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softmasking #339

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bijendrabio opened this issue Mar 6, 2023 · 2 comments
Closed

softmasking #339

bijendrabio opened this issue Mar 6, 2023 · 2 comments
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@bijendrabio
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bijendrabio commented Mar 6, 2023 •
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Hello,
Curious if there a way to generate softmasked genome as output, or convert the hardmasked output to softmask format using EDTA?
Does EDTA generates corresponding gff3 file for *.mod.MAKER.masked file?

Kindly suggest!

Regards,
B
@oushujun
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oushujun commented Mar 9, 2023

#166

@oushujun oushujun added the duplicate This issue or pull request already exists label Mar 9, 2023
@oushujun oushujun closed this as completed Mar 9, 2023
@oushujun
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oushujun commented Mar 9, 2023

No, EDTA does not generate gff3 file for *.mod.MAKER.masked file, but you may generate it yourself, which is a simple length filter for entries >1000bp from the TEanno.gff3 file.

Shujun

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