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Format faidx --stats using presets e.g. "bed" "chromsizes" "nucleotide"... #58

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mdshw5 opened this issue Mar 6, 2015 · 0 comments
Closed

Format faidx --stats using presets e.g. "bed" "chromsizes" "nucleotide"... #58

mdshw5 opened this issue Mar 6, 2015 · 0 comments
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enhancement
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v0.4.0

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mdshw5 commented Mar 6, 2015

"stats" right now just consists of the sequence names and lengths. It might be more useful to allow simple bed files, UCSC-style "chrom.sizes" files, and more advanced nucleotide (gc%, a/c/g/t, top kmer, etc...) formats to be specified like: faidx --stats bed and so on.
@mdshw5 mdshw5 self-assigned this Mar 6, 2015
@mdshw5 mdshw5 added this to the v0.3.9 milestone Mar 6, 2015
@mdshw5 mdshw5 modified the milestones: v0.3.9, v0.4.0 Apr 9, 2015
@mdshw5 mdshw5 closed this as completed in 00e82cc Apr 30, 2015
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