From b274891c8e386ed7d4f9ac9f774cf9796b04b77c Mon Sep 17 00:00:00 2001
From: Joris Vaillant
Date: Tue, 11 Feb 2025 10:03:21 +0100
Subject: [PATCH 1/4] cmake: Update jrl-cmake
---
cmake | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/cmake b/cmake
index 6b0564f4..2ede15d1 160000
--- a/cmake
+++ b/cmake
@@ -1 +1 @@
-Subproject commit 6b0564f45af29a90160aafdfd67eb7a07ace48ed
+Subproject commit 2ede15d1cb9d66401ba96788444ad64c44ffccd8
From 454e32dbd621b7c1479b9a521f62baf8ffd43217 Mon Sep 17 00:00:00 2001
From: Joris Vaillant
Date: Tue, 11 Feb 2025 12:07:19 +0100
Subject: [PATCH 2/4] pixi: Remove warnings
---
pixi.toml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/pixi.toml b/pixi.toml
index 0532ddf6..f10941af 100644
--- a/pixi.toml
+++ b/pixi.toml
@@ -47,9 +47,9 @@ configure = { cmd = [
"-DBUILD_WITH_CHOLMOD_SUPPORT=$EIGENPY_CHOLMOD_SUPPORT",
"-DBUILD_WITH_ACCELERATE_SUPPORT=$EIGENPY_ACCELERATE_SUPPORT",
] }
-build = { cmd = "cmake --build build --target all", depends_on = ["configure"] }
+build = { cmd = "cmake --build build --target all", depends-on = ["configure"] }
clean = { cmd = "rm -rf build" }
-test = { cmd = "ctest --test-dir build --output-on-failure", depends_on = [
+test = { cmd = "ctest --test-dir build --output-on-failure", depends-on = [
"build",
] }
From c068d32880b8ae824aea2154a84e2ab6e9decbf9 Mon Sep 17 00:00:00 2001
From: Joris Vaillant
Date: Tue, 11 Feb 2025 12:30:01 +0100
Subject: [PATCH 3/4] doxygen: Remove some legacy files and improve
configuration
---
doc/Doxyfile.extra.in | 37 +++++-
doc/additionalDoc/package.hh | 26 ----
doc/footer.html | 11 --
doc/header.html | 7 --
doc/package.css | 230 -----------------------------------
doc/pictures/HRP2.jpg | Bin 23613 -> 0 bytes
doc/pictures/footer.jpg | Bin 23613 -> 0 bytes
doc/pictures/footer.txt | 2 -
doc/pictures/soth.tif | Bin 120378 -> 0 bytes
9 files changed, 32 insertions(+), 281 deletions(-)
delete mode 100644 doc/additionalDoc/package.hh
delete mode 100644 doc/footer.html
delete mode 100644 doc/header.html
delete mode 100644 doc/package.css
delete mode 100644 doc/pictures/HRP2.jpg
delete mode 100644 doc/pictures/footer.jpg
delete mode 100644 doc/pictures/footer.txt
delete mode 100644 doc/pictures/soth.tif
diff --git a/doc/Doxyfile.extra.in b/doc/Doxyfile.extra.in
index d3290a4f..bbd3d3ae 100644
--- a/doc/Doxyfile.extra.in
+++ b/doc/Doxyfile.extra.in
@@ -1,7 +1,34 @@
-INPUT = @PROJECT_SOURCE_DIR@/src \
- @PROJECT_SOURCE_DIR@/doc/additionalDoc
-IMAGE_PATH = @PROJECT_SOURCE_DIR@/doc/pictures
+INPUT = @PROJECT_SOURCE_DIR@/doc \
+ @PROJECT_SOURCE_DIR@/include \
+ @PROJECT_SOURCE_DIR@/README.md
-FILE_PATTERNS = *.cc *.cpp *.h *.hpp *.hxx
+RECURSIVE = YES
-TAGFILES = \
+FILE_PATTERNS = *.cpp *.h *.hpp *.hxx
+
+EXTRACT_ALL = NO
+EXTRACT_ANON_NSPACES = NO
+
+ENABLE_PREPROCESSING = YES
+MACRO_EXPANSION = YES
+
+FULL_PATH_NAMES = YES
+EXCLUDE_SYMBOLS = std, *::internal, internal::*, *::internal::*
+
+INCLUDE_PATH = @PROJECT_SOURCE_DIR@/include
+
+GENERATE_TREEVIEW = YES
+
+VERBATIM_HEADERS = YES
+
+SHOW_FILES = YES
+SHOW_NAMESPACES = YES
+
+SOURCE_BROWSER = YES
+
+ALPHABETICAL_INDEX = YES
+
+USE_MDFILE_AS_MAINPAGE = README.md
+BUILTIN_STL_SUPPORT = YES
+HAVE_DOT = YES
+DOT_IMAGE_FORMAT = SVG
diff --git a/doc/additionalDoc/package.hh b/doc/additionalDoc/package.hh
deleted file mode 100644
index 2ce3915d..00000000
--- a/doc/additionalDoc/package.hh
+++ /dev/null
@@ -1,26 +0,0 @@
-/*
- * Copyright 2010,
- * François Bleibel,
- * Olivier Stasse,
- *
- * CNRS/AIST
- *
- * This file is part of sot-dynamic.
- * sot-dynamic is free software: you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation, either version 3 of
- * the License, or (at your option) any later version.
- * sot-dynamic is distributed in the hope that it will be
- * useful, but WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License for more details. You should
- * have received a copy of the GNU Lesser General Public License along
- * with sot-dynamic. If not, see .
- */
-
-/** \mainpage
-\section soth_section_introduction Introduction
-
-The soth package is ...
-
-**/
diff --git a/doc/footer.html b/doc/footer.html
deleted file mode 100644
index 535d304e..00000000
--- a/doc/footer.html
+++ /dev/null
@@ -1,11 +0,0 @@
-
-
-
- 
-
soth library documentation
-
-
-
-
-
-
diff --git a/doc/header.html b/doc/header.html
deleted file mode 100644
index ca3e578a..00000000
--- a/doc/header.html
+++ /dev/null
@@ -1,7 +0,0 @@
-
-