From 0fe76b8bec04cbd8beb2ba542fba0de53d17da93 Mon Sep 17 00:00:00 2001 From: Ziwen Liu <67518483+ziw-liu@users.noreply.github.com> Date: Mon, 8 Jul 2024 15:09:28 -0700 Subject: [PATCH] html to md --- examples/demo_dlmbl/solution.py | 32 ++++++++++++++++---------------- 1 file changed, 16 insertions(+), 16 deletions(-) diff --git a/examples/demo_dlmbl/solution.py b/examples/demo_dlmbl/solution.py index 27d6c04f..d43908ea 100644 --- a/examples/demo_dlmbl/solution.py +++ b/examples/demo_dlmbl/solution.py @@ -1,21 +1,21 @@ # %% [markdown] """ -
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Image translation (Virtual Staining)

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Overview

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In this exercise, we will predict fluorescence images of nuclei and membrane markers from quantitative phase images of cells, i.e., we will virtually stain the nuclei and cell membrane visible in the phase image. This is an example of an image translation task. We will apply spatial and intensity augmentations to train robust models and evaluate their performance. Finally, we will explore the opposite process of predicting a phase image from a fluorescence membrane label.

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(click image to play)
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+# Image translation (Virtual Staining) + +## Overview + +In this exercise, we will predict fluorescence images of +nuclei and plasma membrane markers from quantitative phase images of cells, +i.e., we will _virtually stain_ the nuclei and plasma membrane +visible in the phase image. +This is an example of an image translation task. +We will apply spatial and intensity augmentations to train robust models +and evaluate their performance. +Finally, we will explore the opposite process of predicting a phase image +from a fluorescence membrane label. + +[![HEK293T](https://raw.githubusercontent.com/mehta-lab/VisCy/main/docs/figures/svideo_1.png)](https://github.com/mehta-lab/VisCy/assets/67518483/d53a81eb-eb37-44f3-b522-8bd7bddc7755) +(Click on image to play video) """ # %% [markdown]