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Neutral mutation rate argument error #552

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V-JJ opened this issue Mar 16, 2025 · 0 comments
Open

Neutral mutation rate argument error #552

V-JJ opened this issue Mar 16, 2025 · 0 comments

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@V-JJ
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V-JJ commented Mar 16, 2025

Hi!

I'm trying to run EDTA using a custom Neutral mutation rate value, "4.07e-9". But I'm getting the following error:

Argument "4.07eM-bM-^HM-^R9" isn't numeric in multiplication (*) at /myuser/anaconda3/envs/EDTA/share/LTR_retriever/bin/LTR.identifier.pl line 236.

This is my command

GenomeFile=MySpecies.fasta
RepeatModelerCSTlib=Mylib.fasta
NeutralMutationRate="4.07e−9" 

EDTA.pl --genome $GenomeFile --rmlib $RepeatModelerlib --overwrite 1 --sensitive 0 --anno 1 --u $NeutralMutationRate --threads $NSLOTS

Right now I'm trying to get throught by simly replacing the default Neutral Mutational Rate variable value in the "LTRidentifier.pl" script, specifically this line my $miu="1.3e-8"; #neutral mutation rate, default: 1.3e-8 (rice) per bp per ya. So, my comand in this case is the same but without --u.

Any help is appreciated,
Thanks,

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