diff --git a/src/driver/compile.ml b/src/driver/compile.ml
index 1eace17a98..893110dd07 100644
--- a/src/driver/compile.ml
+++ b/src/driver/compile.ml
@@ -225,7 +225,7 @@ let sherlodoc_index_one ~output_dir (index : Odoc_unit.index) =
   Sherlodoc.index ~format:`js ~inputs ~dst ();
   rel_path
 
-let html_generate output_dir linked =
+let html_generate ~occurrence_file output_dir linked =
   let tbl = Hashtbl.create 10 in
   let _ = OS.Dir.create output_dir |> Result.get_ok in
   Sherlodoc.js Fpath.(output_dir // Sherlodoc.js_file);
@@ -235,7 +235,10 @@ let html_generate output_dir linked =
         ({ pkg_args = { pages; libs }; output_file; json; search_dir = _ } as
          index :
           Odoc_unit.index) =
-      let () = Odoc.compile_index ~json ~output_file ~libs ~docs:pages () in
+      let () =
+        Odoc.compile_index ~json ~occurrence_file ~output_file ~libs ~docs:pages
+          ()
+      in
       sherlodoc_index_one ~output_dir index
     in
     match Hashtbl.find_opt tbl index.output_file with
diff --git a/src/driver/compile.mli b/src/driver/compile.mli
index 772e5cfee6..e7809b89cb 100644
--- a/src/driver/compile.mli
+++ b/src/driver/compile.mli
@@ -18,4 +18,4 @@ type linked
 
 val link : compiled list -> linked list
 
-val html_generate : Fpath.t -> linked list -> unit
+val html_generate : occurrence_file:Fpath.t -> Fpath.t -> linked list -> unit
diff --git a/src/driver/odoc.ml b/src/driver/odoc.ml
index 9fe020cab3..846dc4709b 100644
--- a/src/driver/odoc.ml
+++ b/src/driver/odoc.ml
@@ -138,13 +138,20 @@ let link ?(ignore_output = false) ~input_file:file ?output_file ~includes ~docs
     Cmd_outputs.(
       add_prefixed_output cmd link_output (Fpath.to_string file) lines)
 
-let compile_index ?(ignore_output = false) ~output_file ~json ~docs ~libs () =
+let compile_index ?(ignore_output = false) ~output_file ?occurrence_file ~json
+    ~docs ~libs () =
   let docs = doc_args docs in
   let libs = lib_args libs in
   let json = if json then Cmd.v "--json" else Cmd.empty in
+  let occ =
+    match occurrence_file with
+    | None -> Cmd.empty
+    | Some f -> Cmd.(v "--occurrences" % p f)
+  in
   let cmd =
     Cmd.(
-      !odoc % "compile-index" %% json %% v "-o" % p output_file %% docs %% libs)
+      !odoc % "compile-index" %% json %% v "-o" % p output_file %% docs %% libs
+      %% occ)
   in
   let desc =
     Printf.sprintf "Generating index for %s" (Fpath.to_string output_file)
@@ -212,11 +219,15 @@ let support_files path =
   let desc = "Generating support files" in
   Cmd_outputs.submit desc cmd None
 
-let count_occurrences output =
+let count_occurrences ~input ~output =
   let open Cmd in
-  let cmd = !odoc % "count-occurrences" % "-I" % "." % "-o" % p output in
+  let input = Cmd.of_values Fpath.to_string input in
+  let output_c = v "-o" % p output in
+  let cmd = !odoc % "count-occurrences" %% input %% output_c in
   let desc = "Counting occurrences" in
-  Cmd_outputs.submit desc cmd None
+  let lines = Cmd_outputs.submit desc cmd None in
+  Cmd_outputs.(
+    add_prefixed_output cmd generate_output (Fpath.to_string output) lines)
 
 let source_tree ?(ignore_output = false) ~parent ~output file =
   let open Cmd in
diff --git a/src/driver/odoc.mli b/src/driver/odoc.mli
index 6c45f940b6..acf7aa19af 100644
--- a/src/driver/odoc.mli
+++ b/src/driver/odoc.mli
@@ -42,6 +42,7 @@ val link :
 val compile_index :
   ?ignore_output:bool ->
   output_file:Fpath.t ->
+  ?occurrence_file:Fpath.t ->
   json:bool ->
   docs:(string * Fpath.t) list ->
   libs:(string * Fpath.t) list ->
@@ -76,6 +77,6 @@ val html_generate_source :
 
 val support_files : Fpath.t -> string list
 
-val count_occurrences : Fpath.t -> string list
+val count_occurrences : input:Fpath.t list -> output:Fpath.t -> unit
 val source_tree :
   ?ignore_output:bool -> parent:string -> output:Fpath.t -> Fpath.t -> unit
diff --git a/src/driver/odoc_driver.ml b/src/driver/odoc_driver.ml
index ec032ffc4e..e01bdee765 100644
--- a/src/driver/odoc_driver.ml
+++ b/src/driver/odoc_driver.ml
@@ -577,7 +577,14 @@ let run libs verbose packages_dir odoc_dir odocl_dir html_dir stats nb_workers
             all
         in
         let linked = Compile.link compiled in
-        let () = Compile.html_generate html_dir linked in
+        let occurrence_file =
+          let output =
+            Fpath.( / ) odoc_dir "occurrences-all.odoc-occurrences"
+          in
+          let () = Odoc.count_occurrences ~input:[ odoc_dir ] ~output in
+          output
+        in
+        let () = Compile.html_generate ~occurrence_file html_dir linked in
         let _ = Odoc.support_files html_dir in
         ())
       (fun () -> render_stats env nb_workers)
diff --git a/src/driver/test/config_file/test_odoc_driver/test_odoc_driver.opam b/src/driver/test/config_file/test_odoc_driver/test_odoc_driver.opam
index b296c11175..75de6b8893 100644
--- a/src/driver/test/config_file/test_odoc_driver/test_odoc_driver.opam
+++ b/src/driver/test/config_file/test_odoc_driver/test_odoc_driver.opam
@@ -1,14 +1,5 @@
 # This file is generated by dune, edit dune-project instead
 opam-version: "2.0"
-synopsis: "A short synopsis"
-description: "A longer description"
-maintainer: ["Maintainer Name"]
-authors: ["Author Name"]
-license: "LICENSE"
-tags: ["topics" "to describe" "your" "project"]
-homepage: "https://github.com/username/reponame"
-doc: "https://url/to/documentation"
-bug-reports: "https://github.com/username/reponame/issues"
 depends: [
   "ocaml"
   "dune" {>= "3.16"}
@@ -28,4 +19,3 @@ build: [
     "@doc" {with-doc}
   ]
 ]
-dev-repo: "git+https://github.com/username/reponame.git"
diff --git a/src/odoc/bin/main.ml b/src/odoc/bin/main.ml
index 6e1e686884..bafb996fb0 100644
--- a/src/odoc/bin/main.ml
+++ b/src/odoc/bin/main.ml
@@ -1438,16 +1438,10 @@ end
 module Occurrences = struct
   open Or_error
 
-  let has_occurrences_prefix input =
-    input |> Fs.File.basename |> Fs.File.to_string
-    |> Astring.String.is_prefix ~affix:"occurrences-"
-
   let dst_of_string s =
     let f = Fs.File.of_string s in
-    if not (Fs.File.has_ext ".odoc" f) then
-      Error (`Msg "Output file must have '.odoc' extension.")
-    else if not (has_occurrences_prefix f) then
-      Error (`Msg "Output file must be prefixed with 'occurrences-'.")
+    if not (Fs.File.has_ext ".odoc-occurrences" f) then
+      Error (`Msg "Output file must have '.odoc-occurrences' extension.")
     else Ok f
 
   module Count = struct
@@ -1467,10 +1461,19 @@ module Occurrences = struct
         let doc = "Include hidden identifiers in the table" in
         Arg.(value & flag & info ~docs ~doc [ "include-hidden" ])
       in
+      let input =
+        let doc =
+          "Directories to recursively traverse, agregating occurrences from \
+           $(i,impl-*.odocl) files. Can be present several times."
+        in
+        Arg.(
+          value
+          & pos_all (convert_directory ()) []
+          & info ~docs ~docv:"DIR" ~doc [])
+      in
       Term.(
         const handle_error
-        $ (const count $ odoc_file_directories $ dst $ warnings_options
-         $ include_hidden))
+        $ (const count $ input $ dst $ warnings_options $ include_hidden))
 
     let info ~docs =
       let doc =
diff --git a/src/odoc/occurrences.ml b/src/odoc/occurrences.ml
index 696ab8c71d..bd8f91561a 100644
--- a/src/odoc/occurrences.ml
+++ b/src/odoc/occurrences.ml
@@ -1,18 +1,8 @@
 open Or_error
-
-(* Copied from ocaml 5.0 String module *)
-let string_starts_with ~prefix s =
-  let open String in
-  let len_s = length s and len_pre = length prefix in
-  let rec aux i =
-    if i = len_pre then true
-    else if unsafe_get s i <> unsafe_get prefix i then false
-    else aux (i + 1)
-  in
-  len_s >= len_pre && aux 0
+open Astring
 
 let handle_file file ~f =
-  if string_starts_with ~prefix:"impl-" (Fpath.filename file) then
+  if String.is_prefix ~affix:"impl-" (Fpath.filename file) then
     Odoc_file.load file |> function
     | Error _ as e -> e
     | Ok unit' -> (
diff --git a/test/occurrences/double_wrapped.t/run.t b/test/occurrences/double_wrapped.t/run.t
index 8a883e67a0..1f1e71d24e 100644
--- a/test/occurrences/double_wrapped.t/run.t
+++ b/test/occurrences/double_wrapped.t/run.t
@@ -50,11 +50,11 @@ and a hashtable for each compilation unit.
   $ mv impl-main__A.odocl main__A
   $ mv impl-main__B.odocl main__B
   $ mv impl-main__C.odocl main__C
-  $ odoc count-occurrences -I main -o occurrences-main.odoc
-  $ odoc count-occurrences -I main__ -o occurrences-main__.odoc
-  $ odoc count-occurrences -I main__A -o occurrences-main__A.odoc
-  $ odoc count-occurrences -I main__B -o occurrences-main__B.odoc
-  $ odoc count-occurrences -I main__C -o occurrences-main__C.odoc
+  $ odoc count-occurrences main -o main.odoc-occurrences
+  $ odoc count-occurrences main__ -o main__.odoc-occurrences
+  $ odoc count-occurrences main__A -o main__A.odoc-occurrences
+  $ odoc count-occurrences main__B -o main__B.odoc-occurrences
+  $ odoc count-occurrences main__C -o main__C.odoc-occurrences
 
 The occurrences_print executable, available only for testing, unmarshal the file
 and prints the number of occurrences in a readable format.
@@ -65,18 +65,18 @@ Uses of C are not counted, since the canonical destination (Main.C, generated by
 Uses of B.Z are not counted since they go to a hidden module.
 Uses of values Y.x and Z.y (in b.ml) are not counted since they come from a "local" module.
 
-  $ occurrences_print occurrences-main.odoc | sort
+  $ occurrences_print main.odoc-occurrences | sort
   Main was used directly 0 times and indirectly 2 times
   Main.A was used directly 1 times and indirectly 0 times
   Main.B was used directly 1 times and indirectly 0 times
 
-  $ occurrences_print occurrences-main__.odoc | sort
+  $ occurrences_print main__.odoc-occurrences | sort
 
 A only uses "persistent" values: one it defines itself.
-  $ occurrences_print occurrences-main__A.odoc | sort
+  $ occurrences_print main__A.odoc-occurrences | sort
 
 "Aliased" values are not counted since they become persistent
-  $ occurrences_print occurrences-main__B.odoc | sort
+  $ occurrences_print main__B.odoc-occurrences | sort
   Main was used directly 0 times and indirectly 7 times
   Main.A was used directly 2 times and indirectly 5 times
   Main.A.(||>) was used directly 1 times and indirectly 0 times
@@ -85,7 +85,7 @@ A only uses "persistent" values: one it defines itself.
   Main.A.x was used directly 1 times and indirectly 0 times
 
 "Aliased" values are not counted since they become persistent
-  $ occurrences_print occurrences-main__C.odoc | sort
+  $ occurrences_print main__C.odoc-occurrences | sort
   Main was used directly 0 times and indirectly 2 times
   Main.A was used directly 1 times and indirectly 1 times
   Main.A.x was used directly 1 times and indirectly 0 times
@@ -93,13 +93,13 @@ A only uses "persistent" values: one it defines itself.
 Now we can merge all tables
 
   $ cat > files.map << EOF
-  > occurrences-main__A.odoc
-  > occurrences-main__B.odoc
-  > occurrences-main__C.odoc
+  > main__A.odoc-occurrences
+  > main__B.odoc-occurrences
+  > main__C.odoc-occurrences
   > EOF
-  $ odoc aggregate-occurrences occurrences-main.odoc occurrences-main__.odoc --file-list files.map -o occurrences-aggregated.odoc
+  $ odoc aggregate-occurrences main.odoc-occurrences main__.odoc-occurrences --file-list files.map -o aggregated.odoc-occurrences
 
-  $ occurrences_print occurrences-aggregated.odoc | sort > all_merged
+  $ occurrences_print aggregated.odoc-occurrences | sort > all_merged
   $ cat all_merged
   Main was used directly 0 times and indirectly 11 times
   Main.A was used directly 4 times and indirectly 6 times
@@ -111,14 +111,14 @@ Now we can merge all tables
 
 Compare with the one created directly with all occurrences:
 
-  $ odoc count-occurrences -I . -o occurrences-all.odoc
-  $ occurrences_print occurrences-all.odoc | sort > directly_all
+  $ odoc count-occurrences . -o all.odoc-occurrences
+  $ occurrences_print all.odoc-occurrences | sort > directly_all
   $ diff all_merged directly_all
 
 We can also include hidden ids:
 
-  $ odoc count-occurrences -I main__B -o occurrences-b.odoc --include-hidden
-  $ occurrences_print occurrences-b.odoc | sort
+  $ odoc count-occurrences main__B -o b.odoc-occurrences --include-hidden
+  $ occurrences_print b.odoc-occurrences | sort
   Main was used directly 0 times and indirectly 7 times
   Main.A was used directly 2 times and indirectly 5 times
   Main.A.(||>) was used directly 1 times and indirectly 0 times
@@ -129,8 +129,8 @@ We can also include hidden ids:
   Main__.C was used directly 1 times and indirectly 1 times
   Main__.C.y was used directly 1 times and indirectly 0 times
 
-  $ odoc count-occurrences -I . -o occurrences-all.odoc --include-hidden
-  $ occurrences_print occurrences-all.odoc | sort
+  $ odoc count-occurrences . -o all.odoc-occurrences --include-hidden
+  $ occurrences_print all.odoc-occurrences | sort
   Main was used directly 0 times and indirectly 11 times
   Main.A was used directly 4 times and indirectly 6 times
   Main.A.(||>) was used directly 1 times and indirectly 0 times
@@ -149,7 +149,7 @@ We can use the generated table when generating the json output:
 
   $ odoc link -I . main.odoc
 
-  $ odoc compile-index --json -o index.json --occurrences occurrences-all.odoc main.odocl
+  $ odoc compile-index --json -o index.json --occurrences all.odoc-occurrences main.odocl
 
   $ cat index.json | jq sort | jq '.[]' -c
   {"id":[{"kind":"Root","name":"Main"}],"doc":"Handwritten top-level module","kind":{"kind":"Module"},"display":{"url":"Main/index.html","html":"<code class=\"entry-kind\">mod</code><code class=\"entry-title\"><span class=\"entry-name\">Main</span></code><div class=\"entry-comment\"><div><p>Handwritten top-level module</p></div></div>"},"occurrences":{"direct":0,"indirect":11}}