circos.conf

karyotype = XXX

chromosomes_units = 1000
chromosome_display_default = yes

<ideogram>

<spacing>
default = 0.005r
</spacing>

radius           = 0.7r
thickness        = 20p
fill             = yes  
stroke_color     = dgrey
stroke_thickness = 2p

show_label = yes
label_font = default
label_radius = 1r + 75p
label_size = 30

</ideogram>

show_ticks          = yes
show_tick_labels    = yes

<ticks>

radius           = 1r
color            = black
thickness        = 2p
multiplier       = 1e-3

format           = %d

<tick>
spacing        = 5u
size           = 10p
</tick>

<tick>
spacing        = 25u
size           = 15p
show_label     = yes
label_size     = 20p
label_offset   = 10p
format         = %d
</tick>

</ticks>

<links>

<link>
ribbon        = yes
file          = XXX		#links
color         = black_a5
radius        = 0.4r
bezier_radius = 0.1r
thickness     = 5
</link>

</links>

<plots>

<plot>

file = XXX		#histogram
type = histogram
r0   = 0.85r
r1   = 0.97r
min  = 0
max  = 100

color      = white
fill_color = XXX		#stacked_colors
thickness  = 0

sort_bin_values = no
extend_bin      = no

<axes>
<axis>
color     = lgrey
thickness = 1
spacing   = 0.1r
</axis>
</axes>

</plot>

<plot>

file = XXX		#depth
type = histogram
r0   = 0.7r
r1   = 0.83r
min  = 0
max  = 1500

color      = white
fill_color = lblue
thickness  = 0

sort_bin_values = no
extend_bin      = no

<axes>
<axis>
color     = lgrey
thickness = 1
spacing   = 0.1r
</axis>
</axes>

</plot>

<plot>
type             = text
color            = black
file             = XXX		#text

r0 = 0.4r
r1 = 0.95r

label_snuggle  = yes
show_links     = yes
link_dims      = 4p,4p,8p,4p,4p
link_thickness = 2p
link_color     = red

label_size   = 24p
label_font   = condensed

padding  = 0p
rpadding = 0p

</plot>
</plots>

<image>
<<include etc/image.conf>>                
</image>

<<include etc/housekeeping.conf>>

<<include etc/colors_fonts_patterns.conf>>