24task 22failed？

[Xoey0314]

I submitted 24 EDTA tasks to identify transposons in 24 genomes, but only 2 tasks successfully ran. The remaining tasks encountered an error: "Error: The RMblast engine is not installed in RepeatMasker!"

[oushujun]

That's wierd. If it's installtion issue you should not have any genomes complete. What version was it and did you test it with the test data?

Shujun

[Xoey0314]

Hi,
thanks for your reply, i used 2.1.0. And i checked with the test data, it no "Error: The RMblast engine is not installed in RepeatMasker!". But TIR_learner had erro like #539, such as :
Traceback (most recent call last):
File "/data/mambaforge/pkgs/edta-2.1.0-hdfd78af_1/share/EDTA/bin/TIR-Learner2.5/Module3_New/getDataset.py", line 12, in
from tensorflow.python.keras.utils import to_categorical
File "/data/mambaforge/envs/edta2.1.0/lib/python3.6/site-packages/tensorflow/init.py", line 28, in
from tensorflow.python import pywrap_tensorflow # pylint: disable=unused-import
File "/data/mambaforge/envs/edta2.1.0/lib/python3.6/site-packages/tensorflow/python/init.py", line 63, in
from tensorflow.python.framework.framework_lib import * # pylint: disable=redefined-builtin
File "/data/mambaforge/envs/edta2.1.0/lib/python3.6/site-packages/tensorflow/python/framework/framework_lib.py", line 25, in
from tensorflow.python.framework.ops import Graph
File "/data/mambaforge/envs/edta2.1.0/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 54, in
from tensorflow.python.platform import app
File "/data/mambaforge/envs/edta2.1.0/lib/python3.6/site-packages/tensorflow/python/platform/app.py", line 23, in
from absl.app import run as _run
File "/data/mambaforge/envs/edta2.1.0/lib/python3.6/site-packages/absl/app.py", line 37, in
from absl import flags
File "/data/mambaforge/envs/edta2.1.0/lib/python3.6/site-packages/absl/flags/init.py", line 35, in
from absl.flags import _argument_parser
File "/data/mambaforge/envs/edta2.1.0/lib/python3.6/site-packages/absl/flags/_argument_parser.py", line 82, in
class ArgumentParser(Generic[_T], metaclass=_ArgumentParserCache):
TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases
cat: '-+-DTA.fa': No such file or directory
cat: '-+-DTC.fa': No such file or directory
cat: '-+-DTH.fa': No such file or directory
cat: '-+-DTM.fa': No such file or directory
cat: '-+-DTT.fa': No such file or directory
cat: '-+-NonTIR.fa': No such file or directory
cat: '-+--+-.gff3': No such file or directory
rm: cannot remove '-+--+-.gff3': No such file or directory

And in fact, the TIR_result of 2 tasks (running successfully ) is empty.
I test 2.2.0 and 2.0.1 also had this erro.

I also want to know，which version do you recommend using more now.

Xoey