cavada.dock

FROM ubuntu:xenial
MAINTAINER Razvan Sultana <razvan.sultana@gmail.com>

ENV TERM xterm-256color
ENV DEBIAN_FRONTEND noninteractive

# Install basic packages
RUN set -ex; \
    apt-get update; \
    apt-get install -y \
        git \
        ssh \
        vim \
        tree \
        nmap \
        htop \
        wget \
        bzip2 \
        python-dev \
        software-properties-common; \
    apt-get clean

# Add CRAN repository for R
RUN set -ex; \
    add-apt-repository 'deb http://cran.rstudio.com/bin/linux/ubuntu xenial/'; \
    apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9

# Install mysql, R and dependencies for shiny and cavada
RUN set -ex; \
    apt-get update; \
    apt-get install -y \
        mysql-server \
        supervisor \
        r-base \
        r-cran-rmysql \
        libcurl4-openssl-dev \
        libssl-dev \
        gdebi-core \
        texlive-latex-base \
        texlive-latex-recommended \
        texlive-latex-extra; \
    apt-get clean

# Install R packages necessary for shiny and cavada
RUN set -ex; \
    R -e "install.packages(c('knitr','rmarkdown','devtools','log4r'), repos='http://cran.rstudio.com/')"; \
    R -e "devtools::install_version('shiny', version = '0.10.0', repos='http://cran.rstudio.com/')"; \
    R -e "devtools::install_github('rstudio/shiny-incubator',ref='5a78877')"

# Install shiny-server
RUN set -ex; \
    wget https://download3.rstudio.org/ubuntu-12.04/x86_64/shiny-server-1.4.2.786-amd64.deb; \
    gdebi -n shiny-server-1.4.2.786-amd64.deb

RUN mkdir -p /etc/supervisor/conf.d
ADD ./supervisor-shinyserver.conf /etc/supervisor/conf.d/shinyserver.conf

EXPOSE 3838

# Install cavada code
RUN set -ex; \
    cd /srv/shiny-server; \
    rm -rf cavada; \
    git clone https://github.com/razsultana/cavada; \
    cd cavada; \
    git checkout v1.0; \
    chown -R shiny.shiny /srv/shiny-server/cavada

# Copy the MySQL config scripts
ADD ./config_mysql.sh /config_mysql.sh
ADD ./config_root_account.sh /config_root_account.sh
ADD ./config_credentials.sh /config_credentials.sh
RUN chmod 755 /*.sh

ADD ./supervisor-mysql.conf /etc/supervisor/conf.d/mysql.conf

# Allow external connections
RUN sed -i 's/bind-address/#bind-address/g' /etc/mysql/mysql.conf.d/mysqld.cnf
# Configure default DB
RUN /config_mysql.sh

EXPOSE 3306

# Run supervisor which runs mysql and shiny-server
CMD ["supervisord", "-n"]