From af434a298821f2d15088eb4e2798027d8670ccd8 Mon Sep 17 00:00:00 2001 From: miltoncamacho <70858549+miltoncamacho@users.noreply.github.com> Date: Wed, 30 Oct 2024 11:20:19 -0600 Subject: [PATCH] MAINT: Update `niworkflows` version to 1.11.0 Update `niworkflows` version to 1.11.0. Fixes: ``` (sdcflows) root@91f133b4405b:/tmp# sdcflows /bids-input /bids-output participant --debug 241030-17:10:41,542 cli IMPORTANT: Running SDCFlows 2.10.0: * BIDS dataset path: /bids-input. * Output folder: /bids-output. * Analysis levels: ['participant']. Traceback (most recent call last): File "/opt/conda/envs/sdcflows/bin/sdcflows", line 8, in sys.exit(main()) File "/opt/conda/envs/sdcflows/lib/python3.10/site-packages/sdcflows/cli/main.py", line 178, in main "plugin": MultiProcPlugin( File "/opt/conda/envs/sdcflows/lib/python3.10/site-packages/niworkflows/engine/plugin.py", line 416, in __init__ from mriqc import config ModuleNotFoundError: No module named 'mriqc' ``` reported by GitHub user @miltoncamacho. Update `requirements.txt` and `min-requirements.txt` by running `.maint/update_requirements.py`. Co-authored-by: miltoncamacho <70858549+miltoncamacho@users.noreply.github.com> --- min-requirements.txt | 15 ++++++++------- pyproject.toml | 2 +- requirements.txt | 17 +++++++++-------- 3 files changed, 18 insertions(+), 16 deletions(-) diff --git a/min-requirements.txt b/min-requirements.txt index c18a3e04ea..626bac5b5a 100644 --- a/min-requirements.txt +++ b/min-requirements.txt @@ -1,14 +1,15 @@ # Auto-generated by .maint/update_requirements.py +acres==0.2.0 attrs==20.1.0 -nibabel==3.1.0 +nibabel==3.0 nipype==1.8.5 -traits<6.4 migas==0.4.0 -niworkflows==1.7.0 -nitransforms==23.0.1 -numpy==1.21.0 +nireports==24.1.0 +niworkflows==1.11.0 +nitransforms==24.1.0 +numpy==1.22 pybids==0.16.4 scikit-image==0.18 scipy==1.8.1 -templateflow -toml +templateflow==23.1 +toml==0.10 diff --git a/pyproject.toml b/pyproject.toml index 7625657b1b..a083e0bb87 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -28,7 +28,7 @@ dependencies = [ "nipype >= 1.8.5", "migas >= 0.4.0", "nireports >= 24.1.0", - "niworkflows >= 1.7.0", + "niworkflows >= 1.11.0", "nitransforms >= 24.1.0", "numpy >= 1.22", "pybids >= 0.16.4", diff --git a/requirements.txt b/requirements.txt index 898616b40d..6dade0b7a8 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,14 +1,15 @@ # Auto-generated by .maint/update_requirements.py +acres>=0.2.0 attrs>=20.1.0 -nibabel>=3.1.0 -nipype<2.0,>=1.8.5 -traits<6.4 +nibabel>=3.0 +nipype>=1.8.5 migas>=0.4.0 -niworkflows>=1.7.0 -nitransforms>=23.0.1 -numpy>=1.21.0 +nireports>=24.1.0 +niworkflows>=1.11.0 +nitransforms>=24.1.0 +numpy>=1.22 pybids>=0.16.4 scikit-image>=0.18 scipy>=1.8.1 -templateflow -toml +templateflow>=23.1 +toml>=0.10