marker-disease.yaml

query: |
        MATCH path=(subject:gene)<-[geno:GENO:0000418|GENO:0000639!*0..1]-(feature)-[relation:RO:0003304|RO:0002326|RO:0002610!]->(object:disease)
        RETURN path,
        subject, object, relation,
        'marker_disease' as association_type,
        'gene' AS subject_category,
        'disease' AS object_category,
        'inferred through variant' as qualifier
        UNION ALL
        MATCH path=(subject:gene)<-[:GENO:0000418|GENO:0000639!]-(variant)<-[:BFO:0000051!*]-(genotype:genotype)-[relation:RO:0003304|RO:0002326|RO:0002610!]->(object:disease)
        RETURN path,
        subject, object, relation,
        'marker_disease' as association_type,
        'gene' AS subject_category,
        'disease' AS object_category,
        'inferred through genotype' as qualifier
        UNION ALL
        MATCH path=(subject:gene)<-[:GENO:0000418|GENO:0000639!]-(variant)<-[:BFO:0000051!*]-(genotype:genotype)<-[:GENO:0000222|RO:0001000*1..2]-(person)-[relation:RO:0002200!]->(object:disease)
        RETURN path,
        subject, object, relation,
        'marker_disease' as association_type,
        'gene' AS subject_category,
        'disease' AS object_category,
        'inferred through disease model' as qualifier