diff --git a/build/pkgs/nauty/checksums.ini b/build/pkgs/nauty/checksums.ini index 644f4b75146..a9dd1246e91 100644 --- a/build/pkgs/nauty/checksums.ini +++ b/build/pkgs/nauty/checksums.ini @@ -1,5 +1,5 @@ tarball=nautyVERSION.tar.gz -sha1=c9fd2b4c99b8c624e430f3f4e1492a4219e3495e -md5=2ead635a417e20a18b3aabee83fac1ef -cksum=718823455 -upstream_url=http://pallini.di.uniroma1.it/nauty27r1.tar.gz +sha1=10c39117c55c69c18c6a107110e7c08f3d873652 +md5=7a82f4209f5d552da3078c67e5af872e +cksum=2164796643 +upstream_url=https://pallini.di.uniroma1.it/nauty2_8_6.tar.gz diff --git a/build/pkgs/nauty/package-version.txt b/build/pkgs/nauty/package-version.txt index 9a8067baa68..b6b3dcc5aa0 100644 --- a/build/pkgs/nauty/package-version.txt +++ b/build/pkgs/nauty/package-version.txt @@ -1 +1 @@ -27r1.p1 +2.8.6.p0 diff --git a/build/pkgs/nauty/patches/nauty-2.8.6-gentreeg-gentourng.patch b/build/pkgs/nauty/patches/nauty-2.8.6-gentreeg-gentourng.patch new file mode 100644 index 00000000000..322b25326ee --- /dev/null +++ b/build/pkgs/nauty/patches/nauty-2.8.6-gentreeg-gentourng.patch @@ -0,0 +1,144 @@ +From edb0474a4db8e69f971e4eebe18716309f5a7bb3 Mon Sep 17 00:00:00 2001 +From: Michael Orlitzky +Date: Tue, 17 Jan 2023 19:44:49 -0500 +Subject: [PATCH 1/1] Upstream fixes for gentreeg and gentourng. + +https://mailman.anu.edu.au/pipermail/nauty/2023-January/000903.html +--- + gentourng.c | 2 +- + gentreeg.c | 95 ++++++++++++++++++++++++++++------------------------- + 2 files changed, 51 insertions(+), 46 deletions(-) + +diff --git a/gentourng.c b/gentourng.c +index 634e5e8..5c7ffff 100644 +--- a/gentourng.c ++++ b/gentourng.c +@@ -1408,7 +1408,7 @@ PLUGIN_INIT + (*outproc)(outfile,g,1); + } + } +- else ++ else if (!connec || maxn != 2) + { + makeleveldata(); + +diff --git a/gentreeg.c b/gentreeg.c +index 946d5f8..15bf87b 100644 +--- a/gentreeg.c ++++ b/gentreeg.c +@@ -1,4 +1,4 @@ +-/* gentree version 1.3; Brendan McKay Oct 2022 */ ++/* gentree version 1.4; Brendan McKay Dec 2022 */ + /* This program is a wrapper for the program FreeTrees.c written + * by Gang Li & Frank Ruskey. See below for their original + * comments. */ +@@ -32,49 +32,54 @@ Counts for n=1..45: + 1: 1 + 2: 1 + 3: 1 +- 4: 1 +- 5: 2 +- 6: 3 +- 7: 6 +- 8: 11 +- 9: 23 +-10: 47 +-11: 106 +-12: 235 +-13: 551 +-14: 1301 +-15: 3159 +-16: 7741 +-17: 19320 +-18: 48629 +-19: 123867 +-20: 317955 +-21: 823065 +-22: 2144505 +-23: 5623756 +-24: 14828074 +-25: 39299897 +-26: 104636890 +-27: 279793450 +-28: 751065460 +-29: 2023443032 +-30: 5469566585 +-31: 14830871802 +-32: 40330829030 +-33: 109972410221 +-34: 300628862480 +-35: 823779631721 +-36: 2262366343746 +-37: 6226306037178 +-38: 17169677490714 +-39: 47436313524262 +-40: 131290543779126 +-41: 363990257783343 +-42: 1010748076717151 +-43: 2810986483493475 +-44: 7828986221515605 +-45: 21835027912963086 +-********************************/ ++ 4: 2 ++ 5: 3 ++ 6: 6 ++ 7: 11 ++ 8: 23 ++ 9: 47 ++10: 106 ++11: 235 ++12: 551 ++13: 1301 ++14: 3159 ++15: 7741 ++16: 19320 ++17: 48629 ++18: 123867 ++19: 317955 ++20: 823065 ++21: 2144505 ++22: 5623756 ++23: 14828074 ++24: 39299897 ++25: 104636890 ++26: 279793450 ++27: 751065460 ++28: 2023443032 ++29: 5469566585 ++30: 14830871802 ++31: 40330829030 ++32: 109972410221 ++33: 300628862480 ++34: 823779631721 ++35: 2262366343746 ++36: 6226306037178 ++37: 17169677490714 ++38: 47436313524262 ++39: 131290543779126 ++40: 363990257783343 ++41: 1010748076717151 ++42: 2810986483493475 ++43: 7828986221515605 ++44: 21835027912963086 ++45: 60978390985918906 ++46: 170508699155987862 ++47: 477355090753926460 ++48: 1337946100045842285 ++49: 3754194185716399992 ++50: 10545233702911509534 ++*******************************/ + + /* Comments on original program by original authors */ + /*==============================================================*/ +@@ -676,7 +681,7 @@ PLUGIN_INIT + } + else if (nv == 2) + { +- if (res == 0 && maxdeg >= 1 && mindiam <= 1 && maxdiam >= 2) ++ if (res == 0 && maxdeg >= 1 && mindiam <= 1 && maxdiam >= 1) + { + par[1] = 0; + par[2] = 1; +-- +2.38.2 + diff --git a/build/pkgs/nauty/spkg-configure.m4 b/build/pkgs/nauty/spkg-configure.m4 index d986105f2e3..4d5bbcf2091 100644 --- a/build/pkgs/nauty/spkg-configure.m4 +++ b/build/pkgs/nauty/spkg-configure.m4 @@ -1,8 +1,12 @@ # We don't use the "converseg" program, but we need to ensure that we # only detect nauty >= 2.6 because we use the digraph6 format from # that version -- and converseg was added in nauty-2.6. +# +# We also don't use the "genposetg" program (added in nauty 2.8) yet. +# We require it here to prepare Sage for the use of the major new features +# added in 2.7 and 2.8 (https://pallini.di.uniroma1.it/changes24-28.txt). AC_DEFUN([SAGE_TEST_NAUTY_PROGS], [ - m4_foreach([nautyprog], [directg, gentourng, geng, genbg, gentreeg, converseg], [ + m4_foreach([nautyprog], [directg, gentourng, geng, genbg, gentreeg, converseg, genposetg], [ AC_PATH_PROG([$2]nautyprog, [[$1]nautyprog]) AS_IF([test x$[$2]nautyprog = x], [sage_spkg_install_nauty=yes]) ]) diff --git a/build/pkgs/nauty/spkg-install.in b/build/pkgs/nauty/spkg-install.in index 6b25ac9d2ea..cf685ba5370 100644 --- a/build/pkgs/nauty/spkg-install.in +++ b/build/pkgs/nauty/spkg-install.in @@ -7,10 +7,10 @@ sdh_make # No install target so we resort to manual copy PROGRAMS=" -addedgeg amtog biplabg catg complg converseg copyg countg cubhamg deledgeg -delptg directg dreadnaut dretodot dretog genbg genbgL geng genquarticg genrang -genspecialg gentourng gentreeg hamheuristic labelg linegraphg listg multig -newedgeg pickg planarg ranlabg shortg showg subdivideg twohamg vcolg +addedgeg addptg amtog ancestorg assembleg biplabg catg complg converseg copyg countg cubhamg deledgeg +delptg dimacs2g directg dreadnaut dretodot dretog edgetransg genbg genbgL geng gengL genposetg genquarticg genrang +genspecialg gentourng gentreeg hamheuristic labelg linegraphg listg multig nbrhoodg +newedgeg pickg planarg productg ranlabg shortg showg subdivideg twohamg underlyingg vcolg watercluster2 NRswitchg" sdh_install $PROGRAMS "$SAGE_LOCAL/bin"