.gitignore

# Excluding all images except the input 2D .dcm images corresponding to the ETH Zurich dataset
/Image_prediction/input_imgs/*
!/Image_prediction/input_imgs/2D images/
/Image_prediction/input_imgs/2D images/*
!/Image_prediction/input_imgs/2D images/2. sq sl010 sag Xcs=125/
!/Image_prediction/input_imgs/2D images/3. sq sl010 sag Xcs=80/
!/Image_prediction/input_imgs/2D images/4. sq sl014 sag Xcs=165/
!/Image_prediction/input_imgs/2D images/5. sq sl014 sag Xcs=95/

# Ignoring txt files inside the "2D images" subdireectory
/Image_prediction/input_imgs/2D images/*.txt
/Image_prediction/input_imgs/2D images/**/*.txt

# Excluding directories corresponding to temporary files
/Image_prediction/tmp_figs/
/Image_prediction/tmp_imgs/
/Image_prediction/tmp_vars/
/Image_prediction/tmp_txt_files/
/Image_prediction/tests

# Excluding files corresponding to data curation (not in the Github repo)
/Image_prediction/mat2Dseq_from_complex_npy3Dseq.py
/Image_prediction/create_4Dmri_dataset.py
/Image_prediction/dcm2Dseq_from_real_mha_dcm3Dseq.m
/Image_prediction/0. 2D image sequence extraction
create_4Dmri_dataset_spec-file.txt

# Excluding temporary folders
/Time_series_forecasting/b. Prediction results (figures)
/Time_series_forecasting/c. Prediction results (images)
/Time_series_forecasting/d. RNN variables (temp)
/Time_series_forecasting/e. Log txt files

# Excluding gifs inside the visualisation folder except a few ones
/Image_prediction/visualization/*.gif
!/Image_prediction/visualization/2._sq_sl010_sag_Xcs=125_SnAp-1_k=12_q=110_eta=0.02_sg=0.02_h=6_3_cpts_t=181_to_200_cropped.gif
!/Image_prediction/visualization/3._sq_sl010_sag_Xcs=80_SnAp-1_k=30_q=70_eta=0.02_sg=0.02_h=6_4_cpts_t=181_to_200_cropped.gif
!/Image_prediction/visualization/4. sq sl014 sag Xcs=165 SnAp-1 k=6 q=110 eta=0.01 sg=0.02 h=6 3 cpts_t=181_to_200_cropped.gif
!/Image_prediction/visualization/5. sq sl014 sag Xcs=95 SnAp-1 k=6 q=110 eta=0.01 sg=0.02 h=6 2 cpts_t=181_to_200_cropped.gif

# File extensions to exclude
*.bak
*.asv
*.jpg