From afb95b14c9d01163af4403e384c4d4624e88462b Mon Sep 17 00:00:00 2001
From: Guoying Qi <729395+gq1@users.noreply.github.com>
Date: Wed, 9 Mar 2022 17:17:10 +0000
Subject: [PATCH 1/2] update arima container location

---
 modules/arima/2readsbamcombiner/main.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/modules/arima/2readsbamcombiner/main.nf b/modules/arima/2readsbamcombiner/main.nf
index 2e6b1d47984..f134a0c2a62 100644
--- a/modules/arima/2readsbamcombiner/main.nf
+++ b/modules/arima/2readsbamcombiner/main.nf
@@ -2,12 +2,12 @@ process ARIMA_2READSBAMCOMBINER {
     tag "$meta.id"
     label 'process_low'
 
-    def version = '0.001-c20'
+    def version = '0.001-c24'
 
     if (params.enable_conda) {
         exit 1, "Conda environments cannot be used when using the arima two reads bam combiner. Please use docker or singularity containers."
     }
-    container "quay.io/tol/arima:${version}"
+    container "quay.io/sanger-tol/arima:${version}"
 
     input:
     tuple val(meta), path(bams)

From 4ca1db216d079567352b8bfdcac6053f6782eff7 Mon Sep 17 00:00:00 2001
From: Guoying Qi <729395+gq1@users.noreply.github.com>
Date: Wed, 9 Mar 2022 17:35:40 +0000
Subject: [PATCH 2/2] update md5 because arima version changed

---
 tests/modules/arima/2readsbamcombiner/test.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/modules/arima/2readsbamcombiner/test.yml b/tests/modules/arima/2readsbamcombiner/test.yml
index bf77c30cb37..18bb4703fb5 100644
--- a/tests/modules/arima/2readsbamcombiner/test.yml
+++ b/tests/modules/arima/2readsbamcombiner/test.yml
@@ -7,4 +7,4 @@
     - path: output/arima/test_combined.bam
       md5sum: 649656a618e77df9f7f10fb15453404b
     - path: output/arima/versions.yml
-      md5sum: a57922b9d3900c7eca763068837596c2
+      md5sum: faa9c484ed76034aef650970837d9e83