Cargo.toml

[package]
name = "nextclade-cli"
description = "Alignment, mutation calling, phylogenetic placement, clade assignment and quality control checks for viral genetic sequences. CLI module."
version = "2.0.0-alpha.3"
repository = "https://github.com/nextstrain/nextclade"
documentation = "https://docs.nextstrain.org/projects/nextclade/en/stable/"
homepage = "https://clades.nextstrain.org/"
edition = "2021"
license = "MIT"
publish = false

[dependencies]
assert2 = "0.3.6"
clap = { version = "3.1.8", features = ["derive"] }
clap-verbosity-flag = "1.0.0"
clap_complete = "3.1.1"
clap_complete_fig = "3.1.4"
color-eyre = "0.6.1"
comfy-table = "6.0.0-rc.1"
crossbeam = "0.8.1"
crossbeam-channel = "0.5.4"
ctor = "0.1.22"
dotenv = "0.15.0"
dotenv_codegen = "0.15.0"
eyre = "0.6.8"
indexmap = { version = "1.8.1", features = ["serde"] }
itertools = "0.10.3"
lazy_static = "1.4.0"
log = "0.4.16"
nextclade = { path = "../nextclade" }
num_cpus = "1.13.1"
owo-colors = "3.3.0"
pretty_assertions = "1.2.1"
rayon = "1.5.2"
regex = "1.5.5"
reqwest = { version = "0.11.10", default-features = false, features = ["blocking", "deflate", "gzip", "brotli", "socks", "rustls-tls"]}
semver = "1.0.9"
serde = { version = "1.0.136", features = ["derive"] }
url = { version = "2.2.2", features = ["serde"] }

[target.'cfg(all(target_os="linux", target_arch="x86_64"))'.dependencies]
mimalloc = { version = "0.1.28", default-features = false, optional = true }

[dev-dependencies]
assert2 = "0.3.6"
criterion = { version = "0.3.5", features = ["html_reports"] }
rstest = "0.12.0"
rstest_reuse = "0.3.0"