Trac #17020: Update jmol to the latest version

Upstream tarball: http://sage.sagedev.org/home/vbraun/upstream/jmol-14.2
.4_2014.08.03.tar.bz2

URL: http://trac.sagemath.org/17020
Reported by: vbraun
Ticket author(s): Jonathan Gutow, Volker Braun
Reviewer(s): Karl-Dieter Crisman, Jonathan Gutow, Volker Braun

Author: Release Manager

build/pkgs/jmol/SPKG.txt

@@ -2,10 +2,10 @@
 
 == Description ==
 
-This updates jar files necessary for Jmol
-to operate from the command line and the Notebook.
-It does not contain the Notebook javascript library
-jmol_lib.js or changes to Notebook or Sage code.
+This provides files necessary for Jmol(java) and JSmol
+(javascript) to operate from the command line and the 
+Notebook. It does not contain the Notebook javascript 
+library jmol_lib.js or changes to Notebook or Sage code.
 
 == License ==
 
@@ -23,78 +23,28 @@ GPLv2+
 
 == Dependencies ==
 
- * Sage Notebook (sagenb)
+No build-time dependencies.
 
-== Changelog ==
-=== jmol-12.3.27.p3 (Jonathan Gutow, Sept 15, 2012) ===
+The commandline jmol requires java at runtime.
 
-  * switch to #!/usr/bin/env bash in testjava.sh
+== Special Build Instructions ==
 
-=== jmol-12.3.27.p2 (Jonathan Gutow, July 14, 2012) ===
+First, unpack the upstream release (actual version number will of
+course differ):
 
-  * Fix not exiting with code 1 when java not available.
+$ unzip ~/Download/Jmol-14.2.4_2014.08.03-binary.zip 
+$ cd jmol-14.2.4_2014.08.03/
 
-=== jmol-12.3.27.p1 (Jonathan Gutow, July 12, 2012) ===
+Extract and then delete the contained jsmol.zip
 
- *  update testjava.sh to check java versions (now requires
-    versions 1.5 - 1.7)
+$ unzip jsmol.zip
+$ rm jsmol.zip
 
-=== jmol-12.3.27.p0 (Jonathan Gutow, May 27, 2012) ===
+Delete unnecessary (?) files in subdirectories
 
- * update to Jmol-12.3.27 included fixes to the headless JmolData.jar
-   allowing it to generate images.
- * Adds testjava.sh to the jmol directory for checking if java
-   is installed.
+$ rm -rf jsmol/data jsmol/php
 
-=== jmol-12.2.21.p0 (Jonathan Gutow, April 8, 2012) ===
+Tar up the remaining files
 
- * update to Jmol-12.2.21 includes updates to .jar files necessary
-   for using a headless Jmol to generate static images server-side.
-
-=== jmol-12.0.45.p4 (Jason Grout, February 4, 2012) ===
-
- * make the SAGE_LOCAL/bin/jmol script executable
-
-=== jmol-12.0.45.p3 (Dan Drake, Jason Grout, January 11, 2012) ===
-
- * improvements to spkg-install and SPKG.txt.
-
-=== jmol-12.0.45.p2 (Jonathan Gutow, July 18, 2011) ===
-
- * added patched launch script jmol to spkg repository.
-
-=== jmol-12.0.45.p1 (Jonathan Gutow, June 24, 2011) ===
-
- * added signed applet to spkg and patched Jmol.js to allow on the fly
-   switching to the signed applet.
-
-=== jmol-12.0.45.p0 (Jonathan Gutow, June 17, 2011) ===
-
- * refactored to more standard Sage spkg organization and
-   naming. First package designed to be part of base install.
-
-=== jmol-1.1.7 (Jonathan Gutow, June 15, 2011) ===
-
- * for Flask notebook moves Jmol to SAGE_ROOT/local/share
-
-=== jmol-1.1.6 (Jonathan Gutow, June 14, 2011) ===
-
- * adds Jmol.help and sage.mnu back into appletweb directory.  Updates
-   Jmol to 12.0.45
-
-=== jmol-1.1.5 (Jonathan Gutow, March 22, 2011) ===
-
- * removes jmol_lib.js and notebook_lib.js so that they can be tracked
-   using mercurial.  This package now only updates Jmol.js and the
-   JmolXXX.jar (binary) files to Jmol 12.0.35
-
-=== jmol-1.1.4 (Jonathan Gutow, January 22, 2011) ===
-
- * Fixes to jmol_lib.js to accommodate vocabulary changes in SAGE.
-
- * updates to Jmol 12.0.30 which includes bug fixes to the script
-   engine.
-
- * (1.1.3)-Fixes to .spkg to accommodate change in notebook code in
-   the SAGE directory. Code cleanup in jmol_lib.js and changes to
-   allow updates to Jmol.js to have an effect.
+$ cd ..
+$ tar cjf jmol-14.2.4_2014.08.03.tar.bz2 jmol-14.2.4_2014.08.03/

build/pkgs/jmol/checksums.ini

@@ -1,4 +1,4 @@
 tarball=jmol-VERSION.tar.bz2
-sha1=e2a6ed355948a106c8d574922a7254b337e8f8a3
-md5=450d4a6d803177ef3257f250044eebf1
-cksum=372208435
+sha1=0496d92d75efb91c2b332f59be48c0ee6a12a314
+md5=acc6c39a4b7787f53657310e9252fbf9
+cksum=389669432

build/pkgs/jmol/package-version.txt

@@ -1 +1 @@
-12.3.27.p3
+14.2.4_2014.08.03