globals.cpp

/* globals.h: declare the global variables that are used through the whole program. ****************************************************/
#include      <map>                                                                                                                    //
#include   <string>                                                                                                                    //
#include <stddef.h>                                                                                                                    //
                                                                                                                                       //
#define INF      9999999999
#define MARGIN 0.0000000001                                                                                                                                       
using namespace std;   

struct BPINFO
{
    string         chr;
    unsigned long  leftp;
    unsigned long  rightp;
    unsigned long  leftMax;
    unsigned long  rightMin;
    double         score;
    string         order; // allele transition order, either "12" or "21"
    string         bpline;// raw bp info line
    string         ovline;// bp info line overlapping with the above, the smaller interval used as a representative
};