You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I installed EDTA-2.2.2 via mamba and encountered an error message saying LTR_FINDER_parallel cannot be installed because of incompatibility with edta-2.2.2.
The error message was as below.
ClobberError: This transaction has incompatible packages due to a shared path.
packages: bioconda/noarch::ltr_finder_parallel-1.1-hdfd78af_1, bioconda/noarch::edta-2.2.2-hdfd78af_0
path: 'bin/LTR_FINDER_parallel
After installation is finished, there is a binary file of LTR_FINDER_parallel but nothing in ~/miniforge3/envs/EDTA/share/EDTA/bin/.
So when I try to execute LTR_FINDER_parallel, it says
Can't open perl script "/home/naitok785/miniforge3/envs/test/share/EDTA/bin/LTR_FINDER_parallel/LTR_FINDER_parallel": No such file or directory
I managed to have EDTA work by removing the LTR_FINDER_parallel binary form the ~/miniforge3/envs/EDTA/bin, git cloned LTR_FINDER_parallel myself and soft-linked the cloned binary and bin directory to the ~/miniforge3/envs/EDTA/bin, as like
cd ~/miniforge3/envs/EDTA/bin
ln -s ~/LTR_FINDER_parallel/LTR_FINDER_parallel .
ln -s ~/LTR_FINDER_paralle/bin .
Thank you anyway, I have been a long-time user of this fantastic pipeline!
The text was updated successfully, but these errors were encountered:
I installed EDTA-2.2.2 via mamba and encountered an error message saying LTR_FINDER_parallel cannot be installed because of incompatibility with edta-2.2.2.
The error message was as below.
After installation is finished, there is a binary file of LTR_FINDER_parallel but nothing in ~/miniforge3/envs/EDTA/share/EDTA/bin/.
So when I try to execute LTR_FINDER_parallel, it says
Can't open perl script "/home/naitok785/miniforge3/envs/test/share/EDTA/bin/LTR_FINDER_parallel/LTR_FINDER_parallel": No such file or directory
I managed to have EDTA work by removing the LTR_FINDER_parallel binary form the ~/miniforge3/envs/EDTA/bin, git cloned LTR_FINDER_parallel myself and soft-linked the cloned binary and bin directory to the ~/miniforge3/envs/EDTA/bin, as like
Thank you anyway, I have been a long-time user of this fantastic pipeline!
The text was updated successfully, but these errors were encountered: