.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/RcmdrPlugin.RiskDemo/new/RcmdrPlugin.RiskDemo.Rcheck/00install.out’ for details. ``` ## Installation @@ -6414,77 +5791,71 @@ Run `revdepcheck::cloud_details(, "qris")` for more info ### Devel ``` -* installing *source* package ‘qris’ ... -** package ‘qris’ successfully unpacked and MD5 sums checked +* installing *source* package ‘RcmdrPlugin.RiskDemo’ ... +** package ‘RcmdrPlugin.RiskDemo’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o -... -installing to /tmp/workdir/qris/new/qris.Rcheck/00LOCK-qris/00new/qris/libs ** R +** data ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘qris’ -* removing ‘/tmp/workdir/qris/new/qris.Rcheck/qris’ +ERROR: lazy loading failed for package ‘RcmdrPlugin.RiskDemo’ +* removing ‘/tmp/workdir/RcmdrPlugin.RiskDemo/new/RcmdrPlugin.RiskDemo.Rcheck/RcmdrPlugin.RiskDemo’ ``` ### CRAN ``` -* installing *source* package ‘qris’ ... -** package ‘qris’ successfully unpacked and MD5 sums checked +* installing *source* package ‘RcmdrPlugin.RiskDemo’ ... +** package ‘RcmdrPlugin.RiskDemo’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o -... -installing to /tmp/workdir/qris/old/qris.Rcheck/00LOCK-qris/00new/qris/libs ** R +** data ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘qris’ -* removing ‘/tmp/workdir/qris/old/qris.Rcheck/qris’ +ERROR: lazy loading failed for package ‘RcmdrPlugin.RiskDemo’ +* removing ‘/tmp/workdir/RcmdrPlugin.RiskDemo/old/RcmdrPlugin.RiskDemo.Rcheck/RcmdrPlugin.RiskDemo’ ``` -# qte +# rddtools
-* Version: 1.3.1 -* GitHub: NA -* Source code: https://github.com/cran/qte -* Date/Publication: 2022-09-01 14:30:02 UTC -* Number of recursive dependencies: 87 +* Version: 1.6.0 +* GitHub: https://github.com/bquast/rddtools +* Source code: https://github.com/cran/rddtools +* Date/Publication: 2022-01-10 12:42:49 UTC +* Number of recursive dependencies: 106 -Run `revdepcheck::cloud_details(, "qte")` for more info +Run `revdepcheck::cloud_details(, "rddtools")` for more info
## In both -* checking whether package ‘qte’ can be installed ... ERROR +* checking whether package ‘rddtools’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/qte/new/qte.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/00install.out’ for details. ``` ## Installation @@ -6492,63 +5863,59 @@ Run `revdepcheck::cloud_details(, "qte")` for more info ### Devel ``` -* installing *source* package ‘qte’ ... -** package ‘qte’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rddtools’ ... +** package ‘rddtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘qte’ -* removing ‘/tmp/workdir/qte/new/qte.Rcheck/qte’ +ERROR: lazy loading failed for package ‘rddtools’ +* removing ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/rddtools’ ``` ### CRAN ``` -* installing *source* package ‘qte’ ... -** package ‘qte’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rddtools’ ... +** package ‘rddtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘qte’ -* removing ‘/tmp/workdir/qte/old/qte.Rcheck/qte’ +ERROR: lazy loading failed for package ‘rddtools’ +* removing ‘/tmp/workdir/rddtools/old/rddtools.Rcheck/rddtools’ ``` -# quid +# riskRegression
-* Version: 0.0.1 -* GitHub: NA -* Source code: https://github.com/cran/quid -* Date/Publication: 2021-12-09 09:00:02 UTC -* Number of recursive dependencies: 95 +* Version: 2023.12.21 +* GitHub: https://github.com/tagteam/riskRegression +* Source code: https://github.com/cran/riskRegression +* Date/Publication: 2023-12-19 17:00:02 UTC +* Number of recursive dependencies: 186 -Run `revdepcheck::cloud_details(, "quid")` for more info +Run `revdepcheck::cloud_details(, "riskRegression")` for more info
## In both -* checking whether package ‘quid’ can be installed ... ERROR +* checking whether package ‘riskRegression’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/quid/new/quid.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/riskRegression/new/riskRegression.Rcheck/00install.out’ for details. ``` ## Installation @@ -6556,63 +5923,82 @@ Run `revdepcheck::cloud_details(, "quid")` for more info ### Devel ``` -* installing *source* package ‘quid’ ... -** package ‘quid’ successfully unpacked and MD5 sums checked +* installing *source* package ‘riskRegression’ ... +** package ‘riskRegression’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c IC-Nelson-Aalen-cens-time.cpp -o IC-Nelson-Aalen-cens-time.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c aucCVFun.cpp -o aucCVFun.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c baseHaz.cpp -o baseHaz.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c calcSeCSC.cpp -o calcSeCSC.o +... ** R ** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘quid’ -* removing ‘/tmp/workdir/quid/new/quid.Rcheck/quid’ +ERROR: lazy loading failed for package ‘riskRegression’ +* removing ‘/tmp/workdir/riskRegression/new/riskRegression.Rcheck/riskRegression’ ``` ### CRAN ``` -* installing *source* package ‘quid’ ... -** package ‘quid’ successfully unpacked and MD5 sums checked +* installing *source* package ‘riskRegression’ ... +** package ‘riskRegression’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c IC-Nelson-Aalen-cens-time.cpp -o IC-Nelson-Aalen-cens-time.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c aucCVFun.cpp -o aucCVFun.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c baseHaz.cpp -o baseHaz.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c calcSeCSC.cpp -o calcSeCSC.o +... ** R ** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘quid’ -* removing ‘/tmp/workdir/quid/old/quid.Rcheck/quid’ +ERROR: lazy loading failed for package ‘riskRegression’ +* removing ‘/tmp/workdir/riskRegression/old/riskRegression.Rcheck/riskRegression’ ``` -# RATest +# rms
-* Version: 0.1.10 -* GitHub: https://github.com/ignaciomsarmiento/RATest -* Source code: https://github.com/cran/RATest -* Date/Publication: 2022-09-29 04:30:02 UTC -* Number of recursive dependencies: 54 +* Version: 6.8-1 +* GitHub: https://github.com/harrelfe/rms +* Source code: https://github.com/cran/rms +* Date/Publication: 2024-05-27 12:00:02 UTC +* Number of recursive dependencies: 145 -Run `revdepcheck::cloud_details(, "RATest")` for more info +Run `revdepcheck::cloud_details(, "rms")` for more info
## In both -* checking whether package ‘RATest’ can be installed ... ERROR +* checking whether package ‘rms’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/RATest/new/RATest.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rms/new/rms.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘rmsb’ ``` ## Installation @@ -6620,63 +6006,77 @@ Run `revdepcheck::cloud_details(, "RATest")` for more info ### Devel ``` -* installing *source* package ‘RATest’ ... -** package ‘RATest’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rms’ ... +** package ‘rms’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o +gfortran -fpic -g -O2 -c lrmfit.f -o lrmfit.o +gfortran -fpic -g -O2 -c mlmats.f -o mlmats.o +gfortran -fpic -g -O2 -c ormuv.f -o ormuv.o +... ** R -** data -*** moving datasets to lazyload DB +** demo ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘RATest’ -* removing ‘/tmp/workdir/RATest/new/RATest.Rcheck/RATest’ +ERROR: lazy loading failed for package ‘rms’ +* removing ‘/tmp/workdir/rms/new/rms.Rcheck/rms’ ``` ### CRAN ``` -* installing *source* package ‘RATest’ ... -** package ‘RATest’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rms’ ... +** package ‘rms’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o +gfortran -fpic -g -O2 -c lrmfit.f -o lrmfit.o +gfortran -fpic -g -O2 -c mlmats.f -o mlmats.o +gfortran -fpic -g -O2 -c ormuv.f -o ormuv.o +... ** R -** data -*** moving datasets to lazyload DB +** demo ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘RATest’ -* removing ‘/tmp/workdir/RATest/old/RATest.Rcheck/RATest’ +ERROR: lazy loading failed for package ‘rms’ +* removing ‘/tmp/workdir/rms/old/rms.Rcheck/rms’ ``` -# RcmdrPlugin.RiskDemo +# rmsb
-* Version: 3.2 +* Version: 1.1-1 * GitHub: NA -* Source code: https://github.com/cran/RcmdrPlugin.RiskDemo -* Date/Publication: 2024-02-06 09:20:02 UTC -* Number of recursive dependencies: 208 +* Source code: https://github.com/cran/rmsb +* Date/Publication: 2024-07-08 11:10:03 UTC +* Number of recursive dependencies: 135 -Run `revdepcheck::cloud_details(, "RcmdrPlugin.RiskDemo")` for more info +Run `revdepcheck::cloud_details(, "rmsb")` for more info
## In both -* checking whether package ‘RcmdrPlugin.RiskDemo’ can be installed ... ERROR +* checking whether package ‘rmsb’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/RcmdrPlugin.RiskDemo/new/RcmdrPlugin.RiskDemo.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details. ``` ## Installation @@ -6684,61 +6084,51 @@ Run `revdepcheck::cloud_details(, "RcmdrPlugin.RiskDemo")` for more info ### Devel ``` -* installing *source* package ‘RcmdrPlugin.RiskDemo’ ... -** package ‘RcmdrPlugin.RiskDemo’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rmsb’ ... +** package ‘rmsb’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘RcmdrPlugin.RiskDemo’ -* removing ‘/tmp/workdir/RcmdrPlugin.RiskDemo/new/RcmdrPlugin.RiskDemo.Rcheck/RcmdrPlugin.RiskDemo’ +ERROR: configuration failed for package ‘rmsb’ +* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’ ``` ### CRAN ``` -* installing *source* package ‘RcmdrPlugin.RiskDemo’ ... -** package ‘RcmdrPlugin.RiskDemo’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rmsb’ ... +** package ‘rmsb’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘RcmdrPlugin.RiskDemo’ -* removing ‘/tmp/workdir/RcmdrPlugin.RiskDemo/old/RcmdrPlugin.RiskDemo.Rcheck/RcmdrPlugin.RiskDemo’ +ERROR: configuration failed for package ‘rmsb’ +* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’ ``` -# rddtools +# robmed
-* Version: 1.6.0 -* GitHub: https://github.com/bquast/rddtools -* Source code: https://github.com/cran/rddtools -* Date/Publication: 2022-01-10 12:42:49 UTC -* Number of recursive dependencies: 102 +* Version: 1.0.2 +* GitHub: https://github.com/aalfons/robmed +* Source code: https://github.com/cran/robmed +* Date/Publication: 2023-06-16 23:00:02 UTC +* Number of recursive dependencies: 60 -Run `revdepcheck::cloud_details(, "rddtools")` for more info +Run `revdepcheck::cloud_details(, "robmed")` for more info
## In both -* checking whether package ‘rddtools’ can be installed ... ERROR +* checking whether package ‘robmed’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/robmed/new/robmed.Rcheck/00install.out’ for details. ``` ## Installation @@ -6746,59 +6136,63 @@ Run `revdepcheck::cloud_details(, "rddtools")` for more info ### Devel ``` -* installing *source* package ‘rddtools’ ... -** package ‘rddtools’ successfully unpacked and MD5 sums checked +* installing *source* package ‘robmed’ ... +** package ‘robmed’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘rddtools’ -* removing ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/rddtools’ +ERROR: lazy loading failed for package ‘robmed’ +* removing ‘/tmp/workdir/robmed/new/robmed.Rcheck/robmed’ ``` ### CRAN ``` -* installing *source* package ‘rddtools’ ... -** package ‘rddtools’ successfully unpacked and MD5 sums checked +* installing *source* package ‘robmed’ ... +** package ‘robmed’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘rddtools’ -* removing ‘/tmp/workdir/rddtools/old/rddtools.Rcheck/rddtools’ +ERROR: lazy loading failed for package ‘robmed’ +* removing ‘/tmp/workdir/robmed/old/robmed.Rcheck/robmed’ ``` -# riskRegression +# robmedExtra
-* Version: 2023.12.21 -* GitHub: https://github.com/tagteam/riskRegression -* Source code: https://github.com/cran/riskRegression -* Date/Publication: 2023-12-19 17:00:02 UTC -* Number of recursive dependencies: 186 +* Version: 0.1.0 +* GitHub: https://github.com/aalfons/robmedExtra +* Source code: https://github.com/cran/robmedExtra +* Date/Publication: 2023-06-02 14:40:02 UTC +* Number of recursive dependencies: 96 -Run `revdepcheck::cloud_details(, "riskRegression")` for more info +Run `revdepcheck::cloud_details(, "robmedExtra")` for more info
## In both -* checking whether package ‘riskRegression’ can be installed ... ERROR +* checking whether package ‘robmedExtra’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/riskRegression/new/riskRegression.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/robmedExtra/new/robmedExtra.Rcheck/00install.out’ for details. ``` ## Installation @@ -6806,158 +6200,119 @@ Run `revdepcheck::cloud_details(, "riskRegression")` for more info ### Devel ``` -* installing *source* package ‘riskRegression’ ... -** package ‘riskRegression’ successfully unpacked and MD5 sums checked +* installing *source* package ‘robmedExtra’ ... +** package ‘robmedExtra’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c IC-Nelson-Aalen-cens-time.cpp -o IC-Nelson-Aalen-cens-time.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c aucCVFun.cpp -o aucCVFun.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c baseHaz.cpp -o baseHaz.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c calcSeCSC.cpp -o calcSeCSC.o -... ** R -** data ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘robmed’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘riskRegression’ -* removing ‘/tmp/workdir/riskRegression/new/riskRegression.Rcheck/riskRegression’ +ERROR: lazy loading failed for package ‘robmedExtra’ +* removing ‘/tmp/workdir/robmedExtra/new/robmedExtra.Rcheck/robmedExtra’ ``` ### CRAN ``` -* installing *source* package ‘riskRegression’ ... -** package ‘riskRegression’ successfully unpacked and MD5 sums checked +* installing *source* package ‘robmedExtra’ ... +** package ‘robmedExtra’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c IC-Nelson-Aalen-cens-time.cpp -o IC-Nelson-Aalen-cens-time.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c aucCVFun.cpp -o aucCVFun.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c baseHaz.cpp -o baseHaz.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c calcSeCSC.cpp -o calcSeCSC.o -... ** R -** data ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘robmed’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘riskRegression’ -* removing ‘/tmp/workdir/riskRegression/old/riskRegression.Rcheck/riskRegression’ +ERROR: lazy loading failed for package ‘robmedExtra’ +* removing ‘/tmp/workdir/robmedExtra/old/robmedExtra.Rcheck/robmedExtra’ ``` -# rliger +# RPPanalyzer
-* Version: 2.0.1 -* GitHub: https://github.com/welch-lab/liger -* Source code: https://github.com/cran/rliger -* Date/Publication: 2024-04-04 23:20:02 UTC -* Number of recursive dependencies: 218 +* Version: 1.4.9 +* GitHub: NA +* Source code: https://github.com/cran/RPPanalyzer +* Date/Publication: 2024-01-25 11:00:02 UTC +* Number of recursive dependencies: 82 -Run `revdepcheck::cloud_details(, "rliger")` for more info +Run `revdepcheck::cloud_details(, "RPPanalyzer")` for more info
-## Error before installation - -### Devel +## In both -``` -* using log directory ‘/tmp/workdir/rliger/new/rliger.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘rliger/DESCRIPTION’ ... OK -... - [ FAIL 1 | WARN 0 | SKIP 5 | PASS 1234 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘liger-vignette.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 ERRORs, 2 NOTEs +* checking whether package ‘RPPanalyzer’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/RPPanalyzer/new/RPPanalyzer.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘RPPanalyzer’ ... +** package ‘RPPanalyzer’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RPPanalyzer’ +* removing ‘/tmp/workdir/RPPanalyzer/new/RPPanalyzer.Rcheck/RPPanalyzer’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/rliger/old/rliger.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘rliger/DESCRIPTION’ ... OK -... - [ FAIL 1 | WARN 0 | SKIP 5 | PASS 1234 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘liger-vignette.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 ERRORs, 2 NOTEs - - - +* installing *source* package ‘RPPanalyzer’ ... +** package ‘RPPanalyzer’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RPPanalyzer’ +* removing ‘/tmp/workdir/RPPanalyzer/old/RPPanalyzer.Rcheck/RPPanalyzer’ ``` -# rms +# RQdeltaCT
-* Version: 6.8-0 -* GitHub: https://github.com/harrelfe/rms -* Source code: https://github.com/cran/rms -* Date/Publication: 2024-03-11 16:20:02 UTC -* Number of recursive dependencies: 154 +* Version: 1.3.0 +* GitHub: NA +* Source code: https://github.com/cran/RQdeltaCT +* Date/Publication: 2024-04-17 15:50:02 UTC +* Number of recursive dependencies: 165 -Run `revdepcheck::cloud_details(, "rms")` for more info +Run `revdepcheck::cloud_details(, "RQdeltaCT")` for more info
## In both -* checking whether package ‘rms’ can be installed ... ERROR +* checking whether package ‘RQdeltaCT’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/rms/new/rms.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘rmsb’ + See ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/00install.out’ for details. ``` ## Installation @@ -6965,77 +6320,68 @@ Run `revdepcheck::cloud_details(, "rms")` for more info ### Devel ``` -* installing *source* package ‘rms’ ... -** package ‘rms’ successfully unpacked and MD5 sums checked +* installing *source* package ‘RQdeltaCT’ ... +** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gfortran -fpic -g -O2 -c lrmfit.f -o lrmfit.o -gfortran -fpic -g -O2 -c mlmats.f -o mlmats.o -gfortran -fpic -g -O2 -c ormuv.f -o ormuv.o -... ** R -** demo +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘rms’ -* removing ‘/tmp/workdir/rms/new/rms.Rcheck/rms’ +ERROR: lazy loading failed for package ‘RQdeltaCT’ +* removing ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/RQdeltaCT’ ``` ### CRAN ``` -* installing *source* package ‘rms’ ... -** package ‘rms’ successfully unpacked and MD5 sums checked +* installing *source* package ‘RQdeltaCT’ ... +** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gfortran -fpic -g -O2 -c lrmfit.f -o lrmfit.o -gfortran -fpic -g -O2 -c mlmats.f -o mlmats.o -gfortran -fpic -g -O2 -c ormuv.f -o ormuv.o -... ** R -** demo +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘rms’ -* removing ‘/tmp/workdir/rms/old/rms.Rcheck/rms’ +ERROR: lazy loading failed for package ‘RQdeltaCT’ +* removing ‘/tmp/workdir/RQdeltaCT/old/RQdeltaCT.Rcheck/RQdeltaCT’ ``` -# rmsb +# scCustomize
-* Version: 1.1-0 -* GitHub: NA -* Source code: https://github.com/cran/rmsb -* Date/Publication: 2024-03-12 15:50:02 UTC -* Number of recursive dependencies: 144 +* Version: 2.1.2 +* GitHub: https://github.com/samuel-marsh/scCustomize +* Source code: https://github.com/cran/scCustomize +* Date/Publication: 2024-02-28 19:40:02 UTC +* Number of recursive dependencies: 267 -Run `revdepcheck::cloud_details(, "rmsb")` for more info +Run `revdepcheck::cloud_details(, "scCustomize")` for more info
## In both -* checking whether package ‘rmsb’ can be installed ... ERROR +* checking whether package ‘scCustomize’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘Nebulosa’ ``` ## Installation @@ -7043,51 +6389,59 @@ Run `revdepcheck::cloud_details(, "rmsb")` for more info ### Devel ``` -* installing *source* package ‘rmsb’ ... -** package ‘rmsb’ successfully unpacked and MD5 sums checked +* installing *source* package ‘scCustomize’ ... +** package ‘scCustomize’ successfully unpacked and MD5 sums checked ** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required Execution halted -ERROR: configuration failed for package ‘rmsb’ -* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’ +ERROR: lazy loading failed for package ‘scCustomize’ +* removing ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/scCustomize’ ``` ### CRAN ``` -* installing *source* package ‘rmsb’ ... -** package ‘rmsb’ successfully unpacked and MD5 sums checked +* installing *source* package ‘scCustomize’ ... +** package ‘scCustomize’ successfully unpacked and MD5 sums checked ** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required Execution halted -ERROR: configuration failed for package ‘rmsb’ -* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’ +ERROR: lazy loading failed for package ‘scCustomize’ +* removing ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/scCustomize’ ``` -# robmed +# SCdeconR
-* Version: 1.0.2 -* GitHub: https://github.com/aalfons/robmed -* Source code: https://github.com/cran/robmed -* Date/Publication: 2023-06-16 23:00:02 UTC -* Number of recursive dependencies: 60 +* Version: 1.0.0 +* GitHub: https://github.com/Liuy12/SCdeconR +* Source code: https://github.com/cran/SCdeconR +* Date/Publication: 2024-03-22 19:20:02 UTC +* Number of recursive dependencies: 236 -Run `revdepcheck::cloud_details(, "robmed")` for more info +Run `revdepcheck::cloud_details(, "SCdeconR")` for more info
## In both -* checking whether package ‘robmed’ can be installed ... ERROR +* checking whether package ‘SCdeconR’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/robmed/new/robmed.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/SCdeconR/new/SCdeconR.Rcheck/00install.out’ for details. ``` ## Installation @@ -7095,63 +6449,57 @@ Run `revdepcheck::cloud_details(, "robmed")` for more info ### Devel ``` -* installing *source* package ‘robmed’ ... -** package ‘robmed’ successfully unpacked and MD5 sums checked +* installing *source* package ‘SCdeconR’ ... +** package ‘SCdeconR’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required Execution halted -ERROR: lazy loading failed for package ‘robmed’ -* removing ‘/tmp/workdir/robmed/new/robmed.Rcheck/robmed’ +ERROR: lazy loading failed for package ‘SCdeconR’ +* removing ‘/tmp/workdir/SCdeconR/new/SCdeconR.Rcheck/SCdeconR’ ``` ### CRAN ``` -* installing *source* package ‘robmed’ ... -** package ‘robmed’ successfully unpacked and MD5 sums checked +* installing *source* package ‘SCdeconR’ ... +** package ‘SCdeconR’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required Execution halted -ERROR: lazy loading failed for package ‘robmed’ -* removing ‘/tmp/workdir/robmed/old/robmed.Rcheck/robmed’ +ERROR: lazy loading failed for package ‘SCdeconR’ +* removing ‘/tmp/workdir/SCdeconR/old/SCdeconR.Rcheck/SCdeconR’ ``` -# robmedExtra +# scGate
-* Version: 0.1.0 -* GitHub: https://github.com/aalfons/robmedExtra -* Source code: https://github.com/cran/robmedExtra -* Date/Publication: 2023-06-02 14:40:02 UTC -* Number of recursive dependencies: 96 +* Version: 1.6.2 +* GitHub: https://github.com/carmonalab/scGate +* Source code: https://github.com/cran/scGate +* Date/Publication: 2024-04-23 08:50:02 UTC +* Number of recursive dependencies: 179 -Run `revdepcheck::cloud_details(, "robmedExtra")` for more info +Run `revdepcheck::cloud_details(, "scGate")` for more info
## In both -* checking whether package ‘robmedExtra’ can be installed ... ERROR +* checking whether package ‘scGate’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/robmedExtra/new/robmedExtra.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/scGate/new/scGate.Rcheck/00install.out’ for details. ``` ## Installation @@ -7159,57 +6507,71 @@ Run `revdepcheck::cloud_details(, "robmedExtra")` for more info ### Devel ``` -* installing *source* package ‘robmedExtra’ ... -** package ‘robmedExtra’ successfully unpacked and MD5 sums checked +* installing *source* package ‘scGate’ ... +** package ‘scGate’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘query.seurat’ +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘query.seurat’ ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘robmed’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘robmedExtra’ -* removing ‘/tmp/workdir/robmedExtra/new/robmedExtra.Rcheck/robmedExtra’ +ERROR: lazy loading failed for package ‘scGate’ +* removing ‘/tmp/workdir/scGate/new/scGate.Rcheck/scGate’ ``` ### CRAN ``` -* installing *source* package ‘robmedExtra’ ... -** package ‘robmedExtra’ successfully unpacked and MD5 sums checked +* installing *source* package ‘scGate’ ... +** package ‘scGate’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘query.seurat’ +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘query.seurat’ ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘robmed’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘robmedExtra’ -* removing ‘/tmp/workdir/robmedExtra/old/robmedExtra.Rcheck/robmedExtra’ +ERROR: lazy loading failed for package ‘scGate’ +* removing ‘/tmp/workdir/scGate/old/scGate.Rcheck/scGate’ ``` -# RPPanalyzer +# SCIntRuler
-* Version: 1.4.9 -* GitHub: NA -* Source code: https://github.com/cran/RPPanalyzer -* Date/Publication: 2024-01-25 11:00:02 UTC -* Number of recursive dependencies: 82 +* Version: 0.99.6 +* GitHub: https://github.com/yuelyu21/SCIntRuler +* Source code: https://github.com/cran/SCIntRuler +* Date/Publication: 2024-07-12 15:20:08 UTC +* Number of recursive dependencies: 202 -Run `revdepcheck::cloud_details(, "RPPanalyzer")` for more info +Run `revdepcheck::cloud_details(, "SCIntRuler")` for more info
## In both -* checking whether package ‘RPPanalyzer’ can be installed ... ERROR +* checking whether package ‘SCIntRuler’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/RPPanalyzer/new/RPPanalyzer.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00install.out’ for details. ``` ## Installation @@ -7217,61 +6579,77 @@ Run `revdepcheck::cloud_details(, "RPPanalyzer")` for more info ### Devel ``` -* installing *source* package ‘RPPanalyzer’ ... -** package ‘RPPanalyzer’ successfully unpacked and MD5 sums checked +* installing *source* package ‘SCIntRuler’ ... +** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs ** R +... ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘RPPanalyzer’ -* removing ‘/tmp/workdir/RPPanalyzer/new/RPPanalyzer.Rcheck/RPPanalyzer’ +ERROR: lazy loading failed for package ‘SCIntRuler’ +* removing ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/SCIntRuler’ ``` ### CRAN ``` -* installing *source* package ‘RPPanalyzer’ ... -** package ‘RPPanalyzer’ successfully unpacked and MD5 sums checked +* installing *source* package ‘SCIntRuler’ ... +** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs ** R +... ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘RPPanalyzer’ -* removing ‘/tmp/workdir/RPPanalyzer/old/RPPanalyzer.Rcheck/RPPanalyzer’ +ERROR: lazy loading failed for package ‘SCIntRuler’ +* removing ‘/tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/SCIntRuler’ ``` -# rstanarm +# scMappR
-* Version: 2.32.1 -* GitHub: https://github.com/stan-dev/rstanarm -* Source code: https://github.com/cran/rstanarm -* Date/Publication: 2024-01-18 23:00:03 UTC -* Number of recursive dependencies: 138 +* Version: 1.0.11 +* GitHub: NA +* Source code: https://github.com/cran/scMappR +* Date/Publication: 2023-06-30 08:40:08 UTC +* Number of recursive dependencies: 234 -Run `revdepcheck::cloud_details(, "rstanarm")` for more info +Run `revdepcheck::cloud_details(, "scMappR")` for more info
## In both -* checking whether package ‘rstanarm’ can be installed ... ERROR +* checking whether package ‘scMappR’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/00install.out’ for details. ``` ## Installation @@ -7279,662 +6657,118 @@ Run `revdepcheck::cloud_details(, "rstanarm")` for more info ### Devel ``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked +* installing *source* package ‘scMappR’ ... +** package ‘scMappR’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan -Wrote C++ file "stan_files/bernoulli.cc" - - -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/bernoulli.o] Error 1 -rm stan_files/bernoulli.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scMappR’ +* removing ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/scMappR’ ``` ### CRAN ``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked +* installing *source* package ‘scMappR’ ... +** package ‘scMappR’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan -Wrote C++ file "stan_files/bernoulli.cc" - - -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/bernoulli.o] Error 1 -rm stan_files/bernoulli.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scMappR’ +* removing ‘/tmp/workdir/scMappR/old/scMappR.Rcheck/scMappR’ ``` -# scCustomize +# scpi
-* Version: 2.1.2 -* GitHub: https://github.com/samuel-marsh/scCustomize -* Source code: https://github.com/cran/scCustomize -* Date/Publication: 2024-02-28 19:40:02 UTC -* Number of recursive dependencies: 274 +* Version: 2.2.5 +* GitHub: NA +* Source code: https://github.com/cran/scpi +* Date/Publication: 2023-11-01 06:10:07 UTC +* Number of recursive dependencies: 98 -Run `revdepcheck::cloud_details(, "scCustomize")` for more info +Run `revdepcheck::cloud_details(, "scpi")` for more info
-## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scCustomize/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'Seurat', 'SeuratObject' - -Package suggested but not available for checking: ‘Nebulosa’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scCustomize/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'Seurat', 'SeuratObject' - -Package suggested but not available for checking: ‘Nebulosa’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# SCdeconR - -
- -* Version: 1.0.0 -* GitHub: https://github.com/Liuy12/SCdeconR -* Source code: https://github.com/cran/SCdeconR -* Date/Publication: 2024-03-22 19:20:02 UTC -* Number of recursive dependencies: 235 - -Run `revdepcheck::cloud_details(, "SCdeconR")` for more info +## In both -
+* checking whether package ‘scpi’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/scpi/new/scpi.Rcheck/00install.out’ for details. + ``` -## Error before installation +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/SCdeconR/new/SCdeconR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCdeconR/DESCRIPTION’ ... OK -... -* this is package ‘SCdeconR’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SCdeconR/old/SCdeconR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCdeconR/DESCRIPTION’ ... OK -... -* this is package ‘SCdeconR’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# scDiffCom - -
- -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/scDiffCom -* Date/Publication: 2023-11-03 18:40:02 UTC -* Number of recursive dependencies: 259 - -Run `revdepcheck::cloud_details(, "scDiffCom")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/scDiffCom/new/scDiffCom.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scDiffCom/DESCRIPTION’ ... OK -... -* this is package ‘scDiffCom’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/scDiffCom/old/scDiffCom.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scDiffCom/DESCRIPTION’ ... OK -... -* this is package ‘scDiffCom’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# scGate - -
- -* Version: 1.6.2 -* GitHub: https://github.com/carmonalab/scGate -* Source code: https://github.com/cran/scGate -* Date/Publication: 2024-04-23 08:50:02 UTC -* Number of recursive dependencies: 178 - -Run `revdepcheck::cloud_details(, "scGate")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/scGate/new/scGate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scGate/DESCRIPTION’ ... OK -... -* this is package ‘scGate’ version ‘1.6.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/scGate/old/scGate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scGate/DESCRIPTION’ ... OK -... -* this is package ‘scGate’ version ‘1.6.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# scMappR - -
- -* Version: 1.0.11 -* GitHub: NA -* Source code: https://github.com/cran/scMappR -* Date/Publication: 2023-06-30 08:40:08 UTC -* Number of recursive dependencies: 233 - -Run `revdepcheck::cloud_details(, "scMappR")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/scMappR/new/scMappR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scMappR/DESCRIPTION’ ... OK -... -* this is package ‘scMappR’ version ‘1.0.11’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/scMappR/old/scMappR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scMappR/DESCRIPTION’ ... OK -... -* this is package ‘scMappR’ version ‘1.0.11’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# SCORPIUS - -
- -* Version: 1.0.9 -* GitHub: https://github.com/rcannood/SCORPIUS -* Source code: https://github.com/cran/SCORPIUS -* Date/Publication: 2023-08-07 17:30:05 UTC -* Number of recursive dependencies: 202 - -Run `revdepcheck::cloud_details(, "SCORPIUS")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SCORPIUS/new/SCORPIUS.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCORPIUS/DESCRIPTION’ ... OK -... -Run `reticulate::py_last_error()` for details. -Execution halted - - ‘anndata.Rmd’ using ‘UTF-8’... failed - ‘ginhoux.Rmd’ using ‘UTF-8’... OK - ‘simulated-data.Rmd’ using ‘UTF-8’... OK - ‘singlecellexperiment.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SCORPIUS/old/SCORPIUS.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCORPIUS/DESCRIPTION’ ... OK -... -Run `reticulate::py_last_error()` for details. -Execution halted - - ‘anndata.Rmd’ using ‘UTF-8’... failed - ‘ginhoux.Rmd’ using ‘UTF-8’... OK - ‘simulated-data.Rmd’ using ‘UTF-8’... OK - ‘singlecellexperiment.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -# scpoisson - -
- -* Version: 0.0.1 -* GitHub: NA -* Source code: https://github.com/cran/scpoisson -* Date/Publication: 2022-08-17 06:50:02 UTC -* Number of recursive dependencies: 203 - -Run `revdepcheck::cloud_details(, "scpoisson")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/scpoisson/new/scpoisson.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scpoisson/DESCRIPTION’ ... OK -... -* this is package ‘scpoisson’ version ‘0.0.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'Seurat', 'SeuratObject' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/scpoisson/old/scpoisson.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scpoisson/DESCRIPTION’ ... OK -... -* this is package ‘scpoisson’ version ‘0.0.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'Seurat', 'SeuratObject' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# SCpubr - -
- -* Version: 2.0.2 -* GitHub: https://github.com/enblacar/SCpubr -* Source code: https://github.com/cran/SCpubr -* Date/Publication: 2023-10-11 09:50:02 UTC -* Number of recursive dependencies: 306 - -Run `revdepcheck::cloud_details(, "SCpubr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCpubr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘reference_manual.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCpubr/DESCRIPTION’ ... OK +* installing *source* package ‘scpi’ ... +** package ‘scpi’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated +Warning in .recacheSubclasses(def@className, def, env) : ... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘reference_manual.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scpi’ +* removing ‘/tmp/workdir/scpi/new/scpi.Rcheck/scpi’ +``` +### CRAN +``` +* installing *source* package ‘scpi’ ... +** package ‘scpi’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated +Warning in .recacheSubclasses(def@className, def, env) : +... +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scpi’ +* removing ‘/tmp/workdir/scpi/old/scpi.Rcheck/scpi’ ``` @@ -7946,71 +6780,73 @@ Status: 2 NOTEs * GitHub: NA * Source code: https://github.com/cran/scRNAstat * Date/Publication: 2021-09-22 08:10:02 UTC -* Number of recursive dependencies: 155 +* Number of recursive dependencies: 156 Run `revdepcheck::cloud_details(, "scRNAstat")` for more info -## Error before installation +## In both + +* checking whether package ‘scRNAstat’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/00install.out’ for details. + ``` + +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scRNAstat/DESCRIPTION’ ... OK +* installing *source* package ‘scRNAstat’ ... +** package ‘scRNAstat’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘AJ064_small_last_sce’ +Warning: namespace ‘SeuratObject’ is not available and has been replaced +by .GlobalEnv when processing object ‘AJ064_small_last_sce’ ... -* this is package ‘scRNAstat’ version ‘0.1.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +by .GlobalEnv when processing object ‘AJ064_small_last_sce’ +Warning: namespace ‘DBI’ is not available and has been replaced +by .GlobalEnv when processing object ‘AJ064_small_last_sce’ +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scRNAstat’ +* removing ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/scRNAstat’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/scRNAstat/old/scRNAstat.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘scRNAstat/DESCRIPTION’ ... OK +* installing *source* package ‘scRNAstat’ ... +** package ‘scRNAstat’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘AJ064_small_last_sce’ +Warning: namespace ‘SeuratObject’ is not available and has been replaced +by .GlobalEnv when processing object ‘AJ064_small_last_sce’ ... -* this is package ‘scRNAstat’ version ‘0.1.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +by .GlobalEnv when processing object ‘AJ064_small_last_sce’ +Warning: namespace ‘DBI’ is not available and has been replaced +by .GlobalEnv when processing object ‘AJ064_small_last_sce’ +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scRNAstat’ +* removing ‘/tmp/workdir/scRNAstat/old/scRNAstat.Rcheck/scRNAstat’ ``` @@ -8086,7 +6922,7 @@ ERROR: lazy loading failed for package ‘sectorgap’ * GitHub: NA * Source code: https://github.com/cran/SEERaBomb * Date/Publication: 2019-12-12 18:50:03 UTC -* Number of recursive dependencies: 184 +* Number of recursive dependencies: 185 Run `revdepcheck::cloud_details(, "SEERaBomb")` for more info @@ -8160,22 +6996,222 @@ ERROR: lazy loading failed for package ‘SEERaBomb’
-* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/semicmprskcoxmsm -* Date/Publication: 2022-04-29 23:40:02 UTC -* Number of recursive dependencies: 70 +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/semicmprskcoxmsm +* Date/Publication: 2022-04-29 23:40:02 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "semicmprskcoxmsm")` for more info + +
+ +## In both + +* checking whether package ‘semicmprskcoxmsm’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘semicmprskcoxmsm’ ... +** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘semicmprskcoxmsm’ +* removing ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’ + + +``` +### CRAN + +``` +* installing *source* package ‘semicmprskcoxmsm’ ... +** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘semicmprskcoxmsm’ +* removing ‘/tmp/workdir/semicmprskcoxmsm/old/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’ + + +``` +# SensMap + +
+ +* Version: 0.7 +* GitHub: https://github.com/IbtihelRebhi/SensMap +* Source code: https://github.com/cran/SensMap +* Date/Publication: 2022-07-04 19:00:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "SensMap")` for more info + +
+ +## In both + +* checking whether package ‘SensMap’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SensMap’ ... +** package ‘SensMap’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SensMap’ +* removing ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/SensMap’ + + +``` +### CRAN + +``` +* installing *source* package ‘SensMap’ ... +** package ‘SensMap’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SensMap’ +* removing ‘/tmp/workdir/SensMap/old/SensMap.Rcheck/SensMap’ + + +``` +# Seurat + +
+ +* Version: 5.1.0 +* GitHub: https://github.com/satijalab/seurat +* Source code: https://github.com/cran/Seurat +* Date/Publication: 2024-05-10 17:23:17 UTC +* Number of recursive dependencies: 266 + +Run `revdepcheck::cloud_details(, "Seurat")` for more info + +
+ +## In both + +* checking whether package ‘Seurat’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Seurat’ ... +** package ‘Seurat’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘Seurat’ +* removing ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/Seurat’ + + +``` +### CRAN + +``` +* installing *source* package ‘Seurat’ ... +** package ‘Seurat’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘Seurat’ +* removing ‘/tmp/workdir/Seurat/old/Seurat.Rcheck/Seurat’ + + +``` +# shinyTempSignal + +
+ +* Version: 0.0.8 +* GitHub: https://github.com/YuLab-SMU/shinyTempSignal +* Source code: https://github.com/cran/shinyTempSignal +* Date/Publication: 2024-03-06 08:00:02 UTC +* Number of recursive dependencies: 137 -Run `revdepcheck::cloud_details(, "semicmprskcoxmsm")` for more info +Run `revdepcheck::cloud_details(, "shinyTempSignal")` for more info
## In both -* checking whether package ‘semicmprskcoxmsm’ can be installed ... ERROR +* checking whether package ‘shinyTempSignal’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/00install.out’ for details. ``` ## Installation @@ -8183,57 +7219,59 @@ Run `revdepcheck::cloud_details(, "semicmprskcoxmsm")` for more info ### Devel ``` -* installing *source* package ‘semicmprskcoxmsm’ ... -** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked +* installing *source* package ‘shinyTempSignal’ ... +** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘semicmprskcoxmsm’ -* removing ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’ +ERROR: lazy loading failed for package ‘shinyTempSignal’ +* removing ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/shinyTempSignal’ ``` ### CRAN ``` -* installing *source* package ‘semicmprskcoxmsm’ ... -** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked +* installing *source* package ‘shinyTempSignal’ ... +** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘semicmprskcoxmsm’ -* removing ‘/tmp/workdir/semicmprskcoxmsm/old/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’ +ERROR: lazy loading failed for package ‘shinyTempSignal’ +* removing ‘/tmp/workdir/shinyTempSignal/old/shinyTempSignal.Rcheck/shinyTempSignal’ ``` -# SensMap +# sievePH
-* Version: 0.7 -* GitHub: https://github.com/IbtihelRebhi/SensMap -* Source code: https://github.com/cran/SensMap -* Date/Publication: 2022-07-04 19:00:02 UTC -* Number of recursive dependencies: 146 +* Version: 1.1 +* GitHub: https://github.com/mjuraska/sievePH +* Source code: https://github.com/cran/sievePH +* Date/Publication: 2024-05-17 23:40:02 UTC +* Number of recursive dependencies: 72 -Run `revdepcheck::cloud_details(, "SensMap")` for more info +Run `revdepcheck::cloud_details(, "sievePH")` for more info
## In both -* checking whether package ‘SensMap’ can be installed ... ERROR +* checking whether package ‘sievePH’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/sievePH/new/sievePH.Rcheck/00install.out’ for details. ``` ## Installation @@ -8241,40 +7279,46 @@ Run `revdepcheck::cloud_details(, "SensMap")` for more info ### Devel ``` -* installing *source* package ‘SensMap’ ... -** package ‘SensMap’ successfully unpacked and MD5 sums checked +* installing *source* package ‘sievePH’ ... +** package ‘sievePH’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c kernel_sievePH_utils.cpp -o kernel_sievePH_utils.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sievePH.so RcppExports.o kernel_sievePH_utils.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/sievePH/new/sievePH.Rcheck/00LOCK-sievePH/00new/sievePH/libs ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘SensMap’ -* removing ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/SensMap’ +ERROR: lazy loading failed for package ‘sievePH’ +* removing ‘/tmp/workdir/sievePH/new/sievePH.Rcheck/sievePH’ ``` ### CRAN ``` -* installing *source* package ‘SensMap’ ... -** package ‘SensMap’ successfully unpacked and MD5 sums checked +* installing *source* package ‘sievePH’ ... +** package ‘sievePH’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c kernel_sievePH_utils.cpp -o kernel_sievePH_utils.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sievePH.so RcppExports.o kernel_sievePH_utils.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/sievePH/old/sievePH.Rcheck/00LOCK-sievePH/00new/sievePH/libs ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘SensMap’ -* removing ‘/tmp/workdir/SensMap/old/SensMap.Rcheck/SensMap’ +ERROR: lazy loading failed for package ‘sievePH’ +* removing ‘/tmp/workdir/sievePH/old/sievePH.Rcheck/sievePH’ ``` @@ -8286,71 +7330,73 @@ ERROR: lazy loading failed for package ‘SensMap’ * GitHub: https://github.com/stuart-lab/signac * Source code: https://github.com/cran/Signac * Date/Publication: 2024-04-04 02:42:57 UTC -* Number of recursive dependencies: 249 +* Number of recursive dependencies: 250 Run `revdepcheck::cloud_details(, "Signac")` for more info -## Error before installation +## In both + +* checking whether package ‘Signac’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/Signac/new/Signac.Rcheck/00install.out’ for details. + ``` + +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/Signac/new/Signac.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Signac/DESCRIPTION’ ... OK +* installing *source* package ‘Signac’ ... +** package ‘Signac’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c group.cpp -o group.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split.cpp -o split.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c validate.cpp -o validate.o ... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘SeuratObject’ - -Package suggested but not available for checking: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Signac’ +* removing ‘/tmp/workdir/Signac/new/Signac.Rcheck/Signac’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/Signac/old/Signac.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Signac/DESCRIPTION’ ... OK +* installing *source* package ‘Signac’ ... +** package ‘Signac’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c group.cpp -o group.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split.cpp -o split.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c validate.cpp -o validate.o ... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘SeuratObject’ - -Package suggested but not available for checking: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Signac’ +* removing ‘/tmp/workdir/Signac/old/Signac.Rcheck/Signac’ ``` @@ -8362,7 +7408,7 @@ Status: 1 ERROR * GitHub: https://github.com/arcaldwell49/SimplyAgree * Source code: https://github.com/cran/SimplyAgree * Date/Publication: 2024-03-21 14:20:06 UTC -* Number of recursive dependencies: 111 +* Number of recursive dependencies: 115 Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info @@ -8389,6 +7435,11 @@ Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace @@ -8409,6 +7460,11 @@ ERROR: lazy loading failed for package ‘SimplyAgree’ *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace @@ -8550,7 +7606,7 @@ ERROR: lazy loading failed for package ‘SNPassoc’ * GitHub: NA * Source code: https://github.com/cran/snplinkage * Date/Publication: 2023-05-04 08:10:02 UTC -* Number of recursive dependencies: 146 +* Number of recursive dependencies: 145 Run `revdepcheck::cloud_details(, "snplinkage")` for more info @@ -8626,94 +7682,18 @@ Status: 1 ERROR * GitHub: https://github.com/constantAmateur/SoupX * Source code: https://github.com/cran/SoupX * Date/Publication: 2022-11-01 14:00:03 UTC -* Number of recursive dependencies: 200 +* Number of recursive dependencies: 201 Run `revdepcheck::cloud_details(, "SoupX")` for more info -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SoupX/new/SoupX.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SoupX/DESCRIPTION’ ... OK -... -* this is package ‘SoupX’ version ‘1.6.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SoupX/old/SoupX.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SoupX/DESCRIPTION’ ... OK -... -* this is package ‘SoupX’ version ‘1.6.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Seurat’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# SpaDES.core - -
- -* Version: 2.0.5 -* GitHub: https://github.com/PredictiveEcology/SpaDES.core -* Source code: https://github.com/cran/SpaDES.core -* Date/Publication: 2024-04-25 17:20:02 UTC -* Number of recursive dependencies: 136 - -Run `revdepcheck::cloud_details(, "SpaDES.core")` for more info - -
- ## In both -* checking whether package ‘SpaDES.core’ can be installed ... ERROR +* checking whether package ‘SoupX’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/SpaDES.core/new/SpaDES.core.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/SoupX/new/SoupX.Rcheck/00install.out’ for details. ``` ## Installation @@ -8721,38 +7701,40 @@ Run `revdepcheck::cloud_details(, "SpaDES.core")` for more info ### Devel ``` -* installing *source* package ‘SpaDES.core’ ... -** package ‘SpaDES.core’ successfully unpacked and MD5 sums checked +* installing *source* package ‘SoupX’ ... +** package ‘SoupX’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Creating a new generic function for ‘citation’ in package ‘SpaDES.core’ -Error in get(x, envir = ns, inherits = FALSE) : - object '.addingToMemoisedMsg' not found -Error: unable to load R code in package ‘SpaDES.core’ +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘SpaDES.core’ -* removing ‘/tmp/workdir/SpaDES.core/new/SpaDES.core.Rcheck/SpaDES.core’ +ERROR: lazy loading failed for package ‘SoupX’ +* removing ‘/tmp/workdir/SoupX/new/SoupX.Rcheck/SoupX’ ``` ### CRAN ``` -* installing *source* package ‘SpaDES.core’ ... -** package ‘SpaDES.core’ successfully unpacked and MD5 sums checked +* installing *source* package ‘SoupX’ ... +** package ‘SoupX’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Creating a new generic function for ‘citation’ in package ‘SpaDES.core’ -Error in get(x, envir = ns, inherits = FALSE) : - object '.addingToMemoisedMsg' not found -Error: unable to load R code in package ‘SpaDES.core’ +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘SpaDES.core’ -* removing ‘/tmp/workdir/SpaDES.core/old/SpaDES.core.Rcheck/SpaDES.core’ +ERROR: lazy loading failed for package ‘SoupX’ +* removing ‘/tmp/workdir/SoupX/old/SoupX.Rcheck/SoupX’ ``` @@ -8797,112 +7779,36 @@ installing to /tmp/workdir/sparsereg/new/sparsereg.Rcheck/00LOCK-sparsereg/00new ** R ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sparsereg’ -* removing ‘/tmp/workdir/sparsereg/new/sparsereg.Rcheck/sparsereg’ - - -``` -### CRAN - -``` -* installing *source* package ‘sparsereg’ ... -** package ‘sparsereg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makeinter.cpp -o makeinter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makethreeinter.cpp -o makethreeinter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c subgroup.cpp -o subgroup.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sparsereg.so RcppExports.o makeinter.o makethreeinter.o subgroup.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sparsereg/old/sparsereg.Rcheck/00LOCK-sparsereg/00new/sparsereg/libs -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sparsereg’ -* removing ‘/tmp/workdir/sparsereg/old/sparsereg.Rcheck/sparsereg’ - - -``` -# SPECK - -
- -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/SPECK -* Date/Publication: 2023-11-17 17:30:02 UTC -* Number of recursive dependencies: 161 - -Run `revdepcheck::cloud_details(, "SPECK")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SPECK/new/SPECK.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SPECK/DESCRIPTION’ ... OK -... -Package required but not available: ‘Seurat’ - -Package required and available but unsuitable version: ‘Matrix’ - -Package suggested but not available for checking: ‘SeuratObject’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘sparsereg’ +* removing ‘/tmp/workdir/sparsereg/new/sparsereg.Rcheck/sparsereg’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/SPECK/old/SPECK.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SPECK/DESCRIPTION’ ... OK -... -Package required but not available: ‘Seurat’ - -Package required and available but unsuitable version: ‘Matrix’ - -Package suggested but not available for checking: ‘SeuratObject’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +* installing *source* package ‘sparsereg’ ... +** package ‘sparsereg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makeinter.cpp -o makeinter.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makethreeinter.cpp -o makethreeinter.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c subgroup.cpp -o subgroup.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sparsereg.so RcppExports.o makeinter.o makethreeinter.o subgroup.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/sparsereg/old/sparsereg.Rcheck/00LOCK-sparsereg/00new/sparsereg/libs +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘sparsereg’ +* removing ‘/tmp/workdir/sparsereg/old/sparsereg.Rcheck/sparsereg’ ``` @@ -8986,7 +7892,7 @@ ERROR: lazy loading failed for package ‘spikeSlabGAM’ * GitHub: https://github.com/StatsWithR/statsr * Source code: https://github.com/cran/statsr * Date/Publication: 2021-01-22 20:40:03 UTC -* Number of recursive dependencies: 98 +* Number of recursive dependencies: 97 Run `revdepcheck::cloud_details(, "statsr")` for more info @@ -9048,7 +7954,7 @@ ERROR: lazy loading failed for package ‘statsr’ * GitHub: NA * Source code: https://github.com/cran/streamDAG * Date/Publication: 2023-10-06 18:50:02 UTC -* Number of recursive dependencies: 133 +* Number of recursive dependencies: 132 Run `revdepcheck::cloud_details(, "streamDAG")` for more info @@ -9326,7 +8232,7 @@ ERROR: lazy loading failed for package ‘tempted’ * GitHub: https://github.com/YuLab-SMU/tidydr * Source code: https://github.com/cran/tidydr * Date/Publication: 2023-03-08 09:20:02 UTC -* Number of recursive dependencies: 71 +* Number of recursive dependencies: 74 Run `revdepcheck::cloud_details(, "tidydr")` for more info @@ -9388,7 +8294,7 @@ ERROR: lazy loading failed for package ‘tidydr’ * GitHub: NA * Source code: https://github.com/cran/tidyEdSurvey * Date/Publication: 2024-05-14 20:20:03 UTC -* Number of recursive dependencies: 107 +* Number of recursive dependencies: 111 Run `revdepcheck::cloud_details(, "tidyEdSurvey")` for more info @@ -9412,8 +8318,13 @@ Run `revdepcheck::cloud_details(, "tidyEdSurvey")` for more info ** using staged installation ** R ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1.1 is required +Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +In addition: Warning message: +In check_dep_version() : ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Execution halted ERROR: lazy loading failed for package ‘tidyEdSurvey’ * removing ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/tidyEdSurvey’ @@ -9428,8 +8339,13 @@ ERROR: lazy loading failed for package ‘tidyEdSurvey’ ** using staged installation ** R ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1.1 is required +Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +In addition: Warning message: +In check_dep_version() : ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Execution halted ERROR: lazy loading failed for package ‘tidyEdSurvey’ * removing ‘/tmp/workdir/tidyEdSurvey/old/tidyEdSurvey.Rcheck/tidyEdSurvey’ @@ -9444,71 +8360,57 @@ ERROR: lazy loading failed for package ‘tidyEdSurvey’ * GitHub: https://github.com/stemangiola/tidyseurat * Source code: https://github.com/cran/tidyseurat * Date/Publication: 2024-01-10 04:50:02 UTC -* Number of recursive dependencies: 206 +* Number of recursive dependencies: 207 Run `revdepcheck::cloud_details(, "tidyseurat")` for more info -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘tidyseurat/DESCRIPTION’ ... OK -... -* this is package ‘tidyseurat’ version ‘0.8.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'SeuratObject', 'Seurat' +## In both -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR +* checking whether package ‘tidyseurat’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘tidyseurat’ ... +** package ‘tidyseurat’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘tidyseurat’ +* removing ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/tidyseurat’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘tidyseurat/DESCRIPTION’ ... OK -... -* this is package ‘tidyseurat’ version ‘0.8.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'SeuratObject', 'Seurat' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +* installing *source* package ‘tidyseurat’ ... +** package ‘tidyseurat’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘tidyseurat’ +* removing ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck/tidyseurat’ ``` @@ -9575,82 +8477,6 @@ ERROR: lazy loading failed for package ‘tidyvpc’ * removing ‘/tmp/workdir/tidyvpc/old/tidyvpc.Rcheck/tidyvpc’ -``` -# treefit - -
- -* Version: 1.0.2 -* GitHub: https://github.com/hayamizu-lab/treefit-r -* Source code: https://github.com/cran/treefit -* Date/Publication: 2022-01-18 07:50:02 UTC -* Number of recursive dependencies: 159 - -Run `revdepcheck::cloud_details(, "treefit")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/treefit/new/treefit.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘treefit/DESCRIPTION’ ... OK -... - - When sourcing ‘working-with-seurat.R’: -Error: there is no package called ‘Seurat’ -Execution halted - - ‘treefit.Rmd’ using ‘UTF-8’... OK - ‘working-with-seurat.Rmd’ using ‘UTF-8’... failed -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 WARNING, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/treefit/old/treefit.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 - GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 -* running under: Ubuntu 22.04.4 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘treefit/DESCRIPTION’ ... OK -... - - When sourcing ‘working-with-seurat.R’: -Error: there is no package called ‘Seurat’ -Execution halted - - ‘treefit.Rmd’ using ‘UTF-8’... OK - ‘working-with-seurat.Rmd’ using ‘UTF-8’... failed -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 WARNING, 1 NOTE - - - - - ``` # TriDimRegression @@ -9856,26 +8682,26 @@ ERROR: lazy loading failed for package ‘twang’ ``` -# valse +# vdg
-* Version: 0.1-0 +* Version: 1.2.3 * GitHub: NA -* Source code: https://github.com/cran/valse -* Date/Publication: 2021-05-31 08:00:02 UTC -* Number of recursive dependencies: 55 +* Source code: https://github.com/cran/vdg +* Date/Publication: 2024-04-23 13:00:02 UTC +* Number of recursive dependencies: 45 -Run `revdepcheck::cloud_details(, "valse")` for more info +Run `revdepcheck::cloud_details(, "vdg")` for more info
## In both -* checking whether package ‘valse’ can be installed ... ERROR +* checking whether package ‘vdg’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/valse/new/valse.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/vdg/new/vdg.Rcheck/00install.out’ for details. ``` ## Installation @@ -9883,77 +8709,71 @@ Run `revdepcheck::cloud_details(, "valse")` for more info ### Devel ``` -* installing *source* package ‘valse’ ... -** package ‘valse’ successfully unpacked and MD5 sums checked +* installing *source* package ‘vdg’ ... +** package ‘vdg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o -... -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -Error: package or namespace load failed for ‘valse’ in dyn.load(file, DLLpath = DLLpath, ...): - unable to load shared object '/tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so': - /tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_permutation_free -Error: loading failed +using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gfortran -fpic -g -O2 -c FDS.f -o FDS.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o vdg.so FDS.o -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/vdg/new/vdg.Rcheck/00LOCK-vdg/00new/vdg/libs +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: loading failed -* removing ‘/tmp/workdir/valse/new/valse.Rcheck/valse’ +ERROR: lazy loading failed for package ‘vdg’ +* removing ‘/tmp/workdir/vdg/new/vdg.Rcheck/vdg’ ``` ### CRAN ``` -* installing *source* package ‘valse’ ... -** package ‘valse’ successfully unpacked and MD5 sums checked +* installing *source* package ‘vdg’ ... +** package ‘vdg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o -... -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -Error: package or namespace load failed for ‘valse’ in dyn.load(file, DLLpath = DLLpath, ...): - unable to load shared object '/tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so': - /tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_permutation_free -Error: loading failed +using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gfortran -fpic -g -O2 -c FDS.f -o FDS.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o vdg.so FDS.o -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/vdg/old/vdg.Rcheck/00LOCK-vdg/00new/vdg/libs +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: loading failed -* removing ‘/tmp/workdir/valse/old/valse.Rcheck/valse’ +ERROR: lazy loading failed for package ‘vdg’ +* removing ‘/tmp/workdir/vdg/old/vdg.Rcheck/vdg’ ``` -# vdg +# visa
-* Version: 1.2.3 -* GitHub: NA -* Source code: https://github.com/cran/vdg -* Date/Publication: 2024-04-23 13:00:02 UTC -* Number of recursive dependencies: 45 +* Version: 0.1.0 +* GitHub: https://github.com/kang-yu/visa +* Source code: https://github.com/cran/visa +* Date/Publication: 2021-04-20 07:20:02 UTC +* Number of recursive dependencies: 140 -Run `revdepcheck::cloud_details(, "vdg")` for more info +Run `revdepcheck::cloud_details(, "visa")` for more info
## In both -* checking whether package ‘vdg’ can be installed ... ERROR +* checking whether package ‘visa’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/vdg/new/vdg.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/visa/new/visa.Rcheck/00install.out’ for details. ``` ## Installation @@ -9961,48 +8781,40 @@ Run `revdepcheck::cloud_details(, "vdg")` for more info ### Devel ``` -* installing *source* package ‘vdg’ ... -** package ‘vdg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘visa’ ... +** package ‘visa’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gfortran -fpic -g -O2 -c FDS.f -o FDS.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o vdg.so FDS.o -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/vdg/new/vdg.Rcheck/00LOCK-vdg/00new/vdg/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘vdg’ -* removing ‘/tmp/workdir/vdg/new/vdg.Rcheck/vdg’ +ERROR: lazy loading failed for package ‘visa’ +* removing ‘/tmp/workdir/visa/new/visa.Rcheck/visa’ ``` ### CRAN ``` -* installing *source* package ‘vdg’ ... -** package ‘vdg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘visa’ ... +** package ‘visa’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gfortran -fpic -g -O2 -c FDS.f -o FDS.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o vdg.so FDS.o -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/vdg/old/vdg.Rcheck/00LOCK-vdg/00new/vdg/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘vdg’ -* removing ‘/tmp/workdir/vdg/old/vdg.Rcheck/vdg’ +ERROR: lazy loading failed for package ‘visa’ +* removing ‘/tmp/workdir/visa/old/visa.Rcheck/visa’ ``` @@ -10014,7 +8826,7 @@ ERROR: lazy loading failed for package ‘vdg’ * GitHub: https://github.com/fawda123/WRTDStidal * Source code: https://github.com/cran/WRTDStidal * Date/Publication: 2023-10-20 09:00:11 UTC -* Number of recursive dependencies: 140 +* Number of recursive dependencies: 139 Run `revdepcheck::cloud_details(, "WRTDStidal")` for more info diff --git a/revdep/problems.md b/revdep/problems.md index 1280d2fbbb..8e2e437056 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,2640 +1,1317 @@ -# asmbPLS +# activAnalyzer (patchwork) -
+# actxps (thematic) -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/asmbPLS -* Date/Publication: 2023-04-17 09:50:05 UTC -* Number of recursive dependencies: 100 +# AeRobiology (unknown) -Run `revdepcheck::cloud_details(, "asmbPLS")` for more info +``` +#
+# +# * Version: 2.0.1 +# * GitHub: NA +# * Source code: https://github.com/cran/AeRobiology +# * Date/Publication: 2019-06-03 06:20:03 UTC +# * Number of recursive dependencies: 98 +# +# Run `revdepcheck::cloud_details(, "AeRobiology")` for more info +# +#
+# +# ## Newly broken +# +# * checking re-building of vignette outputs ... NOTE +# ``` +# Error(s) in re-building vignettes: +# --- re-building ‘my-vignette.Rmd’ using rmarkdown +# ``` +# +# ## In both +# +# * checking running R code from vignettes ... ERROR +# ``` +# Errors in running code in vignettes: +# when running code in ‘my-vignette.Rmd’ +# ... +# + export.plot = FALSE, export.result = FALSE, n.types = 3, +# + y.start = 2011, y.end = .... [TRUNCATED] +# +# > iplot_abundance(munich_pollen, interpolation = FALSE, +# + export.plot = FALSE, export.result = FALSE, n.types = 3, +# + y.start = 2011, y.end = .... [TRUNCATED] +# +# When sourcing ‘my-vignette.R’: +# Error: subscript out of bounds +# Execution halted +# +# ‘my-vignette.Rmd’ using ‘UTF-8’... failed +# ``` +``` -
+# agricolaeplotr (missing labels) -## Newly broken +# AnalysisLin (plotly) -* checking whether package ‘asmbPLS’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘asmbPLS’ - See ‘/tmp/workdir/asmbPLS/new/asmbPLS.Rcheck/00install.out’ for details. - ``` +# animbook (plotly) -## In both - -* checking installed package size ... NOTE - ``` - installed size is 19.7Mb - sub-directories of 1Mb or more: - data 2.1Mb - libs 16.5Mb - ``` - -# bdl - -
- -* Version: 1.0.5 -* GitHub: https://github.com/statisticspoland/R_Package_to_API_BDL -* Source code: https://github.com/cran/bdl -* Date/Publication: 2023-02-24 15:00:02 UTC -* Number of recursive dependencies: 144 - -Run `revdepcheck::cloud_details(, "bdl")` for more info - -
- -## Newly broken - -* checking whether package ‘bdl’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘bdl’ - See ‘/tmp/workdir/bdl/new/bdl.Rcheck/00install.out’ for details. - ``` - -# bdscale - -
- -* Version: 2.0.0 -* GitHub: https://github.com/dvmlls/bdscale -* Source code: https://github.com/cran/bdscale -* Date/Publication: 2016-03-17 13:27:37 -* Number of recursive dependencies: 63 - -Run `revdepcheck::cloud_details(, "bdscale")` for more info - -
- -## Newly broken - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘bdscale.Rmd’ - ... - > options <- as.Date(c("2014-08-15", "2014-09-19")) - - > plot + geom_vline(xintercept = as.numeric(options), - + size = 2, alpha = 0.25) + ggtitle("calendar dates, option expiry") - Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. - ℹ Please use `linewidth` instead. - - When sourcing ‘bdscale.R’: - Error: `transform_date()` works with objects of class only - Execution halted - - ‘bdscale.Rmd’... failed - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘bdscale.Rmd’ using rmarkdown - ``` - -# biclustermd - -
- -* Version: 0.2.3 -* GitHub: https://github.com/jreisner/biclustermd -* Source code: https://github.com/cran/biclustermd -* Date/Publication: 2021-06-17 15:10:06 UTC -* Number of recursive dependencies: 84 - -Run `revdepcheck::cloud_details(, "biclustermd")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(biclustermd) - Loading required package: ggplot2 - Loading required package: tidyr - - Attaching package: 'tidyr' - - ... - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 67 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-autoplot_biclustermd.R:6:3'): autoplot_biclustermd() correctly plots cluster lines ── - ap$data[[3]]$xintercept[-1] not equal to cumsum(colSums(sbc$P)) + 0.5. - Classes differ: 'mapped_discrete'/'numeric' is not 'numeric' - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 67 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘nycflights13’ - All declared Imports should be used. - ``` - -# brolgar - -
- -* Version: 1.0.1 -* GitHub: https://github.com/njtierney/brolgar -* Source code: https://github.com/cran/brolgar -* Date/Publication: 2024-05-10 14:50:34 UTC -* Number of recursive dependencies: 101 - -Run `revdepcheck::cloud_details(, "brolgar")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘brolgar-Ex.R’ failed - The error most likely occurred in: - - > ### Name: facet_sample - > ### Title: Facet data into groups to facilitate exploration - > ### Aliases: facet_sample - > - > ### ** Examples - > - > library(ggplot2) - > ggplot(heights, - + aes(x = year, - + y = height_cm, - + group = country)) + - + geom_line() + - + facet_sample() - Error in if (params$as.table) { : argument is of length zero - Calls: ... -> setup -> -> compute_layout - Execution halted - ``` - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘getting-started.Rmd’ - ... - > set.seed(2019 - 7 - 23 - 1936) - - > library(ggplot2) - - > ggplot(wages, aes(x = xp, y = ln_wages, group = id)) + - + geom_line() + facet_strata() - - ... - Error: argument is of length zero - Execution halted - - ‘exploratory-modelling.Rmd’ using ‘UTF-8’... OK - ‘finding-features.Rmd’ using ‘UTF-8’... OK - ‘getting-started.Rmd’ using ‘UTF-8’... failed - ‘id-interesting-obs.Rmd’ using ‘UTF-8’... OK - ‘longitudinal-data-structures.Rmd’ using ‘UTF-8’... OK - ‘mixed-effects-models.Rmd’ using ‘UTF-8’... failed - ‘visualisation-gallery.Rmd’ using ‘UTF-8’... failed - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘exploratory-modelling.Rmd’ using rmarkdown - ``` - -# bSi - -
- -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/bSi -* Date/Publication: 2024-01-24 15:52:57 UTC -* Number of recursive dependencies: 99 - -Run `revdepcheck::cloud_details(, "bSi")` for more info - -
- -## Newly broken - -* checking whether package ‘bSi’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘bSi’ - See ‘/tmp/workdir/bSi/new/bSi.Rcheck/00install.out’ for details. - ``` - -# CausalImpact - -
- -* Version: 1.3.0 -* GitHub: NA -* Source code: https://github.com/cran/CausalImpact -* Date/Publication: 2022-11-09 08:40:40 UTC -* Number of recursive dependencies: 77 - -Run `revdepcheck::cloud_details(, "CausalImpact")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘CausalImpact_import_test.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # Copyright 2014-2022 Google Inc. All rights reserved. - > # - > # Licensed under the Apache License, Version 2.0 (the "License"); - > # you may not use this file except in compliance with the License. - > # You may obtain a copy of the License at - > # - ... - 20. └─base::lapply(df[aesthetics], self$transform) - 21. └─ggplot2 (local) FUN(X[[i]], ...) - 22. └─ggplot2 (local) transform(..., self = self) - 23. └─transformation$transform(x) - 24. └─cli::cli_abort("{.fun transform_date} works with objects of class {.cls Date} only") - 25. └─rlang::abort(...) - - [ FAIL 2 | WARN 1 | SKIP 0 | PASS 739 ] - Error: Test failures - Execution halted - ``` - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘CausalImpact.Rmd’ - ... - - > impact <- CausalImpact(data, pre.period, post.period) - - > q <- plot(impact) + theme_bw(base_size = 11) - - > suppressWarnings(plot(q)) - - When sourcing ‘CausalImpact.R’: - Error: `transform_date()` works with objects of class only - Execution halted - - ‘CausalImpact.Rmd’ using ‘UTF-8’... failed - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘CausalImpact.Rmd’ using rmarkdown - ``` - -# ClusROC - -
- -* Version: 1.0.2 -* GitHub: https://github.com/toduckhanh/ClusROC -* Source code: https://github.com/cran/ClusROC -* Date/Publication: 2022-11-17 15:00:02 UTC -* Number of recursive dependencies: 107 - -Run `revdepcheck::cloud_details(, "ClusROC")` for more info - -
- -## Newly broken - -* checking whether package ‘ClusROC’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘ClusROC’ - See ‘/tmp/workdir/ClusROC/new/ClusROC.Rcheck/00install.out’ for details. - ``` - -# clustEff - -
- -* Version: 0.3.1 -* GitHub: NA -* Source code: https://github.com/cran/clustEff -* Date/Publication: 2024-01-23 08:52:55 UTC -* Number of recursive dependencies: 136 - -Run `revdepcheck::cloud_details(, "clustEff")` for more info - -
- -## Newly broken - -* checking whether package ‘clustEff’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘clustEff’ - See ‘/tmp/workdir/clustEff/new/clustEff.Rcheck/00install.out’ for details. - ``` - -# CLVTools - -
- -* Version: 0.10.0 -* GitHub: https://github.com/bachmannpatrick/CLVTools -* Source code: https://github.com/cran/CLVTools -* Date/Publication: 2023-10-23 20:10:02 UTC -* Number of recursive dependencies: 85 - -Run `revdepcheck::cloud_details(, "CLVTools")` for more info - -
- -## Newly broken - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘CLVTools.Rmd’ - ... - 248: 39.95483 2.336902 - 249: 34.28958 38.969738 - 250: 47.35500 7.284870 - - > plot(clv.apparel) - Plotting from 2005-01-03 until 2006-07-16. - - When sourcing ‘CLVTools.R’: - Error: `transform_date()` works with objects of class only - Execution halted - - ‘CLVTools.Rmd’ using ‘UTF-8’... failed - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘CLVTools.Rmd’ using rmarkdown - - Quitting from lines 270-272 [plot-actual] (CLVTools.Rmd) - Error: processing vignette 'CLVTools.Rmd' failed with diagnostics: - `transform_date()` works with objects of class only - --- failed re-building ‘CLVTools.Rmd’ - - SUMMARY: processing the following file failed: - ‘CLVTools.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 17.4Mb - sub-directories of 1Mb or more: - libs 15.5Mb - ``` - -# coda4microbiome - -
- -* Version: 0.2.3 -* GitHub: https://github.com/malucalle/coda4microbiome -* Source code: https://github.com/cran/coda4microbiome -* Date/Publication: 2024-02-21 08:30:06 UTC -* Number of recursive dependencies: 136 - -Run `revdepcheck::cloud_details(, "coda4microbiome")` for more info - -
- -## Newly broken - -* checking whether package ‘coda4microbiome’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘coda4microbiome’ - See ‘/tmp/workdir/coda4microbiome/new/coda4microbiome.Rcheck/00install.out’ for details. - ``` - -# CompAREdesign - -
- -* Version: 2.3.1 -* GitHub: NA -* Source code: https://github.com/cran/CompAREdesign -* Date/Publication: 2024-02-15 13:00:02 UTC -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "CompAREdesign")` for more info - -
- -## Newly broken - -* checking whether package ‘CompAREdesign’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘CompAREdesign’ - See ‘/tmp/workdir/CompAREdesign/new/CompAREdesign.Rcheck/00install.out’ for details. - ``` - -# covidcast - -
- -* Version: 0.5.2 -* GitHub: https://github.com/cmu-delphi/covidcast -* Source code: https://github.com/cran/covidcast -* Date/Publication: 2023-07-12 23:40:06 UTC -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "covidcast")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(covidcast) - We encourage COVIDcast API users to register on our mailing list: - https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api - We'll send announcements about new data sources, package updates, - server maintenance, and new features. - > - ... - • plot/default-county-choropleth.svg - • plot/default-hrr-choropleth-with-include.svg - • plot/default-msa-choropleth-with-include.svg - • plot/default-state-choropleth-with-include.svg - • plot/default-state-choropleth-with-range.svg - • plot/state-choropleth-with-no-metadata.svg - • plot/state-line-graph-with-range.svg - • plot/state-line-graph-with-stderrs.svg - Error: Test failures - Execution halted - ``` - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘plotting-signals.Rmd’ - ... - > plot(inum, choro_col = colors, choro_params = list(breaks = breaks), - + title = "New COVID cases (7-day trailing average) on 2020-07-14") - - When sourcing ‘plotting-signals.R’: - Error: Problem while setting up geom aesthetics. - ℹ Error occurred in the 5th layer. - Caused by error in `check_aesthetics()`: - ! Aesthetics must be either length 1 or the same as the data (3078). - ✖ Fix the following mappings: `fill`. - Execution halted - - ‘correlation-utils.Rmd’ using ‘UTF-8’... OK - ‘covidcast.Rmd’ using ‘UTF-8’... OK - ‘external-data.Rmd’ using ‘UTF-8’... OK - ‘multi-signals.Rmd’ using ‘UTF-8’... OK - ‘plotting-signals.Rmd’ using ‘UTF-8’... failed - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘correlation-utils.Rmd’ using rmarkdown - --- finished re-building ‘correlation-utils.Rmd’ - - --- re-building ‘covidcast.Rmd’ using rmarkdown - ``` - -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 20 marked UTF-8 strings - ``` - -# Coxmos - -
- -* Version: 1.0.2 -* GitHub: https://github.com/BiostatOmics/Coxmos -* Source code: https://github.com/cran/Coxmos -* Date/Publication: 2024-03-25 20:32:38 UTC -* Number of recursive dependencies: 204 - -Run `revdepcheck::cloud_details(, "Coxmos")` for more info - -
- -## Newly broken - -* checking Rd files ... WARNING - ``` - prepare_Rd: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘survminer’ - ``` - -## In both - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘Coxmos-pipeline.Rmd’ - ... - Warning in data("X_proteomic") : data set ‘X_proteomic’ not found - - > data("Y_proteomic") - Warning in data("Y_proteomic") : data set ‘Y_proteomic’ not found - - > X <- X_proteomic - - When sourcing ‘Coxmos-pipeline.R’: - Error: object 'X_proteomic' not found - Execution halted - - ‘Coxmos-MO-pipeline.Rmd’ using ‘UTF-8’... OK - ‘Coxmos-pipeline.Rmd’ using ‘UTF-8’... failed - ``` - -* checking installed package size ... NOTE - ``` - installed size is 6.5Mb - sub-directories of 1Mb or more: - data 2.1Mb - doc 2.9Mb - ``` - -# csa - -
- -* Version: 0.7.1 -* GitHub: https://github.com/imarkonis/csa -* Source code: https://github.com/cran/csa -* Date/Publication: 2023-10-24 13:40:11 UTC -* Number of recursive dependencies: 95 - -Run `revdepcheck::cloud_details(, "csa")` for more info - -
- -## Newly broken - -* checking whether package ‘csa’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘csa’ - See ‘/tmp/workdir/csa/new/csa.Rcheck/00install.out’ for details. - ``` - -# deeptime - -
- -* Version: 1.1.1 -* GitHub: https://github.com/willgearty/deeptime -* Source code: https://github.com/cran/deeptime -* Date/Publication: 2024-03-08 17:10:10 UTC -* Number of recursive dependencies: 181 - -Run `revdepcheck::cloud_details(, "deeptime")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘deeptime-Ex.R’ failed - The error most likely occurred in: - - > ### Name: facet_wrap_color - > ### Title: Wrap a 1d ribbon of panels into 2d with colored strips - > ### Aliases: facet_wrap_color FacetWrapColor - > ### Keywords: datasets - > - > ### ** Examples - > - ... - 6. │ └─ggplot2 (local) setup(..., self = self) - 7. │ └─self$facet$compute_layout(data, self$facet_params) - 8. │ └─ggplot2 (local) compute_layout(..., self = self) - 9. │ └─ggplot2:::wrap_layout(id, dims, params$dir) - 10. │ └─ggplot2:::data_frame0(...) - 11. │ └─vctrs::data_frame(..., .name_repair = "minimal") - 12. └─vctrs:::stop_recycle_incompatible_size(...) - 13. └─vctrs:::stop_vctrs(...) - 14. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(deeptime) - > - > test_check("deeptime") - Scale for y is already present. - Adding another scale for y, which will replace the existing scale. - Scale for y is already present. - ... - • gggeo_scale/gggeo-scale-top-new.svg - • gggeo_scale/gggeo-scale-top-old.svg - • points_range/geom-points-range-aes-new.svg - • points_range/geom-points-range-aes-old.svg - • points_range/geom-points-range-bg-new.svg - • points_range/geom-points-range-bg-old.svg - • points_range/geom-points-range-h-new.svg - • points_range/geom-points-range-h-old.svg - Error: Test failures - Execution halted - ``` - -# DEGRE - -
- -* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/DEGRE -* Date/Publication: 2022-11-02 09:32:57 UTC -* Number of recursive dependencies: 89 - -Run `revdepcheck::cloud_details(, "DEGRE")` for more info - -
- -## Newly broken - -* checking whether package ‘DEGRE’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘DEGRE’ - See ‘/tmp/workdir/DEGRE/new/DEGRE.Rcheck/00install.out’ for details. - ``` - -# did - -
- -* Version: 2.1.2 -* GitHub: https://github.com/bcallaway11/did -* Source code: https://github.com/cran/did -* Date/Publication: 2022-07-20 16:00:05 UTC -* Number of recursive dependencies: 125 - -Run `revdepcheck::cloud_details(, "did")` for more info - -
- -## Newly broken - -* checking whether package ‘did’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘did’ - See ‘/tmp/workdir/did/new/did.Rcheck/00install.out’ for details. - ``` - -## In both - -* checking running R code from vignettes ... WARNING - ``` - Errors in running code in vignettes: - when running code in ‘TWFE.Rmd’ - ... - - > knitr::opts_chunk$set(collapse = TRUE, comment = "#>", - + echo = TRUE, eval = FALSE) - - > library(tidyverse) - - When sourcing ‘TWFE.R’: - ... - - When sourcing ‘pre-testing.R’: - Error: cannot open the connection - Execution halted - - ‘TWFE.Rmd’ using ‘UTF-8’... failed - ‘did-basics.Rmd’ using ‘UTF-8’... OK - ‘extensions.Rmd’ using ‘UTF-8’... failed - ‘multi-period-did.Rmd’ using ‘UTF-8’... OK - ‘pre-testing.Rmd’ using ‘UTF-8’... failed - ``` - -# EpiCurve - -
- -* Version: 2.4-2 -* GitHub: https://github.com/IamKDO/EpiCurve -* Source code: https://github.com/cran/EpiCurve -* Date/Publication: 2021-07-14 16:20:05 UTC -* Number of recursive dependencies: 56 - -Run `revdepcheck::cloud_details(, "EpiCurve")` for more info - -
- -## Newly broken - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘EpiCurve.Rmd’ - ... - |2016-11-06 | 6.60| 116| - |2016-11-07 | 7.68| 141| - |2016-11-07 | 10.08| 126| - - > EpiCurve(DF, date = "UTS", period = "day", colors = "#9900ef", - + xlabel = sprintf("From %s to %s", min(DF$UTS), max(DF$UTS))) - - When sourcing ‘EpiCurve.R’: - Error: `transform_date()` works with objects of class only - Execution halted - - ‘EpiCurve.Rmd’ using ‘UTF-8’... failed - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘EpiCurve.Rmd’ using rmarkdown - - Quitting from lines 103-106 [unnamed-chunk-3] (EpiCurve.Rmd) - Error: processing vignette 'EpiCurve.Rmd' failed with diagnostics: - `transform_date()` works with objects of class only - --- failed re-building ‘EpiCurve.Rmd’ - - SUMMARY: processing the following file failed: - ‘EpiCurve.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘tibble’ - All declared Imports should be used. - ``` - -# epiR - -
- -* Version: 2.0.74 -* GitHub: NA -* Source code: https://github.com/cran/epiR -* Date/Publication: 2024-04-27 12:30:02 UTC -* Number of recursive dependencies: 125 - -Run `revdepcheck::cloud_details(, "epiR")` for more info - -
- -## Newly broken - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘epiR_descriptive.Rmd’ - ... - + geom_histogram(binwidth = 7, colour = "gray", fill = "dark blue", - + li .... [TRUNCATED] - - > ggplot(data = dat.df, aes(x = as.Date(odate))) + theme_bw() + - + geom_histogram(binwidth = 7, colour = "gray", fill = "dark blue", - + li .... [TRUNCATED] - - When sourcing ‘epiR_descriptive.R’: - Error: `transform_date()` works with objects of class only - Execution halted - - ‘epiR_descriptive.Rmd’... failed - ‘epiR_measures_of_association.Rmd’... OK - ‘epiR_sample_size.Rmd’... OK - ‘epiR_surveillance.Rmd’... OK - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘epiR_descriptive.Rmd’ using rmarkdown - ``` - -# FuncNN - -
- -* Version: 1.0 -* GitHub: https://github.com/b-thi/FuncNN -* Source code: https://github.com/cran/FuncNN -* Date/Publication: 2020-09-15 09:40:15 UTC -* Number of recursive dependencies: 170 - -Run `revdepcheck::cloud_details(, "FuncNN")` for more info - -
- -## Newly broken - -* checking whether package ‘FuncNN’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘FuncNN’ - See ‘/tmp/workdir/FuncNN/new/FuncNN.Rcheck/00install.out’ for details. - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘foreach’ - All declared Imports should be used. - ``` - -# geostan - -
- -* Version: 0.6.1 -* GitHub: https://github.com/ConnorDonegan/geostan -* Source code: https://github.com/cran/geostan -* Date/Publication: 2024-05-10 22:23:01 UTC -* Number of recursive dependencies: 108 - -Run `revdepcheck::cloud_details(, "geostan")` for more info - -
+# ANN2 (missing labels) -## Newly broken +# aplot (patchwork) -* checking whether package ‘geostan’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/geostan/new/geostan.Rcheck/00install.out’ for details. - ``` +# applicable (missing labels) -## Newly fixed +# ASRgenomics (factoextra) -* checking installed package size ... NOTE - ``` - installed size is 129.8Mb - sub-directories of 1Mb or more: - libs 127.6Mb - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘RcppParallel’ ‘rstantools’ - All declared Imports should be used. - ``` - -* checking for GNU extensions in Makefiles ... NOTE - ``` - GNU make is a SystemRequirements. - ``` - -## Installation - -### Devel +# autoplotly (plotly) -``` -* installing *source* package ‘geostan’ ... -** package ‘geostan’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -stanExports_foundation.cc:32:1: fatal error: error writing to /tmp/cccy6wQ6.s: Cannot allocate memory - 32 | } - | ^ -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_foundation.o] Error 1 -ERROR: compilation failed for package ‘geostan’ -* removing ‘/tmp/workdir/geostan/new/geostan.Rcheck/geostan’ +# autoReg (patchwork) + +# bartMan (ggnewscale) + +# bayesAB (missing labels) + +# BayesGrowth (ggdist) + +# BayesianReasoning (missing labels) + +# BayesMallows (missing labels) + +# bayesplot (missing labels) + +# bayestestR (patchwork) + +# beastt (ggdist) +# besthr (patchwork) +# biclustermd (xintercept/yintercept class) + +# biodosetools (missing labels) + +# boxly (plotly) + +# braidReports (annotation_logticks) + +# breathtestcore (plot slots) + +# brolgar (facet params: as.table) + +# cartograflow (plotly) + +# cartographr (unknown) + +``` +#
+# +# * Version: 0.2.2 +# * GitHub: https://github.com/da-wi/cartographr +# * Source code: https://github.com/cran/cartographr +# * Date/Publication: 2024-06-28 14:50:09 UTC +# * Number of recursive dependencies: 99 +# +# Run `revdepcheck::cloud_details(, "cartographr")` for more info +# +#
+# +# ## Newly broken +# +# * checking tests ... ERROR +# ``` +# Running ‘testthat.R’ +# Running the tests in ‘tests/testthat.R’ failed. +# Complete output: +# > # This file is part of the standard setup for testthat. +# > # It is recommended that you do not modify it. +# > # +# > # Where should you do additional test configuration? +# > # Learn more about the roles of various files in: +# > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview +# > # * https://testthat.r-lib.org/articles/special-files.html +# ... +# 21. │ └─base::stop(...) +# 22. └─base::.handleSimpleError(...) +# 23. └─rlang (local) h(simpleError(msg, call)) +# 24. └─handlers[[1L]](cnd) +# 25. └─cli::cli_abort(...) +# 26. └─rlang::abort(...) +# +# [ FAIL 1 | WARN 0 | SKIP 0 | PASS 106 ] +# Error: Test failures +# Execution halted +# ``` +# +# ## In both +# +# * checking installed package size ... NOTE +# ``` +# installed size is 5.3Mb +# sub-directories of 1Mb or more: +# data 3.5Mb +# ``` ``` -### CRAN +# cats (plotly) + +# cheem (plotly) + +# chillR (patchwork) + +# chronicle (plotly) + +# circhelp (patchwork) + +# clifro (missing labels) + +# clinDataReview (plotly) + +# clinUtils (plotly) + +# CohortPlat (plotly) + +# CoreMicrobiomeR (plotly) + +# correlationfunnel (plotly) + +# corrViz (plotly) + +# countfitteR (missing labels) + +# covidcast (unknown) + +``` +#
+# +# * Version: 0.5.2 +# * GitHub: https://github.com/cmu-delphi/covidcast +# * Source code: https://github.com/cran/covidcast +# * Date/Publication: 2023-07-12 23:40:06 UTC +# * Number of recursive dependencies: 93 +# +# Run `revdepcheck::cloud_details(, "covidcast")` for more info +# +#
+# +# ## Newly broken +# +# * checking tests ... ERROR +# ``` +# Running ‘testthat.R’ +# Running the tests in ‘tests/testthat.R’ failed. +# Complete output: +# > library(testthat) +# > library(covidcast) +# We encourage COVIDcast API users to register on our mailing list: +# https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api +# We'll send announcements about new data sources, package updates, +# server maintenance, and new features. +# > +# ... +# • plot/default-county-choropleth.svg +# • plot/default-hrr-choropleth-with-include.svg +# • plot/default-msa-choropleth-with-include.svg +# • plot/default-state-choropleth-with-include.svg +# • plot/default-state-choropleth-with-range.svg +# • plot/state-choropleth-with-no-metadata.svg +# • plot/state-line-graph-with-range.svg +# • plot/state-line-graph-with-stderrs.svg +# Error: Test failures +# Execution halted +# ``` +# +# * checking running R code from vignettes ... ERROR +# ``` +# Errors in running code in vignettes: +# when running code in ‘plotting-signals.Rmd’ +# ... +# > knitr::opts_chunk$set(fig.width = 6, fig.height = 4) +# +# > plot(dv) +# +# When sourcing ‘plotting-signals.R’: +# Error: Problem while setting up geom aesthetics. +# ℹ Error occurred in the 6th layer. +# Caused by error in `$<-.data.frame`: +# ! replacement has 1 row, data has 0 +# Execution halted +# +# ‘correlation-utils.Rmd’ using ‘UTF-8’... OK +# ‘covidcast.Rmd’ using ‘UTF-8’... OK +# ‘external-data.Rmd’ using ‘UTF-8’... OK +# ‘multi-signals.Rmd’ using ‘UTF-8’... OK +# ‘plotting-signals.Rmd’ using ‘UTF-8’... failed +# ``` +# +# * checking re-building of vignette outputs ... NOTE +# ``` +# Error(s) in re-building vignettes: +# --- re-building ‘correlation-utils.Rmd’ using rmarkdown +# --- finished re-building ‘correlation-utils.Rmd’ +# +# --- re-building ‘covidcast.Rmd’ using rmarkdown +# ``` +# +# ## In both +# +# * checking data for non-ASCII characters ... NOTE +# ``` +# Note: found 20 marked UTF-8 strings +# ``` ``` -* installing *source* package ‘geostan’ ... -** package ‘geostan’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -** help -*** installing help indices -*** copying figures -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** checking absolute paths in shared objects and dynamic libraries -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (geostan) +# crosshap (plotly) + +# cubble (patchwork) + +# deeptime (ggnewscale) + +# distributional (ggdist) + +# dittoViz (plotly) + +# EGM (missing labels) + +# entropart (default access) + +# epiCleanr (ggdist) + +# esci (ggdist) +# evalITR (unknown) + +``` +#
+# +# * Version: 1.0.0 +# * GitHub: https://github.com/MichaelLLi/evalITR +# * Source code: https://github.com/cran/evalITR +# * Date/Publication: 2023-08-25 23:10:06 UTC +# * Number of recursive dependencies: 167 +# +# Run `revdepcheck::cloud_details(, "evalITR")` for more info +# +#
+# +# ## Newly broken +# +# * checking re-building of vignette outputs ... NOTE +# ``` +# Error(s) in re-building vignettes: +# --- re-building ‘cv_multiple_alg.Rmd’ using rmarkdown +# ``` +# +# ## In both +# +# * checking running R code from vignettes ... ERROR +# ``` +# Errors in running code in vignettes: +# when running code in ‘cv_multiple_alg.Rmd’ +# ... +# intersect, setdiff, setequal, union +# +# +# > load("../data/star.rda") +# Warning in readChar(con, 5L, useBytes = TRUE) : +# cannot open compressed file '../data/star.rda', probable reason 'No such file or directory' +# +# ... +# Execution halted +# +# ‘cv_multiple_alg.Rmd’ using ‘UTF-8’... failed +# ‘cv_single_alg.Rmd’ using ‘UTF-8’... failed +# ‘install.Rmd’ using ‘UTF-8’... OK +# ‘paper_alg1.Rmd’ using ‘UTF-8’... OK +# ‘sample_split.Rmd’ using ‘UTF-8’... failed +# ‘sample_split_caret.Rmd’ using ‘UTF-8’... failed +# ‘user_itr.Rmd’ using ‘UTF-8’... failed +# ‘user_itr_algs.Rmd’ using ‘UTF-8’... failed +# ``` +# +# * checking dependencies in R code ... NOTE +# ``` +# Namespaces in Imports field not imported from: +# ‘forcats’ ‘rqPen’ ‘utils’ +# All declared Imports should be used. +# ``` ``` -# ggedit - -
- -* Version: 0.4.1 -* GitHub: https://github.com/yonicd/ggedit -* Source code: https://github.com/cran/ggedit -* Date/Publication: 2024-03-04 14:40:02 UTC -* Number of recursive dependencies: 95 - -Run `revdepcheck::cloud_details(, "ggedit")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘ggedit-Ex.R’ failed - The error most likely occurred in: - - > ### Name: print.ggedit - > ### Title: Print ggedit objects - > ### Aliases: print.ggedit - > - > ### ** Examples - > - > p <- as.gglist(pList[1:2]) - ... - 8. │ └─ggplot2 (local) setup(..., self = self) - 9. │ └─self$facet$compute_layout(data, self$facet_params) - 10. │ └─ggplot2 (local) compute_layout(..., self = self) - 11. │ └─ggplot2:::wrap_layout(id, dims, params$dir) - 12. │ └─ggplot2:::data_frame0(...) - 13. │ └─vctrs::data_frame(..., .name_repair = "minimal") - 14. └─vctrs:::stop_recycle_incompatible_size(...) - 15. └─vctrs:::stop_vctrs(...) - 16. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) - Execution halted - ``` - -# ggfixest - -
- -* Version: 0.1.0 -* GitHub: https://github.com/grantmcdermott/ggfixest -* Source code: https://github.com/cran/ggfixest -* Date/Publication: 2023-12-14 08:00:06 UTC -* Number of recursive dependencies: 78 - -Run `revdepcheck::cloud_details(, "ggfixest")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘tinytest.R’ - Running the tests in ‘tests/tinytest.R’ failed. - Complete output: - > ## Throttle CPU threads if R CMD check (for CRAN) - > - > if (any(grepl("_R_CHECK", names(Sys.getenv()), fixed = TRUE))) { - + # fixest - + if (requireNamespace("fixest", quietly = TRUE)) { - + library(fixest) - + setFixest_nthreads(1) - ... - ----- FAILED[]: test_ggcoefplot.R<66--66> - call| expect_snapshot_plot(p_did_iid_summ, label = "ggcoefplot_did_iid") - diff| 7580 - info| Diff plot saved to: _tinysnapshot_review/ggcoefplot_did_iid.png - ----- FAILED[]: test_ggcoefplot.R<67--67> - call| expect_snapshot_plot(p_did_iid, label = "ggcoefplot_did_iid") - diff| 7580 - info| Diff plot saved to: _tinysnapshot_review/ggcoefplot_did_iid.png - Error: 12 out of 101 tests failed - Execution halted - ``` - -## In both - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘ggiplot.Rmd’ - ... - > iplot(list(TWFE = est_twfe_grp, `Sun & Abraham (2020)` = est_sa20_grp), - + ref.line = -1, main = "Staggered treatment: Split mutli-sample") - The degrees of freedom for the t distribution could not be deduced. Using a Normal distribution instead. - Note that you can provide the argument `df.t` directly. - - When sourcing ‘ggiplot.R’: - Error: in iplot(list(TWFE = est_twfe_grp, `Sun & Abraham (2...: - The 1st element of 'object' raises and error: - Error in nb * sd : non-numeric argument to binary operator - Execution halted - - ‘ggiplot.Rmd’ using ‘UTF-8’... failed - ``` - -# ggfortify - -
- -* Version: 0.4.17 -* GitHub: https://github.com/sinhrks/ggfortify -* Source code: https://github.com/cran/ggfortify -* Date/Publication: 2024-04-17 04:30:04 UTC -* Number of recursive dependencies: 125 - -Run `revdepcheck::cloud_details(, "ggfortify")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘basics.Rmd’ using knitr - - Attaching package: 'zoo' - - The following objects are masked from 'package:base': - - as.Date, as.Date.numeric - ``` - -# ggh4x - -
- -* Version: 0.2.8 -* GitHub: https://github.com/teunbrand/ggh4x -* Source code: https://github.com/cran/ggh4x -* Date/Publication: 2024-01-23 21:00:02 UTC -* Number of recursive dependencies: 77 - -Run `revdepcheck::cloud_details(, "ggh4x")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘ggh4x-Ex.R’ failed - The error most likely occurred in: - - > ### Name: facet_nested_wrap - > ### Title: Ribbon of panels with nested strips. - > ### Aliases: facet_nested_wrap - > - > ### ** Examples - > - > # A standard plot - ... - 6. │ └─ggplot2 (local) setup(..., self = self) - 7. │ └─self$facet$compute_layout(data, self$facet_params) - 8. │ └─ggplot2 (local) compute_layout(..., self = self) - 9. │ └─ggplot2:::wrap_layout(id, dims, params$dir) - 10. │ └─ggplot2:::data_frame0(...) - 11. │ └─vctrs::data_frame(..., .name_repair = "minimal") - 12. └─vctrs:::stop_recycle_incompatible_size(...) - 13. └─vctrs:::stop_vctrs(...) - 14. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(ggh4x) - Loading required package: ggplot2 - > - > test_check("ggh4x") - [ FAIL 8 | WARN 0 | SKIP 18 | PASS 723 ] - - ... - 11. │ └─ggplot2:::wrap_layout(id, dims, params$dir) - 12. │ └─ggplot2:::data_frame0(...) - 13. │ └─vctrs::data_frame(..., .name_repair = "minimal") - 14. └─vctrs:::stop_recycle_incompatible_size(...) - 15. └─vctrs:::stop_vctrs(...) - 16. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) - - [ FAIL 8 | WARN 0 | SKIP 18 | PASS 723 ] - Error: Test failures - Execution halted - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘Facets.Rmd’ using rmarkdown - - Quitting from lines 33-39 [wrap_mimick] (Facets.Rmd) - Error: processing vignette 'Facets.Rmd' failed with diagnostics: - Can't recycle `ROW` (size 0) to size 7. - --- failed re-building ‘Facets.Rmd’ - - --- re-building ‘Miscellaneous.Rmd’ using rmarkdown - ``` - -## In both - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘Facets.Rmd’ - ... - Loading required package: ggplot2 - - > p <- ggplot(mpg, aes(displ, hwy, colour = as.factor(cyl))) + - + geom_point() + labs(x = "Engine displacement", y = "Highway miles per gallon") + .... [TRUNCATED] - - > p + facet_wrap2(vars(class)) - - ... - ℹ Error occurred in the 1st layer. - Caused by error in `setup_params()`: - ! A discrete 'nbinom' distribution cannot be fitted to continuous data. - Execution halted - - ‘Facets.Rmd’ using ‘UTF-8’... failed - ‘Miscellaneous.Rmd’ using ‘UTF-8’... OK - ‘PositionGuides.Rmd’ using ‘UTF-8’... OK - ‘Statistics.Rmd’ using ‘UTF-8’... failed - ‘ggh4x.Rmd’ using ‘UTF-8’... OK - ``` - -# ggheatmap - -
- -* Version: 2.2 -* GitHub: NA -* Source code: https://github.com/cran/ggheatmap -* Date/Publication: 2022-09-10 13:32:55 UTC -* Number of recursive dependencies: 127 - -Run `revdepcheck::cloud_details(, "ggheatmap")` for more info - -
- -## Newly broken - -* checking whether package ‘ggheatmap’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘ggheatmap’ - See ‘/tmp/workdir/ggheatmap/new/ggheatmap.Rcheck/00install.out’ for details. - ``` - -# ggScatRidges - -
- -* Version: 0.1.1 -* GitHub: https://github.com/matbou85/ggScatRidges -* Source code: https://github.com/cran/ggScatRidges -* Date/Publication: 2024-03-25 10:20:05 UTC -* Number of recursive dependencies: 117 - -Run `revdepcheck::cloud_details(, "ggScatRidges")` for more info - -
- -## Newly broken - -* checking whether package ‘ggScatRidges’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘ggScatRidges’ - See ‘/tmp/workdir/ggScatRidges/new/ggScatRidges.Rcheck/00install.out’ for details. - ``` - -# GimmeMyPlot - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/GimmeMyPlot -* Date/Publication: 2023-10-18 16:10:02 UTC -* Number of recursive dependencies: 111 - -Run `revdepcheck::cloud_details(, "GimmeMyPlot")` for more info - -
- -## Newly broken - -* checking whether package ‘GimmeMyPlot’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘GimmeMyPlot’ - See ‘/tmp/workdir/GimmeMyPlot/new/GimmeMyPlot.Rcheck/00install.out’ for details. - ``` - -# hilldiv - -
- -* Version: 1.5.1 -* GitHub: https://github.com/anttonalberdi/hilldiv -* Source code: https://github.com/cran/hilldiv -* Date/Publication: 2019-10-01 14:40:02 UTC -* Number of recursive dependencies: 153 - -Run `revdepcheck::cloud_details(, "hilldiv")` for more info - -
- -## Newly broken - -* checking whether package ‘hilldiv’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘hilldiv’ - See ‘/tmp/workdir/hilldiv/new/hilldiv.Rcheck/00install.out’ for details. - ``` - -# hJAM - -
- -* Version: 1.0.0 -* GitHub: https://github.com/lailylajiang/hJAM -* Source code: https://github.com/cran/hJAM -* Date/Publication: 2020-02-20 14:50:05 UTC -* Number of recursive dependencies: 101 -Run `revdepcheck::cloud_details(, "hJAM")` for more info - -
- -## Newly broken - -* checking whether package ‘hJAM’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘hJAM’ - See ‘/tmp/workdir/hJAM/new/hJAM.Rcheck/00install.out’ for details. - ``` - -# iglu - -
- -* Version: 4.0.0 -* GitHub: https://github.com/irinagain/iglu -* Source code: https://github.com/cran/iglu -* Date/Publication: 2024-02-23 17:50:02 UTC -* Number of recursive dependencies: 125 +# eventstudyr (missing labels) + +# EvoPhylo (patchwork) -Run `revdepcheck::cloud_details(, "iglu")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘iglu-Ex.R’ failed - The error most likely occurred in: - - > ### Name: mage_ma_single - > ### Title: Calculates Mean Amplitude of Glycemic Excursions (see "mage") - > ### Aliases: mage_ma_single - > - > ### ** Examples - > - > data(example_data_1_subject) - ... - 12. └─ggplot2 (local) transform_df(..., self = self) - 13. └─base::lapply(df[aesthetics], self$transform) - 14. └─ggplot2 (local) FUN(X[[i]], ...) - 15. └─ggplot2 (local) transform(..., self = self) - 16. └─ggproto_parent(ScaleContinuous, self)$transform(x) - 17. └─ggplot2 (local) transform(..., self = self) - 18. └─transformation$transform(x) - 19. └─cli::cli_abort("{.fun transform_time} works with objects of class {.cls POSIXct} only") - 20. └─rlang::abort(...) - Execution halted - ``` +# expirest (missing labels) -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘MAGE.Rmd’ - ... - - > fig1data <- example_data_1_subject[1:200, ] - - > mage(fig1data, plot = TRUE, show_ma = TRUE, title = "Glucose Trace - Subject 1") - - When sourcing ‘MAGE.R’: - Error: ℹ In index: 1. - Caused by error in `transformation$transform()`: - ! `transform_time()` works with objects of class only - Execution halted - - ‘AGP_and_Episodes.Rmd’ using ‘UTF-8’... OK - ‘MAGE.Rmd’ using ‘UTF-8’... failed - ‘iglu.Rmd’ using ‘UTF-8’... OK - ‘lasagna_plots.Rmd’ using ‘UTF-8’... OK - ‘metrics_list.Rmd’ using ‘UTF-8’... OK - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘AGP_and_Episodes.Rmd’ using rmarkdown - ``` - -# ImFoR - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/ImFoR -* Date/Publication: 2023-09-21 18:50:02 UTC -* Number of recursive dependencies: 173 - -Run `revdepcheck::cloud_details(, "ImFoR")` for more info - -
- -## Newly broken - -* checking whether package ‘ImFoR’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘ImFoR’ - See ‘/tmp/workdir/ImFoR/new/ImFoR.Rcheck/00install.out’ for details. - ``` - -# iNEXT.4steps - -
- -* Version: 1.0.0 -* GitHub: https://github.com/KaiHsiangHu/iNEXT.4steps -* Source code: https://github.com/cran/iNEXT.4steps -* Date/Publication: 2024-04-10 20:00:05 UTC -* Number of recursive dependencies: 107 - -Run `revdepcheck::cloud_details(, "iNEXT.4steps")` for more info - -
- -## Newly broken - -* checking whether package ‘iNEXT.4steps’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘iNEXT.4steps’ - See ‘/tmp/workdir/iNEXT.4steps/new/iNEXT.4steps.Rcheck/00install.out’ for details. - ``` - -# insane - -
- -* Version: 1.0.3 -* GitHub: https://github.com/mcanouil/insane -* Source code: https://github.com/cran/insane -* Date/Publication: 2023-11-14 21:50:02 UTC -* Number of recursive dependencies: 127 - -Run `revdepcheck::cloud_details(, "insane")` for more info - -
- -## Newly broken - -* checking whether package ‘insane’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘insane’ - See ‘/tmp/workdir/insane/new/insane.Rcheck/00install.out’ for details. - ``` - -# MarketMatching - -
- -* Version: 1.2.1 -* GitHub: NA -* Source code: https://github.com/cran/MarketMatching -* Date/Publication: 2024-01-31 09:40:02 UTC -* Number of recursive dependencies: 73 - -Run `revdepcheck::cloud_details(, "MarketMatching")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘MarketMatching-Vignette.Rmd’ using rmarkdown_notangle - - Quitting from lines 114-115 [unnamed-chunk-3] (MarketMatching-Vignette.Rmd) - Error: processing vignette 'MarketMatching-Vignette.Rmd' failed with diagnostics: - `transform_date()` works with objects of class only - --- failed re-building ‘MarketMatching-Vignette.Rmd’ - - SUMMARY: processing the following file failed: - ‘MarketMatching-Vignette.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# mc2d - -
- -* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/mc2d -* Date/Publication: 2023-07-17 16:00:02 UTC -* Number of recursive dependencies: 84 - -Run `revdepcheck::cloud_details(, "mc2d")` for more info - -
- -## Newly broken - -* checking whether package ‘mc2d’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘mc2d’ - See ‘/tmp/workdir/mc2d/new/mc2d.Rcheck/00install.out’ for details. - ``` - -## In both - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘docmcEnglish.Rnw’ using Sweave - Loading required package: mvtnorm - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘mc2d’ - - Attaching package: ‘mc2d’ - - The following objects are masked from ‘package:base’: - - pmax, pmin - ... - l.179 \RequirePackage{grfext}\relax - ^^M - ! ==> Fatal error occurred, no output PDF file produced! - --- failed re-building ‘mc2dLmEnglish.rnw’ - - SUMMARY: processing the following files failed: - ‘docmcEnglish.Rnw’ ‘mc2dLmEnglish.rnw’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# MetaIntegrator - -
- -* Version: 2.1.3 -* GitHub: NA -* Source code: https://github.com/cran/MetaIntegrator -* Date/Publication: 2020-02-26 13:00:11 UTC -* Number of recursive dependencies: 178 - -Run `revdepcheck::cloud_details(, "MetaIntegrator")` for more info - -
- -## Newly broken - -* checking whether package ‘MetaIntegrator’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘MetaIntegrator’ - See ‘/tmp/workdir/MetaIntegrator/new/MetaIntegrator.Rcheck/00install.out’ for details. - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 6.8Mb - sub-directories of 1Mb or more: - data 3.9Mb - doc 2.1Mb - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘BiocManager’ ‘DT’ ‘GEOmetadb’ ‘RMySQL’ ‘RSQLite’ ‘gplots’ ‘pheatmap’ - ‘readr’ - All declared Imports should be used. - ``` - -# MF.beta4 - -
- -* Version: 1.0.3 -* GitHub: https://github.com/AnneChao/MF.beta4 -* Source code: https://github.com/cran/MF.beta4 -* Date/Publication: 2024-04-16 16:30:02 UTC -* Number of recursive dependencies: 173 - -Run `revdepcheck::cloud_details(, "MF.beta4")` for more info - -
- -## Newly broken - -* checking whether package ‘MF.beta4’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘MF.beta4’ - See ‘/tmp/workdir/MF.beta4/new/MF.beta4.Rcheck/00install.out’ for details. - ``` - -## In both - -* checking re-building of vignette outputs ... WARNING - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘Introduction.Rnw’ using Sweave - Error: processing vignette 'Introduction.Rnw' failed with diagnostics: - Running 'texi2dvi' on 'Introduction.tex' failed. - LaTeX errors: - ! LaTeX Error: File `pdfpages.sty' not found. - - Type X to quit or to proceed, - or enter new name. (Default extension: sty) - ... - l.4 ^^M - - ! ==> Fatal error occurred, no output PDF file produced! - --- failed re-building ‘Introduction.Rnw’ - - SUMMARY: processing the following file failed: - ‘Introduction.Rnw’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# MIMSunit - -
- -* Version: 0.11.2 -* GitHub: https://github.com/mhealthgroup/MIMSunit -* Source code: https://github.com/cran/MIMSunit -* Date/Publication: 2022-06-21 11:00:09 UTC -* Number of recursive dependencies: 114 - -Run `revdepcheck::cloud_details(, "MIMSunit")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘MIMSunit-Ex.R’ failed - The error most likely occurred in: - - > ### Name: illustrate_extrapolation - > ### Title: Plot illustrations about extrapolation in illustration style. - > ### Aliases: illustrate_extrapolation - > - > ### ** Examples - > - > # Use the maxed-out data for the conceptual diagram - ... - 12. └─ggplot2 (local) transform_df(..., self = self) - 13. └─base::lapply(df[aesthetics], self$transform) - 14. └─ggplot2 (local) FUN(X[[i]], ...) - 15. └─ggplot2 (local) transform(..., self = self) - 16. └─ggproto_parent(ScaleContinuous, self)$transform(x) - 17. └─ggplot2 (local) transform(..., self = self) - 18. └─transformation$transform(x) - 19. └─cli::cli_abort("{.fun transform_time} works with objects of class {.cls POSIXct} only") - 20. └─rlang::abort(...) - Execution halted - ``` - -# missingHE - -
- -* Version: 1.5.0 -* GitHub: NA -* Source code: https://github.com/cran/missingHE -* Date/Publication: 2023-03-21 08:50:02 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "missingHE")` for more info - -
- -## Newly broken - -* checking whether package ‘missingHE’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘missingHE’ - See ‘/tmp/workdir/missingHE/new/missingHE.Rcheck/00install.out’ for details. - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘mcmcr’ - All declared Imports should be used. - ``` - -# MSPRT - -
- -* Version: 3.0 -* GitHub: NA -* Source code: https://github.com/cran/MSPRT -* Date/Publication: 2020-11-13 10:20:05 UTC -* Number of recursive dependencies: 87 - -Run `revdepcheck::cloud_details(, "MSPRT")` for more info - -
- -## Newly broken - -* checking whether package ‘MSPRT’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘MSPRT’ - See ‘/tmp/workdir/MSPRT/new/MSPRT.Rcheck/00install.out’ for details. - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘datasets’ ‘grDevices’ ‘graphics’ ‘iterators’ ‘methods’ - All declared Imports should be used. - ``` - -# nzelect - -
- -* Version: 0.4.0 -* GitHub: NA -* Source code: https://github.com/cran/nzelect -* Date/Publication: 2017-10-02 20:35:23 UTC -* Number of recursive dependencies: 95 - -Run `revdepcheck::cloud_details(, "nzelect")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘nzelect-Ex.R’ failed - The error most likely occurred in: - - > ### Name: polls - > ### Title: New Zealand Opinion Polls - > ### Aliases: polls - > ### Keywords: datasets - > - > ### ** Examples - > - ... - 10. └─ggplot2 (local) FUN(X[[i]], ...) - 11. └─scale$transform_df(df = df) - 12. └─ggplot2 (local) transform_df(..., self = self) - 13. └─base::lapply(df[aesthetics], self$transform) - 14. └─ggplot2 (local) FUN(X[[i]], ...) - 15. └─ggplot2 (local) transform(..., self = self) - 16. └─transformation$transform(x) - 17. └─cli::cli_abort("{.fun transform_date} works with objects of class {.cls Date} only") - 18. └─rlang::abort(...) - Execution halted - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 5.9Mb - sub-directories of 1Mb or more: - data 5.6Mb - ``` - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 6409 marked UTF-8 strings - ``` - -# OenoKPM - -
- -* Version: 2.4.1 -* GitHub: NA -* Source code: https://github.com/cran/OenoKPM -* Date/Publication: 2024-04-08 19:20:10 UTC -* Number of recursive dependencies: 85 - -Run `revdepcheck::cloud_details(, "OenoKPM")` for more info - -
- -## Newly broken - -* checking whether package ‘OenoKPM’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘OenoKPM’ - See ‘/tmp/workdir/OenoKPM/new/OenoKPM.Rcheck/00install.out’ for details. - ``` - -# posologyr - -
- -* Version: 1.2.4 -* GitHub: https://github.com/levenc/posologyr -* Source code: https://github.com/cran/posologyr -* Date/Publication: 2024-02-09 11:50:02 UTC -* Number of recursive dependencies: 98 - -Run `revdepcheck::cloud_details(, "posologyr")` for more info - -
- -## Newly broken - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘a_priori_dosing.Rmd’ - ... - 16: source(output, echo = TRUE) - 17: doTryCatch(return(expr), name, parentenv, handler) - 18: tryCatchOne(expr, names, parentenv, handlers[[1L]]) - 19: tryCatchList(expr, classes, parentenv, handlers) - 20: tryCatch({ source(output, echo = TRUE)}, error = function(e) { cat("\n When sourcing ", sQuote(output), ":\n", sep = "") stop(conditionMessage(e), call. = FALSE, domain = NA)}) - 21: tools:::.run_one_vignette("a_priori_dosing.Rmd", "/tmp/workdir/posologyr/new/posologyr.Rcheck/00_pkg_src/posologyr/vignettes", encoding = "UTF-8", pkgdir = "/tmp/workdir/posologyr/new/posologyr.Rcheck/00_pkg_src/posologyr") - An irrecoverable exception occurred. R is aborting now ... - ... - Segmentation fault - - ... incomplete output. Crash? - - ‘a_posteriori_dosing.Rmd’ using ‘UTF-8’... OK - ‘a_priori_dosing.Rmd’ using ‘UTF-8’... failed to complete the test - ‘auc_based_dosing.Rmd’ using ‘UTF-8’... OK - ‘multiple_endpoints.Rmd’ using ‘UTF-8’... OK - ‘patient_data_input.Rmd’ using ‘UTF-8’... OK - ‘posologyr_user_defined_models.Rmd’ using ‘UTF-8’... OK - ``` - -# qicharts - -
- -* Version: 0.5.8 -* GitHub: NA -* Source code: https://github.com/cran/qicharts -* Date/Publication: 2021-04-20 12:20:03 UTC -* Number of recursive dependencies: 56 - -Run `revdepcheck::cloud_details(, "qicharts")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘qicharts-Ex.R’ failed - The error most likely occurred in: - - > ### Name: tcc - > ### Title: Trellis Control Charts - > ### Aliases: tcc - > - > ### ** Examples - > - > # Run chart of 24 random normal variables - ... - 10. └─ggplot2 (local) FUN(X[[i]], ...) - 11. └─scale$transform_df(df = df) - 12. └─ggplot2 (local) transform_df(..., self = self) - 13. └─base::lapply(df[aesthetics], self$transform) - 14. └─ggplot2 (local) FUN(X[[i]], ...) - 15. └─ggplot2 (local) transform(..., self = self) - 16. └─transformation$transform(x) - 17. └─cli::cli_abort("{.fun transform_date} works with objects of class {.cls Date} only") - 18. └─rlang::abort(...) - Execution halted - ``` - -# qicharts2 - -
- -* Version: 0.7.5 -* GitHub: https://github.com/anhoej/qicharts2 -* Source code: https://github.com/cran/qicharts2 -* Date/Publication: 2024-05-09 06:20:03 UTC -* Number of recursive dependencies: 71 - -Run `revdepcheck::cloud_details(, "qicharts2")` for more info - -
- -## Newly broken - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘qicharts2.Rmd’ - ... - > qic(month, n, notes = notes, data = cdi, decimals = 0, - + title = "Hospital acquired Clostridium difficile infections", - + ylab = "Count", x .... [TRUNCATED] - - > qic(month, n, data = cdi, decimals = 0, freeze = 24, - + part.labels = c("Baseline", "Intervention"), title = "Hospital acquired Clostridium diff ..." ... [TRUNCATED] - - When sourcing ‘qicharts2.R’: - Error: `transform_time()` works with objects of class only - Execution halted - - ‘qicharts2.Rmd’ using ‘UTF-8’... failed - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘qicharts2.Rmd’ using rmarkdown - ``` - -# QuadratiK - -
- -* Version: 1.1.0 -* GitHub: https://github.com/giovsaraceno/QuadratiK-package -* Source code: https://github.com/cran/QuadratiK -* Date/Publication: 2024-05-14 13:50:06 UTC -* Number of recursive dependencies: 131 - -Run `revdepcheck::cloud_details(, "QuadratiK")` for more info - -
- -## Newly broken - -* checking whether package ‘QuadratiK’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘QuadratiK’ - See ‘/tmp/workdir/QuadratiK/new/QuadratiK.Rcheck/00install.out’ for details. - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 14.6Mb - sub-directories of 1Mb or more: - libs 12.9Mb - ``` - -# RCTrep - -
- -* Version: 1.2.0 -* GitHub: https://github.com/duolajiang/RCTrep -* Source code: https://github.com/cran/RCTrep -* Date/Publication: 2023-11-02 14:40:02 UTC -* Number of recursive dependencies: 166 - -Run `revdepcheck::cloud_details(, "RCTrep")` for more info - -
- -## Newly broken - -* checking whether package ‘RCTrep’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘RCTrep’ - See ‘/tmp/workdir/RCTrep/new/RCTrep.Rcheck/00install.out’ for details. - ``` +# explainer (plotly) -# scdtb +# ezEDA (missing labels) -
+# ezplot (0-length width) -* Version: 0.1.0 -* GitHub: https://github.com/mightymetrika/scdtb -* Source code: https://github.com/cran/scdtb -* Date/Publication: 2024-04-30 08:50:02 UTC -* Number of recursive dependencies: 97 +# fable.prophet (ggdist) -Run `revdepcheck::cloud_details(, "scdtb")` for more info +# fabletools (ggdist) -
+# factoextra (0-length width) -## Newly broken +# fairmodels (missing labels) -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - > # * https://testthat.r-lib.org/articles/special-files.html - ... - Error in `nlme::gls(model = mod_form, data = .df, method = "REML", correlation = nlme::corAR1(form = re_form), - ...)`: false convergence (8) - Backtrace: - ▆ - 1. └─scdtb::mixed_model_analysis(...) at test-mixed_model_analysis.R:114:3 - 2. └─nlme::gls(...) - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 45 ] - Error: Test failures - Execution halted - ``` +# fddm (ggforce) -# SCOUTer +# feasts (missing labels) -
+# ffp (ggdist) -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/SCOUTer -* Date/Publication: 2020-06-30 09:30:03 UTC -* Number of recursive dependencies: 99 +# fido (ggdist) -Run `revdepcheck::cloud_details(, "SCOUTer")` for more info +# flipr (unknown) + +``` +#
+# +# * Version: 0.3.3 +# * GitHub: https://github.com/LMJL-Alea/flipr +# * Source code: https://github.com/cran/flipr +# * Date/Publication: 2023-08-23 09:00:02 UTC +# * Number of recursive dependencies: 106 +# +# Run `revdepcheck::cloud_details(, "flipr")` for more info +# +#
+# +# ## Newly broken +# +# * checking re-building of vignette outputs ... NOTE +# ``` +# Error(s) in re-building vignettes: +# --- re-building ‘alternative.Rmd’ using rmarkdown +# --- finished re-building ‘alternative.Rmd’ +# +# --- re-building ‘exactness.Rmd’ using rmarkdown +# +# Quitting from lines 142-177 [unnamed-chunk-1] (exactness.Rmd) +# Error: processing vignette 'exactness.Rmd' failed with diagnostics: +# subscript out of bounds +# --- failed re-building ‘exactness.Rmd’ +# +# --- re-building ‘flipr.Rmd’ using rmarkdown +# ``` +# +# ## In both +# +# * checking running R code from vignettes ... ERROR +# ``` +# Errors in running code in vignettes: +# when running code in ‘exactness.Rmd’ +# ... +# +# > library(flipr) +# +# > load("../R/sysdata.rda") +# Warning in readChar(con, 5L, useBytes = TRUE) : +# cannot open compressed file '../R/sysdata.rda', probable reason 'No such file or directory' +# +# ... +# cannot open compressed file '../R/sysdata.rda', probable reason 'No such file or directory' +# +# When sourcing ‘plausibility.R’: +# Error: cannot open the connection +# Execution halted +# +# ‘alternative.Rmd’ using ‘UTF-8’... OK +# ‘exactness.Rmd’ using ‘UTF-8’... failed +# ‘flipr.Rmd’ using ‘UTF-8’... failed +# ‘plausibility.Rmd’ using ‘UTF-8’... failed +# ``` +# +# * checking installed package size ... NOTE +# ``` +# installed size is 11.0Mb +# sub-directories of 1Mb or more: +# doc 9.1Mb +# libs 1.2Mb +# ``` +``` -
+# foqat (ggnewscale) -## Newly broken +# forestly (patchwork) -* checking whether package ‘SCOUTer’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘SCOUTer’ - See ‘/tmp/workdir/SCOUTer/new/SCOUTer.Rcheck/00install.out’ for details. - ``` - -# sievePH - -
+# frailtyEM (plotly) -* Version: 1.0.4 -* GitHub: https://github.com/mjuraska/sievePH -* Source code: https://github.com/cran/sievePH -* Date/Publication: 2023-02-03 18:40:02 UTC -* Number of recursive dependencies: 82 - -Run `revdepcheck::cloud_details(, "sievePH")` for more info - -
- -## Newly broken - -* checking whether package ‘sievePH’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘sievePH’ - See ‘/tmp/workdir/sievePH/new/sievePH.Rcheck/00install.out’ for details. - ``` +# funcharts (patchwork) -# SouthParkRshiny +# geomtextpath (default access) -
+# GGally (missing labels) -* Version: 1.0.0 -* GitHub: https://github.com/Amalan-ConStat/SouthParkRshiny -* Source code: https://github.com/cran/SouthParkRshiny -* Date/Publication: 2024-03-09 11:10:08 UTC -* Number of recursive dependencies: 118 - -Run `revdepcheck::cloud_details(, "SouthParkRshiny")` for more info - -
- -## Newly broken - -* checking whether package ‘SouthParkRshiny’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘SouthParkRshiny’ - See ‘/tmp/workdir/SouthParkRshiny/new/SouthParkRshiny.Rcheck/00install.out’ for details. - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 8.6Mb - sub-directories of 1Mb or more: - data 8.0Mb - ``` - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 1562 marked UTF-8 strings - ``` +# gganimate (gganimate) -# SqueakR +# ggbrain (ggnewscale) -
+# ggbreak (patchwork) -* Version: 1.3.0 -* GitHub: https://github.com/osimon81/SqueakR -* Source code: https://github.com/cran/SqueakR -* Date/Publication: 2022-06-28 09:20:04 UTC -* Number of recursive dependencies: 142 +# ggdark (default access) -Run `revdepcheck::cloud_details(, "SqueakR")` for more info +# ggdist (ggdist) -
+# ggDoubleHeat (ggnewscale) -## Newly broken +# ggeasy (missing labels) -* checking whether package ‘SqueakR’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘SqueakR’ - See ‘/tmp/workdir/SqueakR/new/SqueakR.Rcheck/00install.out’ for details. - ``` +# ggedit (saved to disk) -## In both +# ggESDA (passing NULL aesthetic mapping) -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘SqueakR.Rmd’ - ... - $ experimenters : NULL - $ experimental_data: list() - - > my_new_data <- add_timepoint_data(data_path = "../inst/extdata/Example_Mouse_Data.xlsx", - + t1 = 5, t2 = 25) - Adding call features Excel file to workspace... - - When sourcing ‘SqueakR.R’: - Error: `path` does not exist: ‘../inst/extdata/Example_Mouse_Data.xlsx’ - Execution halted - - ‘SqueakR.Rmd’ using ‘UTF-8’... failed - ``` +# ggfixest (visual differences) -* checking installed package size ... NOTE - ``` - installed size is 8.8Mb - sub-directories of 1Mb or more: - doc 8.2Mb - ``` +# ggforce (ggforce) -# survminer +Note: facet_zoom/facet_col/facet_row -
+# ggformula (docs) -* Version: 0.4.9 -* GitHub: https://github.com/kassambara/survminer -* Source code: https://github.com/cran/survminer -* Date/Publication: 2021-03-09 09:50:03 UTC -* Number of recursive dependencies: 130 +# ggfortify (tests) + +# gggenomes (patchwork) + +# ggh4x (unknown) + +``` +#
+# +# * Version: 0.2.8 +# * GitHub: https://github.com/teunbrand/ggh4x +# * Source code: https://github.com/cran/ggh4x +# * Date/Publication: 2024-01-23 21:00:02 UTC +# * Number of recursive dependencies: 77 +# +# Run `revdepcheck::cloud_details(, "ggh4x")` for more info +# +#
+# +# ## Newly broken +# +# * checking examples ... ERROR +# ``` +# Running examples in ‘ggh4x-Ex.R’ failed +# The error most likely occurred in: +# +# > ### Name: guide_stringlegend +# > ### Title: String legend +# > ### Aliases: guide_stringlegend +# > +# > ### ** Examples +# > +# > p <- ggplot(mpg, aes(displ, hwy)) + +# + geom_point(aes(colour = manufacturer)) +# > +# > # String legend can be set in the `guides()` function +# > p + guides(colour = guide_stringlegend(ncol = 2)) +# Error in (function (layer, df) : +# argument "theme" is missing, with no default +# Calls: ... use_defaults -> eval_from_theme -> %||% -> calc_element +# Execution halted +# ``` +# +# * checking tests ... ERROR +# ``` +# Running ‘testthat.R’ +# Running the tests in ‘tests/testthat.R’ failed. +# Complete output: +# > library(testthat) +# > library(ggh4x) +# Loading required package: ggplot2 +# > +# > test_check("ggh4x") +# [ FAIL 2 | WARN 20 | SKIP 18 | PASS 753 ] +# +# ... +# 25. └─ggplot2 (local) compute_geom_2(..., self = self) +# 26. └─self$geom$use_defaults(...) +# 27. └─ggplot2 (local) use_defaults(..., self = self) +# 28. └─ggplot2:::eval_from_theme(default_aes, theme) +# 29. ├─calc_element("geom", theme) %||% .default_geom_element +# 30. └─ggplot2::calc_element("geom", theme) +# +# [ FAIL 2 | WARN 20 | SKIP 18 | PASS 753 ] +# Error: Test failures +# Execution halted +# ``` +# +# * checking re-building of vignette outputs ... NOTE +# ``` +# Error(s) in re-building vignettes: +# --- re-building ‘Facets.Rmd’ using rmarkdown +# ``` +# +# ## In both +# +# * checking running R code from vignettes ... ERROR +# ``` +# Errors in running code in vignettes: +# when running code in ‘Miscellaneous.Rmd’ +# ... +# +# > ggplot(diamonds, aes(price, carat, colour = clarity)) + +# + geom_point(shape = ".") + scale_colour_brewer(palette = "Dark2", +# + guide = "stri ..." ... [TRUNCATED] +# Warning: The S3 guide system was deprecated in ggplot2 3.5.0. +# ℹ It has been replaced by a ggproto system that can be extended. +# +# ... +# ℹ Error occurred in the 1st layer. +# Caused by error in `setup_params()`: +# ! A discrete 'nbinom' distribution cannot be fitted to continuous data. +# Execution halted +# +# ‘Facets.Rmd’ using ‘UTF-8’... OK +# ‘Miscellaneous.Rmd’ using ‘UTF-8’... failed +# ‘PositionGuides.Rmd’ using ‘UTF-8’... OK +# ‘Statistics.Rmd’ using ‘UTF-8’... failed +# ‘ggh4x.Rmd’ using ‘UTF-8’... OK +# ``` +``` + +# gghighlight (default access) + +# ggHoriPlot (patchwork) + +# ggiraph (additional params) + +# ggiraphExtra (additional params) + +# ggmice (plotly) + +# ggmulti (custom use_defaults) + +# ggnewscale (ggnewscale) + +# ggparallel (unknown) + +``` +#
+# +# * Version: 0.4.0 +# * GitHub: https://github.com/heike/ggparallel +# * Source code: https://github.com/cran/ggparallel +# * Date/Publication: 2024-03-09 22:00:02 UTC +# * Number of recursive dependencies: 51 +# +# Run `revdepcheck::cloud_details(, "ggparallel")` for more info +# +#
+# +# ## Newly broken +# +# * checking tests ... ERROR +# ``` +# Running ‘testthat.R’ +# Running the tests in ‘tests/testthat.R’ failed. +# Complete output: +# > # This file is part of the standard setup for testthat. +# > # It is recommended that you do not modify it. +# > # +# > # Where should you do additional test configuration? +# > # Learn more about the roles of various files in: +# > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview +# > # * https://testthat.r-lib.org/articles/special-files.html +# ... +# 12. └─self$get_layer_key(params, layers[include], data[include], theme) +# 13. └─ggplot2 (local) get_layer_key(...) +# 14. └─base::Map(...) +# 15. └─base::mapply(FUN = f, ..., SIMPLIFY = FALSE) +# 16. └─ggplot2 (local) ``(layer = dots[[1L]][[1L]], df = dots[[2L]][[1L]]) +# 17. └─layer$compute_geom_2(key, single_params, theme) +# +# [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] +# Error: Test failures +# Execution halted +# ``` +``` -Run `revdepcheck::cloud_details(, "survminer")` for more info +# ggpicrust2 (patchwork) -
+# ggpie (ggnewscale) -## Newly broken +# ggplotlyExtra (plotly) -* checking whether package ‘survminer’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘survminer’ - See ‘/tmp/workdir/survminer/new/survminer.Rcheck/00install.out’ for details. - ``` +# ggpol (default access) -## In both +# ggpubr (update tests) -* checking installed package size ... NOTE - ``` - installed size is 6.3Mb - sub-directories of 1Mb or more: - doc 5.5Mb - ``` +# ggraph (guide theme passing) -# symptomcheckR +# ggredist (unknown) -
+``` +#
+# +# * Version: 0.0.2 +# * GitHub: https://github.com/alarm-redist/ggredist +# * Source code: https://github.com/cran/ggredist +# * Date/Publication: 2022-11-23 11:20:02 UTC +# * Number of recursive dependencies: 67 +# +# Run `revdepcheck::cloud_details(, "ggredist")` for more info +# +#
+# +# ## Newly broken +# +# * checking examples ... ERROR +# ``` +# Running examples in ‘ggredist-Ex.R’ failed +# The error most likely occurred in: +# +# > ### Name: geom_district_text +# > ### Title: Label Map Regions +# > ### Aliases: geom_district_text geom_district_label +# > ### stat_district_coordinates StatDistrictCoordinates GeomDistrictText +# > ### Keywords: datasets +# > +# > ### ** Examples +# ... +# 22. │ └─coord$transform(data, panel_params) +# 23. │ └─ggplot2 (local) transform(..., self = self) +# 24. │ └─ggplot2:::sf_rescale01(...) +# 25. │ └─sf::st_normalize(x, c(x_range[1], y_range[1], x_range[2], y_range[2])) +# 26. └─base::.handleSimpleError(...) +# 27. └─rlang (local) h(simpleError(msg, call)) +# 28. └─handlers[[1L]](cnd) +# 29. └─cli::cli_abort(...) +# 30. └─rlang::abort(...) +# Execution halted +# ``` +``` -* Version: 0.1.3 -* GitHub: https://github.com/ma-kopka/symptomcheckR -* Source code: https://github.com/cran/symptomcheckR -* Date/Publication: 2024-04-16 20:40:06 UTC -* Number of recursive dependencies: 101 +# ggRtsy (missing labels) -Run `revdepcheck::cloud_details(, "symptomcheckR")` for more info +# ggseqplot (length 0 width) -
+# ggside (unknown) -## Newly broken +``` +#
+# +# * Version: 0.3.1 +# * GitHub: https://github.com/jtlandis/ggside +# * Source code: https://github.com/cran/ggside +# * Date/Publication: 2024-03-01 09:12:37 UTC +# * Number of recursive dependencies: 76 +# +# Run `revdepcheck::cloud_details(, "ggside")` for more info +# +#
+# +# ## Newly broken +# +# * checking tests ... ERROR +# ``` +# Running ‘testthat.R’ +# Running the tests in ‘tests/testthat.R’ failed. +# Complete output: +# > library(testthat) +# > library(ggplot2) +# > library(ggside) +# Registered S3 method overwritten by 'ggside': +# method from +# +.gg ggplot2 +# > +# ... +# • ops_meaningful/alpha-0-5-from-function.svg +# • side_layers/boxplot2.svg +# • vdiff_irisScatter/collapsed-histo.svg +# • vdiff_irisScatter/facetgrid-collapsed-density.svg +# • vdiff_irisScatter/facetgrid-histo.svg +# • vdiff_irisScatter/facetgrid-side-density.svg +# • vdiff_irisScatter/stacked-side-density.svg +# • vdiff_irisScatter/yside-histo.svg +# Error: Test failures +# Execution halted +# ``` +# +# * checking for code/documentation mismatches ... WARNING +# ``` +# Codoc mismatches from documentation object 'geom_xsideabline': +# geom_xsidehline +# Code: function(mapping = NULL, data = NULL, position = "identity", +# ..., yintercept, na.rm = FALSE, show.legend = NA) +# Docs: function(mapping = NULL, data = NULL, ..., yintercept, na.rm = +# FALSE, show.legend = NA) +# Argument names in code not in docs: +# position +# Mismatches in argument names (first 3): +# Position: 3 Code: position Docs: ... +# ... +# Docs: function(mapping = NULL, data = NULL, stat = "identity", +# position = "identity", ..., lineend = "butt", linejoin +# = "round", linemitre = 10, arrow = NULL, na.rm = +# FALSE, show.legend = NA, inherit.aes = TRUE) +# Argument names in code not in docs: +# arrow.fill +# Mismatches in argument names: +# Position: 10 Code: arrow.fill Docs: na.rm +# Position: 11 Code: na.rm Docs: show.legend +# Position: 12 Code: show.legend Docs: inherit.aes +# ``` +``` -* checking whether package ‘symptomcheckR’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘symptomcheckR’ - See ‘/tmp/workdir/symptomcheckR/new/symptomcheckR.Rcheck/00install.out’ for details. - ``` +# ggspatial (missing defaults) -# tcgaViz +# ggtern (ggtern) -
+# ggupset (unknown) -* Version: 1.0.2 -* GitHub: NA -* Source code: https://github.com/cran/tcgaViz -* Date/Publication: 2023-04-04 15:40:02 UTC -* Number of recursive dependencies: 139 +``` +#
+# +# * Version: 0.4.0 +# * GitHub: https://github.com/const-ae/ggupset +# * Source code: https://github.com/cran/ggupset +# * Date/Publication: 2024-06-24 10:10:04 UTC +# * Number of recursive dependencies: 46 +# +# Run `revdepcheck::cloud_details(, "ggupset")` for more info +# +#
+# +# ## Newly broken +# +# * checking examples ... ERROR +# ``` +# Running examples in ‘ggupset-Ex.R’ failed +# The error most likely occurred in: +# +# > ### Name: axis_combmatrix +# > ### Title: Convert delimited text labels into a combination matrix axis +# > ### Aliases: axis_combmatrix +# > +# > ### ** Examples +# > +# > library(ggplot2) +# ... +# Datsun 710 Cyl: 4_Gears: 4 +# Hornet 4 Drive Cyl: 6_Gears: 3 +# Hornet Sportabout Cyl: 8_Gears: 3 +# Valiant Cyl: 6_Gears: 3 +# > ggplot(mtcars, aes(x=combined)) + +# + geom_bar() + +# + axis_combmatrix(sep = "_") +# Error in as.unit(e2) : object is not coercible to a unit +# Calls: ... polylineGrob -> is.unit -> unit.c -> Ops.unit -> as.unit +# Execution halted +# ``` +``` -Run `revdepcheck::cloud_details(, "tcgaViz")` for more info +# ggVennDiagram (plotly) -
+# greatR (patchwork) -## Newly broken +# Greymodels (plotly) -* checking whether package ‘tcgaViz’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘tcgaViz’ - See ‘/tmp/workdir/tcgaViz/new/tcgaViz.Rcheck/00install.out’ for details. - ``` +# gtExtras (unknown) -# TestGardener +``` +#
+# +# * Version: 0.5.0 +# * GitHub: https://github.com/jthomasmock/gtExtras +# * Source code: https://github.com/cran/gtExtras +# * Date/Publication: 2023-09-15 22:32:06 UTC +# * Number of recursive dependencies: 105 +# +# Run `revdepcheck::cloud_details(, "gtExtras")` for more info +# +#
+# +# ## Newly broken +# +# * checking tests ... ERROR +# ``` +# Running ‘testthat.R’ +# Running the tests in ‘tests/testthat.R’ failed. +# Complete output: +# > library(testthat) +# > library(gtExtras) +# Loading required package: gt +# +# Attaching package: 'gt' +# +# The following object is masked from 'package:testthat': +# ... +# ══ Failed tests ════════════════════════════════════════════════════════════════ +# ── Failure ('test-gt_plt_bar.R:44:3'): gt_plt_bar svg is created and has specific values ── +# `bar_neg_vals` (`actual`) not equal to c("49.19", "32.79", "16.40", "16.40", "32.79", "49.19") (`expected`). +# +# `actual`: "49.19" "32.79" "16.40" "0.00" "0.00" "0.00" +# `expected`: "49.19" "32.79" "16.40" "16.40" "32.79" "49.19" +# +# [ FAIL 1 | WARN 14 | SKIP 23 | PASS 115 ] +# Error: Test failures +# Execution halted +# ``` +``` -
+# HaploCatcher (patchwork) -* Version: 3.3.3 -* GitHub: NA -* Source code: https://github.com/cran/TestGardener -* Date/Publication: 2024-03-20 13:50:02 UTC -* Number of recursive dependencies: 131 +# healthyR (plotly) -Run `revdepcheck::cloud_details(, "TestGardener")` for more info +# healthyR.ts (plotly) -
+# heatmaply (plotly) -## Newly broken +# hermiter (patchwork) -* checking whether package ‘TestGardener’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘TestGardener’ - See ‘/tmp/workdir/TestGardener/new/TestGardener.Rcheck/00install.out’ for details. - ``` +# hesim (missing labels) -# tidydr +# hidecan (ggnewscale) -
+# HVT (plotly) -* Version: 0.0.5 -* GitHub: https://github.com/YuLab-SMU/tidydr -* Source code: https://github.com/cran/tidydr -* Date/Publication: 2023-03-08 09:20:02 UTC -* Number of recursive dependencies: 71 +# hypsoLoop (namespace conflict) -Run `revdepcheck::cloud_details(, "tidydr")` for more info +# ICvectorfields (ggnewscale) -
+# idopNetwork (patchwork) -## Newly broken +# inferCSN (plotly) -* checking whether package ‘tidydr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details. - ``` +# insurancerating (patchwork) -## Installation +# inTextSummaryTable (default access) -### Devel +# inventorize (unknown) ``` -* installing *source* package ‘tidydr’ ... -** package ‘tidydr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in get(x, envir = ns, inherits = FALSE) : - object 'len0_null' not found -Error: unable to load R code in package ‘tidydr’ -Execution halted -ERROR: lazy loading failed for package ‘tidydr’ -* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’ +#
+# +# * Version: 1.1.1 +# * GitHub: NA +# * Source code: https://github.com/cran/inventorize +# * Date/Publication: 2022-05-31 22:20:09 UTC +# * Number of recursive dependencies: 71 +# +# Run `revdepcheck::cloud_details(, "inventorize")` for more info +# +#
+# +# ## Newly broken +# +# * checking whether package ‘inventorize’ can be installed ... ERROR +# ``` +# Installation failed. +# See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details. +# ``` +# +# ## Installation +# +# ### Devel +# +# ``` +# * installing *source* package ‘inventorize’ ... +# ** package ‘inventorize’ successfully unpacked and MD5 sums checked +# ** using staged installation +# ** R +# ** byte-compile and prepare package for lazy loading +# Error in pm[[2]] : subscript out of bounds +# Error: unable to load R code in package ‘inventorize’ +# Execution halted +# ERROR: lazy loading failed for package ‘inventorize’ +# * removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’ +# +# +# ``` +# ### CRAN +# +# ``` +# * installing *source* package ‘inventorize’ ... +# ** package ‘inventorize’ successfully unpacked and MD5 sums checked +# ** using staged installation +# ** R +# ** byte-compile and prepare package for lazy loading +# Warning in qgamma(service_level, alpha, beta) : NaNs produced +# Warning in qgamma(service_level, alpha, beta) : NaNs produced +# ** help +# *** installing help indices +# ** building package indices +# ** testing if installed package can be loaded from temporary location +# ** testing if installed package can be loaded from final location +# ** testing if installed package keeps a record of temporary installation path +# * DONE (inventorize) +# +# +# ``` +``` +# karel (gganimate) + +# kDGLM (plotly) + +# latentcor (plotly) + +# lcars (device issue) + +# lemon (resolve theme) + +# lfproQC (plotly) + +# LMoFit (saved to disk) + +# manydata (plot slots) + +# MARVEL (ggnewscale) + +# MBNMAdose (cannot reproduce) + +# MBNMAtime (ggdist) + +# MetaNet (ggnewscale) +# metR (fixed in dev) +# migraph (missing labels) + +# MiMIR (plotly) + +# miRetrieve (plotly) + +# misspi (plotly) + +# mizer (cannot reproduce) + +# mlr3spatiotempcv (patchwork) + +# mlr3viz (patchwork) + +# modeltime.resample (plotly) + +# move (false positive) + +# mtb (missing labels) + +# neatmaps (plotly) + +# NetFACS (false positive) + +# NeuralSens (ggnewscale) + +# NHSRplotthedots (missing labels) + +# NIMAA (plotly) + +# OBIC (patchwork) + +# OmicNavigator (plotly) + +# oncomsm (patchwork) + +# pafr (missing labels) + +# patchwork (patchwork) + +# pathviewr (missing labels) + +# pcutils (patchwork) + +# pdxTrees (gganimate) + +# personalized (plotly) + +# phylepic (ggnewscale) + +# Plasmidprofiler (plotly) + +# platetools (faulty tests) + +# plotDK (missing labels) + +# plotly (plotly) + +# pmartR (unknown) + +``` +#
+# +# * Version: 2.4.5 +# * GitHub: https://github.com/pmartR/pmartR +# * Source code: https://github.com/cran/pmartR +# * Date/Publication: 2024-05-21 15:50:02 UTC +# * Number of recursive dependencies: 149 +# +# Run `revdepcheck::cloud_details(, "pmartR")` for more info +# +#
+# +# ## Newly broken +# +# * checking tests ... ERROR +# ``` +# Running ‘testthat.R’ +# Running the tests in ‘tests/testthat.R’ failed. +# Complete output: +# > library(testthat) +# > library(pmartR) +# > +# > test_check("pmartR") +# [ FAIL 1 | WARN 1 | SKIP 11 | PASS 2375 ] +# +# ══ Skipped tests (11) ══════════════════════════════════════════════════════════ +# ... +# • plots/plot-spansres-color-high-color-low.svg +# • plots/plot-spansres.svg +# • plots/plot-statres-anova-volcano.svg +# • plots/plot-statres-anova.svg +# • plots/plot-statres-combined-volcano.svg +# • plots/plot-statres-combined.svg +# • plots/plot-statres-gtest.svg +# • plots/plot-totalcountfilt.svg +# Error: Test failures +# Execution halted +# ``` +# +# ## In both +# +# * checking installed package size ... NOTE +# ``` +# installed size is 10.4Mb +# sub-directories of 1Mb or more: +# R 1.5Mb +# help 1.5Mb +# libs 6.3Mb +# ``` ``` -### CRAN + +# pmxTools (ggdist) + +# posterior (ggdist) + +# PPQplan (plotly) + +# ppseq (plotly) + +# precrec (patchwork) + +# priorsense (ggdist) + +# ProAE (ggnewscale) + +# probably (missing labels) + +# processmapR (plotly) + +# psborrow (missing labels) + +# r2dii.plot (missing labels) + +# Radviz (accessing defaults) + +# rassta (plotly) + +# REddyProc (false positive) + +# redist (patchwork) + +# reReg (length 0 width) + +# reservr (patchwork) + +# rKOMICS (unknown) ``` -* installing *source* package ‘tidydr’ ... -** package ‘tidydr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (tidydr) +#
+# +# * Version: 1.3 +# * GitHub: NA +# * Source code: https://github.com/cran/rKOMICS +# * Date/Publication: 2023-06-29 22:40:03 UTC +# * Number of recursive dependencies: 128 +# +# Run `revdepcheck::cloud_details(, "rKOMICS")` for more info +# +#
+# +# ## Newly broken +# +# * checking examples ... ERROR +# ``` +# Running examples in ‘rKOMICS-Ex.R’ failed +# The error most likely occurred in: +# +# > ### Name: msc.pca +# > ### Title: Prinicple Component Analysis based on MSC +# > ### Aliases: msc.pca +# > +# > ### ** Examples +# > +# > data(matrices) +# ... +# 11. │ └─base::withCallingHandlers(...) +# 12. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) +# 13. └─l$compute_geom_2(d, theme = plot$theme) +# 14. └─ggplot2 (local) compute_geom_2(..., self = self) +# 15. └─self$geom$use_defaults(...) +# 16. └─ggplot2 (local) use_defaults(..., self = self) +# 17. └─ggplot2:::check_aesthetics(new_params, nrow(data)) +# 18. └─cli::cli_abort(...) +# 19. └─rlang::abort(...) +# Execution halted +# ``` +# +# ## In both +# +# * checking installed package size ... NOTE +# ``` +# installed size is 24.8Mb +# sub-directories of 1Mb or more: +# extdata 24.0Mb +# ``` +# +# * checking re-building of vignette outputs ... NOTE +# ``` +# Error(s) in re-building vignettes: +# --- re-building ‘example.Rnw’ using Sweave +# Loading required package: viridisLite +# Warning: Removed 95 rows containing non-finite outside the scale range +# (`stat_boxplot()`). +# Warning: Removed 89 rows containing non-finite outside the scale range +# (`stat_boxplot()`). +# Warning: Removed 149 rows containing non-finite outside the scale range +# (`stat_boxplot()`). +# Warning: Removed 286 rows containing non-finite outside the scale range +# ... +# l.5 \usepackage +# {xcolor}^^M +# ! ==> Fatal error occurred, no output PDF file produced! +# --- failed re-building ‘example.Rnw’ +# +# SUMMARY: processing the following file failed: +# ‘example.Rnw’ +# +# Error: Vignette re-building failed. +# Execution halted +# ``` +``` + +# RKorAPClient (missing labels) + +# RNAseqQC (patchwork) + +# roahd (plotly) + +# romic (plotly) + +# roptions (plotly) + +# santaR (plot slots) + +# scdtb (missing labels) + +# scoringutils (ggdist) + +# scUtils (missing labels) + +# SCVA (plotly) + +# SDMtune (missing labels) + +# SeaVal (plotly) + +# sgsR (missing labels) + +# SHAPforxgboost (ggforce) +# SHELF (unknown) ``` -# tis - -
- -* Version: 1.39 -* GitHub: NA -* Source code: https://github.com/cran/tis -* Date/Publication: 2021-09-28 19:50:02 UTC -* Number of recursive dependencies: 15 +#
+# +# * Version: 1.10.0 +# * GitHub: https://github.com/OakleyJ/SHELF +# * Source code: https://github.com/cran/SHELF +# * Date/Publication: 2024-05-07 14:20:03 UTC +# * Number of recursive dependencies: 126 +# +# Run `revdepcheck::cloud_details(, "SHELF")` for more info +# +#
+# +# ## Newly broken +# +# * checking re-building of vignette outputs ... NOTE +# ``` +# Error(s) in re-building vignettes: +# --- re-building ‘Dirichlet-elicitation.Rmd’ using rmarkdown +# ``` +``` + +# shinipsum (plot slots) + +# SimNPH (missing labels) + +# smallsets (patchwork) + +# spbal (empty sf) + +# spinifex (plotly) + +# sport (missing labels) + +# SqueakR (false positive) + +# statgenGWAS (device issue) + +# surveyexplorer (ggupset) + +# Sysrecon (patchwork) + +# tabledown (plotly) + +# TCIU (plotly) + +# tensorEVD (ggnewscale) + +# thematic (thematic) + +# tidybayes (ggdist) + +# tidycat (ggforce) + +# tidyCDISC (plotly) + +# tidydr (uses internals) + +# tidysdm (patchwork) + +# tidytreatment (ggdist) -Run `revdepcheck::cloud_details(, "tis")` for more info - -
+# timetk (plotly) -## Newly broken +# tinyarray (patchwork) -* checking examples ... ERROR - ``` - Running examples in ‘tis-Ex.R’ failed - The error most likely occurred in: - - > ### Name: fortify.tis - > ### Title: Fortify a tis object - > ### Aliases: fortify.tis - > - > ### ** Examples - > - > if(require("ggplot2") && require("reshape")) { - ... - 10. └─ggplot2 (local) FUN(X[[i]], ...) - 11. └─scale$transform_df(df = df) - 12. └─ggplot2 (local) transform_df(..., self = self) - 13. └─base::lapply(df[aesthetics], self$transform) - 14. └─ggplot2 (local) FUN(X[[i]], ...) - 15. └─ggplot2 (local) transform(..., self = self) - 16. └─transformation$transform(x) - 17. └─cli::cli_abort("{.fun transform_date} works with objects of class {.cls Date} only") - 18. └─rlang::abort(...) - Execution halted - ``` +# tornado (length 0 width) -## In both +# TOSTER (ggdist) -* checking package dependencies ... NOTE - ``` - Package which this enhances but not available for checking: ‘zoo’ - ``` +# TreatmentPatterns (plotly) -# UniprotR +# trelliscopejs (plotly) -
+# tricolore (ggtern) -* Version: 2.4.0 -* GitHub: https://github.com/Proteomicslab57357/UniprotR -* Source code: https://github.com/cran/UniprotR -* Date/Publication: 2024-03-05 15:10:02 UTC -* Number of recursive dependencies: 192 +# triptych (patchwork) -Run `revdepcheck::cloud_details(, "UniprotR")` for more info +# tsnet (ggdist) -
+# umiAnalyzer (plotly) -## Newly broken +# valr (missing labels) -* checking whether package ‘UniprotR’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘UniprotR’ - See ‘/tmp/workdir/UniprotR/new/UniprotR.Rcheck/00install.out’ for details. - ``` +# vivaldi (plotly) -# VALERIE +# vivid (ggnewscale) -
+# vvshiny (plotly) -* Version: 1.1.0 -* GitHub: NA -* Source code: https://github.com/cran/VALERIE -* Date/Publication: 2020-07-10 10:20:13 UTC -* Number of recursive dependencies: 133 +# wilson (plotly) -Run `revdepcheck::cloud_details(, "VALERIE")` for more info +# xaringanthemer (default access) -
- -## Newly broken - -* checking whether package ‘VALERIE’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘VALERIE’ - See ‘/tmp/workdir/VALERIE/new/VALERIE.Rcheck/00install.out’ for details. - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 9.6Mb - sub-directories of 1Mb or more: - extdata 8.7Mb - ``` - -# vannstats - -
- -* Version: 1.3.4.14 -* GitHub: NA -* Source code: https://github.com/cran/vannstats -* Date/Publication: 2023-04-15 04:30:02 UTC -* Number of recursive dependencies: 101 - -Run `revdepcheck::cloud_details(, "vannstats")` for more info - -
- -## Newly broken - -* checking whether package ‘vannstats’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘vannstats’ - See ‘/tmp/workdir/vannstats/new/vannstats.Rcheck/00install.out’ for details. - ``` - -# vici - -
- -* Version: 0.7.3 -* GitHub: https://github.com/sistm/vici -* Source code: https://github.com/cran/vici -* Date/Publication: 2024-02-02 16:20:02 UTC -* Number of recursive dependencies: 113 - -Run `revdepcheck::cloud_details(, "vici")` for more info - -
- -## Newly broken - -* checking whether package ‘vici’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘vici’ - See ‘/tmp/workdir/vici/new/vici.Rcheck/00install.out’ for details. - ``` - -# Wats - -
- -* Version: 1.0.1 -* GitHub: https://github.com/OuhscBbmc/Wats -* Source code: https://github.com/cran/Wats -* Date/Publication: 2023-03-10 22:50:05 UTC -* Number of recursive dependencies: 122 - -Run `revdepcheck::cloud_details(, "Wats")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘Wats-Ex.R’ failed - The error most likely occurred in: - - > ### Name: cartesian_periodic - > ### Title: Linear Plot with Periodic Elements - > ### Aliases: cartesian_periodic - > ### Keywords: Cartesian - > - > ### ** Examples - > - ... - 10. └─ggplot2 (local) FUN(X[[i]], ...) - 11. └─scale$transform_df(df = df) - 12. └─ggplot2 (local) transform_df(..., self = self) - 13. └─base::lapply(df[aesthetics], self$transform) - 14. └─ggplot2 (local) FUN(X[[i]], ...) - 15. └─ggplot2 (local) transform(..., self = self) - 16. └─transformation$transform(x) - 17. └─cli::cli_abort("{.fun transform_date} works with objects of class {.cls Date} only") - 18. └─rlang::abort(...) - Execution halted - ``` - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘mbr-figures.Rmd’ - ... - + dv_name = "birth_rate", center_function = stats::median, - + spread_function = h_sprea .... [TRUNCATED] - - > cartesian_rolling(ds_linear = portfolio_cartesian$ds_linear, - + x_name = "date", y_name = "birth_rate", stage_id_name = "stage_id", - + chang .... [TRUNCATED] - - When sourcing ‘mbr-figures.R’: - Error: `transform_date()` works with objects of class only - Execution halted - - ‘mbr-figures.Rmd’ using ‘UTF-8’... failed - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘mbr-figures.Rmd’ using rmarkdown - - Quitting from lines 135-165 [fig-2-individual-basic] (mbr-figures.Rmd) - Error: processing vignette 'mbr-figures.Rmd' failed with diagnostics: - `transform_date()` works with objects of class only - --- failed re-building ‘mbr-figures.Rmd’ - - SUMMARY: processing the following file failed: - ‘mbr-figures.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# xaringanthemer - -
- -* Version: 0.4.2 -* GitHub: https://github.com/gadenbuie/xaringanthemer -* Source code: https://github.com/cran/xaringanthemer -* Date/Publication: 2022-08-20 18:40:02 UTC -* Number of recursive dependencies: 75 - -Run `revdepcheck::cloud_details(, "xaringanthemer")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(xaringanthemer) - > - > test_check("xaringanthemer") - [ FAIL 1 | WARN 18 | SKIP 1 | PASS 308 ] - - ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ - ... - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-ggplot2.R:267:3'): theme_xaringan_restore_defaults() restores defaults ── - res$after_restore$line_colour (`actual`) not equal to res$original$colour (`expected`). - - `actual`: "#0088ff" - `expected`: "black" - - [ FAIL 1 | WARN 18 | SKIP 1 | PASS 308 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘xaringanthemer.Rmd’ - ... - Warning in file(con, "r") : - cannot open file './../man/fragments/_quick-intro.Rmd': No such file or directory - - Quitting from lines 43-43 [unnamed-chunk-2] (xaringanthemer.Rmd) - - When tangling ‘xaringanthemer.Rmd’: - Error: cannot open the connection - Execution halted - - ‘ggplot2-themes.Rmd’ using ‘UTF-8’... OK - ‘template-variables.Rmd’ using ‘UTF-8’... OK - ‘xaringanthemer.Rmd’ using ‘UTF-8’... failed - ``` +# yamlet (missing labels) diff --git a/tests/testthat/_snaps/coord-cartesian/clip-on-by-default-only-inside-visible.svg b/tests/testthat/_snaps/coord-cartesian/clip-on-by-default-only-inside-visible.svg index 6f424b0c4a..8532b083e3 100644 --- a/tests/testthat/_snaps/coord-cartesian/clip-on-by-default-only-inside-visible.svg +++ b/tests/testthat/_snaps/coord-cartesian/clip-on-by-default-only-inside-visible.svg @@ -27,14 +27,14 @@ -inside -inside -inside -inside -outside -outside -outside -outside +inside +inside +inside +inside +outside +outside +outside +outside clip on by default, only 'inside' visible diff --git a/tests/testthat/_snaps/coord-cartesian/clip-turned-off-both-inside-and-outside-visible.svg b/tests/testthat/_snaps/coord-cartesian/clip-turned-off-both-inside-and-outside-visible.svg index 89932b9196..b2120e5e14 100644 --- a/tests/testthat/_snaps/coord-cartesian/clip-turned-off-both-inside-and-outside-visible.svg +++ b/tests/testthat/_snaps/coord-cartesian/clip-turned-off-both-inside-and-outside-visible.svg @@ -20,14 +20,14 @@ -inside -inside -inside -inside -outside -outside -outside -outside +inside +inside +inside +inside +outside +outside +outside +outside clip turned off, both 'inside' and 'outside' visible diff --git a/tests/testthat/_snaps/coord-polar/bottom-half-circle-with-rotated-text.svg b/tests/testthat/_snaps/coord-polar/bottom-half-circle-with-rotated-text.svg index 30c4b0fc24..caa297b3f5 100644 --- a/tests/testthat/_snaps/coord-polar/bottom-half-circle-with-rotated-text.svg +++ b/tests/testthat/_snaps/coord-polar/bottom-half-circle-with-rotated-text.svg @@ -40,18 +40,18 @@ -cat -strawberry -cake -coffee -window -fluid -cat -strawberry -cake -coffee -window -fluid +cat +strawberry +cake +coffee +window +fluid +cat +strawberry +cake +coffee +window +fluid 1 2 3 diff --git a/tests/testthat/_snaps/geom-sf/labels-for-north-carolina.svg b/tests/testthat/_snaps/geom-sf/labels-for-north-carolina.svg index cf5ffdbbf2..f11f41251b 100644 --- a/tests/testthat/_snaps/geom-sf/labels-for-north-carolina.svg +++ b/tests/testthat/_snaps/geom-sf/labels-for-north-carolina.svg @@ -27,8 +27,8 @@ - -ashe + +ashe diff --git a/tests/testthat/_snaps/geom-sf/texts-for-north-carolina.svg b/tests/testthat/_snaps/geom-sf/texts-for-north-carolina.svg index 96ffe43109..ec2184a425 100644 --- a/tests/testthat/_snaps/geom-sf/texts-for-north-carolina.svg +++ b/tests/testthat/_snaps/geom-sf/texts-for-north-carolina.svg @@ -27,7 +27,7 @@ -ashe +ashe diff --git a/tests/testthat/_snaps/theme/theme-bw-large.svg b/tests/testthat/_snaps/theme/theme-bw-large.svg index 148d1a93ca..cbffb819ac 100644 --- a/tests/testthat/_snaps/theme/theme-bw-large.svg +++ b/tests/testthat/_snaps/theme/theme-bw-large.svg @@ -45,9 +45,9 @@ - - - + + + @@ -87,9 +87,9 @@ z - + - + a b theme_bw_large diff --git a/tests/testthat/_snaps/theme/theme-classic-large.svg b/tests/testthat/_snaps/theme/theme-classic-large.svg index 8a4643dba1..7105d5474b 100644 --- a/tests/testthat/_snaps/theme/theme-classic-large.svg +++ b/tests/testthat/_snaps/theme/theme-classic-large.svg @@ -27,9 +27,9 @@ - - - + + + @@ -70,9 +70,9 @@ z - + - + a b theme_classic_large diff --git a/tests/testthat/_snaps/theme/theme-dark-large.svg b/tests/testthat/_snaps/theme/theme-dark-large.svg index 9bad950947..f6f9c1058f 100644 --- a/tests/testthat/_snaps/theme/theme-dark-large.svg +++ b/tests/testthat/_snaps/theme/theme-dark-large.svg @@ -45,9 +45,9 @@ - - - + + + @@ -86,9 +86,9 @@ z - + - + a b theme_dark_large diff --git a/tests/testthat/_snaps/theme/theme-gray-large.svg b/tests/testthat/_snaps/theme/theme-gray-large.svg index a827864db6..4348638185 100644 --- a/tests/testthat/_snaps/theme/theme-gray-large.svg +++ b/tests/testthat/_snaps/theme/theme-gray-large.svg @@ -45,9 +45,9 @@ - - - + + + @@ -86,9 +86,9 @@ z - + - + a b theme_gray_large diff --git a/tests/testthat/_snaps/theme/theme-light-large.svg b/tests/testthat/_snaps/theme/theme-light-large.svg index 727f55ae02..29fc210917 100644 --- a/tests/testthat/_snaps/theme/theme-light-large.svg +++ b/tests/testthat/_snaps/theme/theme-light-large.svg @@ -45,9 +45,9 @@ - - - + + + @@ -87,9 +87,9 @@ z - + - + a b theme_light_large diff --git a/tests/testthat/_snaps/theme/theme-linedraw-large.svg b/tests/testthat/_snaps/theme/theme-linedraw-large.svg index 66998cd898..e2aadff6e7 100644 --- a/tests/testthat/_snaps/theme/theme-linedraw-large.svg +++ b/tests/testthat/_snaps/theme/theme-linedraw-large.svg @@ -45,9 +45,9 @@ - - - + + + @@ -87,9 +87,9 @@ z - + - + a b theme_linedraw_large diff --git a/tests/testthat/_snaps/theme/theme-minimal-large.svg b/tests/testthat/_snaps/theme/theme-minimal-large.svg index 4673e9cc60..8ec3b18625 100644 --- a/tests/testthat/_snaps/theme/theme-minimal-large.svg +++ b/tests/testthat/_snaps/theme/theme-minimal-large.svg @@ -43,9 +43,9 @@ - - - + + + @@ -71,8 +71,8 @@ x y z - - + + a b theme_minimal_large diff --git a/tests/testthat/_snaps/utilities-break.md b/tests/testthat/_snaps/utilities-break.md index c8115c4c48..31563a6cd7 100644 --- a/tests/testthat/_snaps/utilities-break.md +++ b/tests/testthat/_snaps/utilities-break.md @@ -1,4 +1,4 @@ -# cut_interval gives the correct +# cut_interval throws the correct error message Specify exactly one of `n` and `length`. diff --git a/tests/testthat/test-geom-.R b/tests/testthat/test-geom-.R index e0a0ca060a..6766178f22 100644 --- a/tests/testthat/test-geom-.R +++ b/tests/testthat/test-geom-.R @@ -6,18 +6,34 @@ test_that("aesthetic checking in geom throws correct errors", { expect_snapshot_error(check_aesthetics(aes, 4)) }) +test_that("get_geom_defaults can use various sources", { + + test <- get_geom_defaults(geom_point) + expect_equal(test$colour, "black") + + test <- get_geom_defaults(geom_point(colour = "red")) + expect_equal(test$colour, "red") + + test <- get_geom_defaults("point") + expect_equal(test$colour, "black") + + test <- get_geom_defaults(GeomPoint, theme(geom = element_geom("red"))) + expect_equal(test$colour, "red") +}) + test_that("geom defaults can be set and reset", { l <- geom_point() - test <- l$geom$use_defaults(data_frame0()) + orig <- l$geom$default_aes$colour + test <- get_geom_defaults(l) expect_equal(test$colour, "black") inv <- update_geom_defaults("point", list(colour = "red")) - test <- l$geom$use_defaults(data_frame0()) + test <- get_geom_defaults(l) expect_equal(test$colour, "red") - expect_equal(inv$colour, "black") + expect_equal(inv$colour, orig) inv <- update_geom_defaults("point", NULL) - test <- l$geom$use_defaults(data_frame0()) + test <- get_geom_defaults(l) expect_equal(test$colour, "black") expect_equal(inv$colour, "red") diff --git a/tests/testthat/test-stats.R b/tests/testthat/test-stats.R index 0739f78a6d..25c30e2fb1 100644 --- a/tests/testthat/test-stats.R +++ b/tests/testthat/test-stats.R @@ -47,7 +47,7 @@ test_that("erroneously dropped aesthetics are found and issue a warning", { # colour is dropped because group a's colour is not constant (GeomBar$default_aes$colour is NA) expect_true(all(is.na(b2$data[[1]]$colour))) # fill is dropped because group b's fill is not constant - expect_true(all(b2$data[[1]]$fill == GeomBar$default_aes$fill)) + expect_true(all(b2$data[[1]]$fill == "#595959FF")) # case 2-1) dropped partially with NA diff --git a/tests/testthat/test-theme.R b/tests/testthat/test-theme.R index 03f2a11d48..9c10202504 100644 --- a/tests/testthat/test-theme.R +++ b/tests/testthat/test-theme.R @@ -240,14 +240,12 @@ test_that("complete and non-complete themes interact correctly with ggplot objec expect_identical(pt, tt) p <- ggplot_build(base + theme(text = element_text(colour = 'red', face = 'italic'))) - expect_false(attr(p$plot$theme, "complete")) expect_equal(p$plot$theme$text$colour, "red") expect_equal(p$plot$theme$text$face, "italic") p <- ggplot_build(base + theme(text = element_text(colour = 'red')) + theme(text = element_text(face = 'italic'))) - expect_false(attr(p$plot$theme, "complete")) expect_equal(p$plot$theme$text$colour, "red") expect_equal(p$plot$theme$text$face, "italic") })