From ebdc3f3184a2df3d3036240a94b9abcf8d9e55be Mon Sep 17 00:00:00 2001
From: "snakedeploy-bot[bot]"
 <115615832+snakedeploy-bot[bot]@users.noreply.github.com>
Date: Fri, 22 Nov 2024 01:45:06 +0000
Subject: [PATCH] perf: autobump bio/biobambam2/bamsormadup (#3480)

Automatic bump of bio/biobambam2/bamsormadup.

---------

Co-authored-by: snakedeploy-bot[bot] <115615832+snakedeploy-bot[bot]@users.noreply.github.com>
---
 .../bamsormadup/environment.linux-64.pin.txt  | 56 +++++++++++--------
 bio/biobambam2/bamsormadup/environment.yaml   |  2 +-
 2 files changed, 33 insertions(+), 25 deletions(-)

diff --git a/bio/biobambam2/bamsormadup/environment.linux-64.pin.txt b/bio/biobambam2/bamsormadup/environment.linux-64.pin.txt
index 625a918fed7..abc2a4f29fb 100644
--- a/bio/biobambam2/bamsormadup/environment.linux-64.pin.txt
+++ b/bio/biobambam2/bamsormadup/environment.linux-64.pin.txt
@@ -1,33 +1,41 @@
 # This file may be used to create an environment using:
 # $ conda create --name <env> --file <this file>
 # platform: linux-64
+# created-by: conda 24.9.2
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
-https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda#a73ecd2988327ad4c8f2c331482917f2
-https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_2.conda#9172c297304f2a20134fc56c97fbe229
-https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_2.conda#e2042154faafe61969556f28bade94b9
+https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.8.30-hbcca054_0.conda#c27d1c142233b5bc9ca570c6e2e0c244
+https://conda.anaconda.org/conda-forge/linux-64/libboost-headers-1.85.0-ha770c72_4.conda#00e4848983222729ccb7c69f1039f4b9
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h77fa898_1.conda#cc3573974587f12dda90d96e3e55a702
 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_2.conda#c28003b0be0494f9a7664389146716ff
-https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54
-https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.20.1-hd590300_1.conda#2facbaf5ee1a56967aecaee89799160e
-https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda#cc47e1facc155f91abd89b11e48e72ff
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h77fa898_1.conda#3cb76c3f10d3bc7f1105b2fc9db984df
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.3-heb4867d_0.conda#09a6c610d002e54e18353c06ef61a253
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_1.conda#e39480b9ca41323497b05492a63bc35b
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-hc0a3c3a_1.conda#234a5554c53625688d51062645337328
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.4.0-hb9d3cd8_0.conda#23cc74f77eb99315c0360ec3533147a9
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda#62ee74e96c5ebb0af99386de58cf9553
 https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3
-https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.19-hd590300_0.conda#1635570038840ee3f9c71d22aa5b8b6d
-https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2#6f8720dff19e17ce5d48cfe7f3d2f0a3
-https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
-https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-h59595ed_1.conda#e05410383ad9c39aaa76675a7661db24
-https://conda.anaconda.org/conda-forge/linux-64/openssl-3.1.4-hd590300_0.conda#412ba6938c3e2abaca8b1129ea82e238
-https://conda.anaconda.org/conda-forge/linux-64/snappy-1.1.8-he1b5a44_3.tar.bz2#83f1dc295c711bdbaf97e1f3bedf2f52
+https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.20-hd590300_0.conda#8e88f9389f1165d7c0936fe40d9a9a79
+https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055
+https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
+https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.2.0-h4852527_1.conda#8371ac6457591af2cf6159439c1fd051
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-he02047a_1.conda#70caf8bb6cf39a0b6b7efc885f51c0fe
+https://conda.anaconda.org/conda-forge/linux-64/nettle-3.9.1-h7ab15ed_0.conda#2bf1915cc107738811368afcb0993a59
 https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0
+https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-hac33072_2.conda#c94a5994ef49749880a8139cf9afcbe1
+https://conda.anaconda.org/conda-forge/linux-64/icu-75.1-he02047a_0.conda#8b189310083baabfb622af68fd9d3ae3
 https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1
-https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.55.1-h47da74e_0.conda#a802251d1eaeeae041c867faf0f94fa8
-https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe
-https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-hd590300_5.conda#68c34ec6149623be41a1933ab996a209
-https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.5-hfc55251_0.conda#04b88013080254850d6c01ed54810589
-https://conda.anaconda.org/conda-forge/linux-64/boost-cpp-1.78.0-h2c5509c_4.conda#417a9d724dc4b651f4a711d3aa3694e3
-https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.2-h659d440_0.conda#cd95826dbd331ed1be26bdf401432844
-https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.4.0-hca28451_0.conda#1158ac1d2613b28685644931f11ee807
-https://conda.anaconda.org/conda-forge/linux-64/curl-8.4.0-hca28451_0.conda#2bcf7689cae931dd35d9a45626f49fce
-https://conda.anaconda.org/bioconda/linux-64/staden_io_lib-1.14.14-h0191234_7.tar.bz2#6e0d09d5ed6b77a78c48e5be30d70d02
-https://conda.anaconda.org/bioconda/linux-64/libmaus2-2.0.810-h05617a9_4.tar.bz2#1a01fbd9922fa10056eca9816ab894a2
-https://conda.anaconda.org/bioconda/linux-64/biobambam-2.0.183-h4ac6f70_3.tar.bz2#679768a5b2b79a198cc0a57e4ac427d2
+https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.64.0-h161d5f1_0.conda#19e57602824042dfd0446292ef90488b
+https://conda.anaconda.org/conda-forge/linux-64/snappy-1.1.8-he1b5a44_3.tar.bz2#83f1dc295c711bdbaf97e1f3bedf2f52
+https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.6-ha6fb4c9_0.conda#4d056880988120e29d75bfff282e0f45
+https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f43953b7d3fb3aaa1d0d0723d91e368
+https://conda.anaconda.org/conda-forge/linux-64/libboost-1.85.0-h0ccab89_4.conda#4da1690badd566fc1041f91cd5655727
+https://conda.anaconda.org/conda-forge/linux-64/xerces-c-3.2.5-h988505b_2.conda#9dda9667feba914e0e80b95b82f7402b
+https://conda.anaconda.org/conda-forge/linux-64/libboost-devel-1.85.0-h00ab1b0_4.conda#ded76b8670cb505006c891c4d45844a5
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.10.1-hbbe4b11_0.conda#6e801c50a40301f6978c53976917b277
+https://conda.anaconda.org/conda-forge/linux-64/boost-cpp-1.85.0-h3c6214e_4.conda#cc4533eabf5caa8b4fbb56418d1617a9
+https://conda.anaconda.org/bioconda/linux-64/staden_io_lib-1.15.0-hbc8f6b7_1.tar.bz2#f4fb988b2e07e9425b74e12d2e1b049a
+https://conda.anaconda.org/bioconda/linux-64/libmaus2-2.0.813-heefa079_0.tar.bz2#62d380c07b389b74c301580cff0912c2
+https://conda.anaconda.org/bioconda/linux-64/biobambam-2.0.185-h02148a2_0.tar.bz2#aaa114d0dc3f75f6984cdcd32f4ebe9c
diff --git a/bio/biobambam2/bamsormadup/environment.yaml b/bio/biobambam2/bamsormadup/environment.yaml
index e29d2599ab9..70aa256301f 100644
--- a/bio/biobambam2/bamsormadup/environment.yaml
+++ b/bio/biobambam2/bamsormadup/environment.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - biobambam =2.0.183
+  - biobambam =2.0.185