From 56e5143fbf3d14b944183df461e5c0903ac7faea Mon Sep 17 00:00:00 2001 From: maxulysse Date: Fri, 6 Oct 2023 12:25:48 +0200 Subject: [PATCH] update snapshots --- .github/workflows/ci.yml | 2 +- ...sra_default_parameters.nf.test => main.nf.test} | 0 ...t_parameters.nf.test.snap => main.nf.test.snap} | 14 +++++++++++++- .../sra_custom_ena_metadata_fields.nf.test.snap | 14 +++++++++++++- .../tests/sra_force_sratools_download.nf.test.snap | 14 +++++++++++++- .../sra_nf_core_pipeline_atacseq.nf.test.snap | 14 +++++++++++++- .../tests/sra_nf_core_pipeline_rnaseq.nf.test.snap | 14 +++++++++++++- .../sra_nf_core_pipeline_taxprofiler.nf.test.snap | 14 +++++++++++++- .../sra_nf_core_pipeline_viralrecon.nf.test.snap | 14 +++++++++++++- .../sra/tests/sra_skip_fastq_download.nf.test.snap | 14 +++++++++++++- 10 files changed, 105 insertions(+), 9 deletions(-) rename workflows/sra/tests/{sra_default_parameters.nf.test => main.nf.test} (100%) rename workflows/sra/tests/{sra_default_parameters.nf.test.snap => main.nf.test.snap} (75%) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 30656e1a..68e2773c 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -15,7 +15,7 @@ on: env: NXF_ANSI_LOG: false - NFTEST_VER: "0.8.0-rc2" + NFTEST_VER: "0.8.0" concurrency: group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}" diff --git a/workflows/sra/tests/sra_default_parameters.nf.test b/workflows/sra/tests/main.nf.test similarity index 100% rename from workflows/sra/tests/sra_default_parameters.nf.test rename to workflows/sra/tests/main.nf.test diff --git a/workflows/sra/tests/sra_default_parameters.nf.test.snap b/workflows/sra/tests/main.nf.test.snap similarity index 75% rename from workflows/sra/tests/sra_default_parameters.nf.test.snap rename to workflows/sra/tests/main.nf.test.snap index edb662a2..955dd72a 100644 --- a/workflows/sra/tests/sra_default_parameters.nf.test.snap +++ b/workflows/sra/tests/main.nf.test.snap @@ -12,6 +12,12 @@ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], "3": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], + "4": [ "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9", "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8", "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206", @@ -25,6 +31,12 @@ "mappings": [ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], + "sample_mappings": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], "samplesheet": [ "samplesheet.csv:md5,c1104c2edfc663b103f79b0551450192" ], @@ -38,6 +50,6 @@ ] } ], - "timestamp": "2023-09-25T12:00:37.501679" + "timestamp": "2023-10-06T12:18:32.149462" } } \ No newline at end of file diff --git a/workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test.snap b/workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test.snap index 7a7df129..143375ac 100644 --- a/workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test.snap +++ b/workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test.snap @@ -12,6 +12,12 @@ "id_mappings.csv:md5,e8a7d8effe4af1d999dc26cf92cf6621" ], "3": [ + [ + "multiqc_config.yml:md5,b1c25951b237552448e878f7c9dc4235", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], + "4": [ "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9", "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8", "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206", @@ -25,6 +31,12 @@ "mappings": [ "id_mappings.csv:md5,e8a7d8effe4af1d999dc26cf92cf6621" ], + "sample_mappings": [ + [ + "multiqc_config.yml:md5,b1c25951b237552448e878f7c9dc4235", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], "samplesheet": [ "samplesheet.csv:md5,d161b1a26b415a61064d8c558c9695c5" ], @@ -38,6 +50,6 @@ ] } ], - "timestamp": "2023-09-25T11:58:11.85816" + "timestamp": "2023-10-06T12:10:32.762201" } } \ No newline at end of file diff --git a/workflows/sra/tests/sra_force_sratools_download.nf.test.snap b/workflows/sra/tests/sra_force_sratools_download.nf.test.snap index 91eec432..5cb1876c 100644 --- a/workflows/sra/tests/sra_force_sratools_download.nf.test.snap +++ b/workflows/sra/tests/sra_force_sratools_download.nf.test.snap @@ -12,6 +12,12 @@ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], "3": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], + "4": [ "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9", "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8", "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206", @@ -24,6 +30,12 @@ "mappings": [ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], + "sample_mappings": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], "samplesheet": [ "samplesheet.csv:md5,c1104c2edfc663b103f79b0551450192" ], @@ -36,6 +48,6 @@ ] } ], - "timestamp": "2023-09-25T12:08:28.465466" + "timestamp": "2023-10-06T12:24:57.695874" } } \ No newline at end of file diff --git a/workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test.snap index 4560b05b..60cd3444 100644 --- a/workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test.snap +++ b/workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test.snap @@ -12,6 +12,12 @@ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], "3": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], + "4": [ "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9", "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8", "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206", @@ -25,6 +31,12 @@ "mappings": [ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], + "sample_mappings": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], "samplesheet": [ "samplesheet.csv:md5,46752dd6abac80b59573910f7ce4babe" ], @@ -38,6 +50,6 @@ ] } ], - "timestamp": "2023-09-25T11:53:25.411769" + "timestamp": "2023-10-06T12:03:19.401141" } } \ No newline at end of file diff --git a/workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test.snap index 26357aa5..a0c20a40 100644 --- a/workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test.snap +++ b/workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test.snap @@ -12,6 +12,12 @@ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], "3": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], + "4": [ "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9", "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8", "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206", @@ -25,6 +31,12 @@ "mappings": [ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], + "sample_mappings": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], "samplesheet": [ "samplesheet.csv:md5,69117245b73776d6e4daecdbfdff9767" ], @@ -38,6 +50,6 @@ ] } ], - "timestamp": "2023-09-25T12:03:02.485911" + "timestamp": "2023-10-06T12:14:02.500312" } } \ No newline at end of file diff --git a/workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test.snap index ff4b27df..d9d6ddee 100644 --- a/workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test.snap +++ b/workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test.snap @@ -12,6 +12,12 @@ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], "3": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], + "4": [ "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9", "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8", "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206", @@ -25,6 +31,12 @@ "mappings": [ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], + "sample_mappings": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], "samplesheet": [ "samplesheet.csv:md5,0705e78609390cc464c2fb10051178bc" ], @@ -38,6 +50,6 @@ ] } ], - "timestamp": "2023-09-25T11:55:48.759498" + "timestamp": "2023-10-06T12:07:01.184728" } } \ No newline at end of file diff --git a/workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test.snap index 4b38d6a1..c3e9ae8b 100644 --- a/workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test.snap +++ b/workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test.snap @@ -12,6 +12,12 @@ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], "3": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], + "4": [ "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9", "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8", "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206", @@ -25,6 +31,12 @@ "mappings": [ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], + "sample_mappings": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], "samplesheet": [ "samplesheet.csv:md5,c1104c2edfc663b103f79b0551450192" ], @@ -38,6 +50,6 @@ ] } ], - "timestamp": "2023-09-25T11:50:52.373496" + "timestamp": "2023-10-06T11:59:31.7356" } } \ No newline at end of file diff --git a/workflows/sra/tests/sra_skip_fastq_download.nf.test.snap b/workflows/sra/tests/sra_skip_fastq_download.nf.test.snap index 91a10c87..c137d853 100644 --- a/workflows/sra/tests/sra_skip_fastq_download.nf.test.snap +++ b/workflows/sra/tests/sra_skip_fastq_download.nf.test.snap @@ -12,6 +12,12 @@ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], "3": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], + "4": [ "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9", "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206", "versions.yml:md5,b21338b74b9a8fe0c7a114f7686c07cd", @@ -23,6 +29,12 @@ "mappings": [ "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342" ], + "sample_mappings": [ + [ + "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a", + "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9" + ] + ], "samplesheet": [ "samplesheet.csv:md5,b1636e896008b96044d352a0757a390b" ], @@ -34,6 +46,6 @@ ] } ], - "timestamp": "2023-09-25T11:03:28.968158" + "timestamp": "2023-10-06T12:18:48.477246" } } \ No newline at end of file