final result

[PengfeiInTuebingen]

Hi @oushujun,

Very cool TE annotation tool.

One said now EDTA is at version2, i was introduced to use it for my algae genomes, i installed it by conda, i tested it, it worked ok, i got output files as expected, like:

[$]~>  ls
Alyrata.test.fa  genome.cds.list     genome.fa.mod               genome.fa.mod.EDTA.final        genome.fa.mod.EDTA.raw          genome.fa.mod.EDTA.TElib.fa        genome.fa.mod.RM2.raw.fa  rice7.0.0.liban
Col.test.fa      genome.exclude.bed  genome.fa.mod.EDTA.anno     genome.fa.mod.EDTA.intact.fa    genome.fa.mod.EDTA.TEanno.gff3  genome.fa.mod.EDTA.TElib.novel.fa  Ler.test.fa
genome.cds.fa    genome.fa           genome.fa.mod.EDTA.combine  genome.fa.mod.EDTA.intact.gff3  genome.fa.mod.EDTA.TEanno.sum   genome.fa.mod.MAKER.masked         README.txt

but without the summary pdf file, i think it's ok, so i continue to work on own genome, my genome size is ~850Mb, contains 75% of repeats, EDTA run for over a week, finally i got the results but no "EDTA.TEanno.sum" or "EDTA.TEanno.gff3" , attached is the log file, do you have any suggestions for this?

Best,
PF

logo925240.TXT

[oushujun]

Hello, I updated EDTA for better recognize algae and fungus specific TE families. Please clone the latest version of EDTA and rerun steps after final (eg, --step final --anno 1 --overwrite 1). You may want to back up existing results.

Thanks!
Shujun