instructions.txt

1) download the data files from https://tinyurl.com/ay44c62r
2) unzip files.zip into the inputs folder
3) setup a virtual environment using virtualenv and requirements.txt:
	- virtualenv venv
	- source venv/bin/activate
	- pip install -r requirements.txt
4) resolve the venv/lib/python3.8/site-packages/mpltools/special/hinton.py set_axis_bgcolor issue by replacing
it with set_facecolor (see https://github.com/tonysyu/mpltools/issues/33 for the details)
5) run column dimension experiments using python -m experiments.reproduce_dimension_exps
    - note that we are not allowed to share the HES dataset. you can download it at https://tinyurl.com/ybbqu3n3
    if you would like to run the methods on the HES dataset.
    - installing CCUT, GQ and S-NER are complicated. please follow the corresponding instructions.
6) run unit identification experiments using python -m src.experiments.reproduce_cell_unit_exps