-
Notifications
You must be signed in to change notification settings - Fork 62
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
add s3 prefix and allow for future years
- Loading branch information
1 parent
d87c7ea
commit 166954e
Showing
1 changed file
with
16 additions
and
7 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,20 +1,29 @@ | ||
import os | ||
from os.path import join | ||
|
||
import s3fs | ||
|
||
from pangeo_forge_recipes.patterns import pattern_from_file_sequence | ||
from pangeo_forge_recipes.recipes.reference_hdf_zarr import HDFReferenceRecipe | ||
|
||
url_base = 's3://noaa-cdr-sea-surface-temp-whoi-pds/data/' | ||
|
||
years = range(1988, 2022) | ||
file_list = [] | ||
|
||
fs = s3fs.S3FileSystem(anon=True) | ||
|
||
for year in years: | ||
file_list += sorted( | ||
filter(lambda x: x.endswith('.nc'), fs.ls(url_base + str(year), detail=False)) | ||
) | ||
|
||
pattern = pattern_from_file_sequence(file_list, 'time', nitems_per_file=1) | ||
def is_nc(x): | ||
return x.endswith('.nc') | ||
|
||
|
||
def add_s3(x): | ||
return 's3://' + x | ||
|
||
|
||
years_folders = fs.ls(join(url_base)) | ||
years = list(map(lambda x: os.path.basename(x), years_folders)) | ||
|
||
for year in years: | ||
file_list += sorted(filter(is_nc, map(add_s3, fs.ls(join(url_base, str(year)), detail=False)))) | ||
pattern = pattern_from_file_sequence(file_list, 'time', nitems_per_file=1) | ||
recipe = HDFReferenceRecipe(pattern, netcdf_storage_options={'anon': True}) |