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embedding.html
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<html>
<header>
<style type="text/css">
@import "css/ui-lightness/jquery-ui-1.8.4.custom.css";
</style>
<link rel="stylesheet" type="text/css" href="css/superfish.css" media="screen">
<link rel="stylesheet" type="text/css" href="css/tablesorter.css" media="screen">
<link rel="stylesheet" type="text/css" href="js/jquery.contextMenu-1.01/jquery.contextMenu.css" media="screen">
<link rel="stylesheet" type="text/css" href="css/artemis.css" media="screen">
<style>
div.wacontainer {
position:relative;
height:230px;
margin:0px;
padding:0px;
margin-top:-25px;
}
.chromosome_feature {
border:0px;
}
#chromosome-map-container {
margin-top:15px;
margin-left:25px;
}
#chromosome-map-slider {
margin-top:-26px;
height:22px;
z-index:100;
}
</style>
<script type="text/javascript" src="js/jquery-1.6.1.min.js"></script>
<script type="text/javascript" src="js/jquery-ui-1.8.4.custom.min.js"></script>
<script type="text/javascript" src="js/jquery.drawinglibrary/js/jquery.svg.js"></script>
<script type="text/javascript" src="js/jquery.drawinglibrary/js/jquery.drawinglibrary.js"></script>
<script type="text/javascript" src="js/jquery.flot.min.js"></script>
<script type="text/javascript" src="js/jquery.flot.selection.min.js"></script>
<script type="text/javascript" src="js/popup.js"></script>
<script type="text/javascript" src="js/jquery.contextMenu-1.01/jquery.contextMenu.js"></script>
<script type="text/javascript" src="js/observerable.js"></script>
<script type="text/javascript" src="js/utility.js"></script>
<script type="text/javascript" src="js/bases.js"></script>
<script type="text/javascript" src="js/aminoacid.js"></script>
<script type="text/javascript" src="js/superfish-1.4.8/hoverIntent.js"></script>
<script type="text/javascript" src="js/superfish-1.4.8/superfish.js"></script>
<script type="text/javascript" src="js/jquery.tablesorter.min.js"></script>
<script type="text/javascript" src="js/graph.js"></script>
<script type="text/javascript" src="js/scrolling.js"></script>
<script type="text/javascript" src="js/selection.js"></script>
<script type="text/javascript" src="js/zoom.js"></script>
<script type="text/javascript" src="js/featureCvTerm.js"></script>
<script type="text/javascript" src="js/bam.js"></script>
<script type="text/javascript" src="js/vcf.js"></script>
<script type="text/javascript" src="js/featureList.js"></script>
<script type="text/javascript" src="js/navigate.js"></script>
<script type="text/javascript" src="js/genome.js"></script>
<script type="text/javascript" src="js/samFlag.js"></script>
<script type="text/javascript" src="js/chromosoml/lib/jquery.log.js"></script>
<script type="text/javascript" src="js/chromosoml/lib/jquery.tmpl.js"></script>
<script type="text/javascript" src="js/chromosoml/lib/jquery.url.js"></script>
<script type='text/javascript' src='js/chromosoml/lib/knockout.js'></script>
<script type='text/javascript' src='js/chromosoml/lib/koExternalTemplateEngine.js'></script>
<script type="text/javascript" src="js/chromosoml/chromosoml.js"></script>
<script type="text/javascript" src="js/chromosoml/gene_page.js"></script>
<script>
$(document).ready(function() {
// as an embedded widget, the embedding page must inform
// web artemis of which chromosome to look at
var coordinates = {
fmin : 1,
fmax : 1000,
region : "Pf3D7_01__new"
}
var service = "http://www.genedb.org/services/";
$.ajax({
url: service + "/regions/sequenceLength.json",
dataType: 'jsonp',
data: { 'region' : coordinates.region },
success: function(regions) {
var sequenceLength = regions[0].length;
new wa.EmbeddedWebArtemis({
coordinates : coordinates,
webArtemisPath: $.url().attr("directory"),
sequenceLength : sequenceLength,
service : service
});
}
});
});
</script>
</header>
<body>
<h1>Example of embedding</h1>
<div style="width:200px;margin:auto;text-align:center;" class="spinner" ></div>
<div id="chromosome-map-container" >
<div id="chromosome-map" ></div>
<div id="chromosome-map-slider" ></div>
</div>
<div class="wacontainer">
<div id="webartemis"></div>
</div>
</body>
</html>