mammalian genomes

[kspham]

Thank you for developing this tool !! I wonder if it works (or you have tested it) for mammalian size genomes? We ran it for a couple of days (with 200GB bam file) and it gave an error:
Traceback (most recent call last):
File "./hagfish_extract", line 636, in
readPairs = parseBam(seqInfo, inputFile)
File "./hagfish_extract", line 440, in parseBam
stop2 = rp['stop2'])
File "/u/projects4/pashadag/pham/others/anna/hagfish/hagfish_file_util.py", line 23, in np_savez
cPickle.dump(kwargs[k], F,0)
SystemError: error return without exception set

Thank you!