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template.yml
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kind: Template
apiVersion: template.openshift.io/v1
parameters:
- name: BRANCH
required: true
- name: APP
required: true
value: fin-biodiv-indicators
- name: PAGE_TITLE
required: true
value: "Finnish Biodiversity Indicators"
- name: APP_PORT
required: true
value: "8000"
- name: HEALTH
required: true
value: /healthz
- name: LIVENESS_PERIOD
required: true
value: "30"
- name: FAILURE_THRESHOLD
required: true
value: "5"
- name: READINESS_PERIOD
required: true
value: "5"
- name: DB
required: true
value: postgres
- name: DB_HEALTHCHECK
required: true
value: '[
"sh",
"-c",
"PGPASSWORD=$POSTGRES_PASSWORD
psql -h 0.0.0.0 -U postgres -d postgres -c \"SELECT 1\""
]'
- name: DB_PORT
required: true
value: "5432"
- name: DB_PATH
required: true
value: /var/lib/postgresql/data
- name: DB_DATA
required: true
value: /pgdata
- name: ACCESS_MODE
required: true
value: ReadWriteOnce
- name: STORAGE_CLASS
required: true
value: "standard-csi"
- name: STORAGE
required: true
- name: HOST
required: true
- name: DB_PASSWORD
required: true
- name: FINBIF_ACCESS_TOKEN
required: true
- name: FINBIF_API
required: true
- name: FINBIF_WAREHOUSE_QUERY
required: true
- name: FINBIF_EMAIL
required: true
- name: SMTP_SERVER
required: true
- name: SMTP_PORT
required: true
- name: ERROR_EMAIL_FROM
required: true
- name: OBJECT_STORE
required: true
- name: RCLONE_ACCESS_KEY_ID
required: true
- name: RCLONE_SECRET_ACCESS_KEY
required: true
- name: JOB_SECRET
required: true
- name: MEMORY
required: true
- name: SCHEDULE
required: true
metadata:
name: ${APP}
objects:
- kind: PersistentVolumeClaim
apiVersion: v1
metadata:
name: ${DB}-${BRANCH}
spec:
storageClassName: ${STORAGE_CLASS}
accessModes:
- ${ACCESS_MODE}
resources:
requests:
storage: ${STORAGE}
- kind: ConfigMap
apiVersion: v1
metadata:
name: ${APP}-${BRANCH}
data:
branch: ${BRANCH}
db: ${DB}
db_port: ${DB_PORT}
db_host: ${DB}-${BRANCH}
finbif_user_agent: https://github.com/luomus/${APP}:${BRANCH}
finbif_api: ${FINBIF_API}
finbif_warehouse_query: ${FINBIF_WAREHOUSE_QUERY}
finbif_email: ${FINBIF_EMAIL}
- kind: Secret
apiVersion: v1
metadata:
name: ${APP}-${BRANCH}
type: Opaque
data:
db_password: ${DB_PASSWORD}
finbif_access_token: ${FINBIF_ACCESS_TOKEN}
rclone_access_key_id: ${RCLONE_ACCESS_KEY_ID}
rclone_secret_access_key: ${RCLONE_SECRET_ACCESS_KEY}
job_secret: ${JOB_SECRET}
- kind: Deployment
apiVersion: apps/v1
metadata:
name: ${APP}-${BRANCH}
labels:
app: ${APP}
spec:
replicas: 1
selector:
matchLabels:
app: ${APP}
strategy:
type: Recreate
template:
metadata:
labels:
app: ${APP}
branch: ${BRANCH}
port: ${APP_PORT}
spec:
containers:
- image: ghcr.io/luomus/${APP}:${BRANCH}
imagePullPolicy: Always
name: ${APP}-${BRANCH}
ports:
- containerPort: ${{APP_PORT}}
volumeMounts:
- mountPath: /home/user/tmp
name: tmp
startupProbe:
httpGet:
path: ${HEALTH}
port: ${{APP_PORT}}
failureThreshold: ${{FAILURE_THRESHOLD}}
periodSeconds: ${{LIVENESS_PERIOD}}
livenessProbe:
httpGet:
path: ${HEALTH}
port: ${{APP_PORT}}
failureThreshold: ${{FAILURE_THRESHOLD}}
periodSeconds: ${{LIVENESS_PERIOD}}
readinessProbe:
httpGet:
path: ${HEALTH}
port: ${{APP_PORT}}
periodSeconds: ${{READINESS_PERIOD}}
env:
- name: PAGE_TITLE
value: ${PAGE_TITLE}
- name: FINBIF_USER_AGENT
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_user_agent
- name: PGUSER
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db
- name: PGPASSWORD
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: db_password
- name: PGHOST
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db_host
- name: FINBIF_ACCESS_TOKEN
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: finbif_access_token
- name: FINBIF_API
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_api
- name: FINBIF_WAREHOUSE_QUERY
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_warehouse_query
- name: FINBIF_EMAIL
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_email
- name: JOB_SECRET
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: job_secret
- name: BRANCH
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: branch
- name: SMTP_SERVER
value: ${SMTP_SERVER}
- name: SMTP_PORT
value: ${SMTP_PORT}
- name: ERROR_EMAIL_TO
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_email
- name: ERROR_EMAIL_FROM
value: ${ERROR_EMAIL_FROM}
resources:
limits:
cpu: "500m"
memory: "1Gi"
volumes:
- name: tmp
emptyDir:
medium: Memory
- kind: Deployment
apiVersion: apps/v1
metadata:
name: ${DB}-${BRANCH}
labels:
app: ${APP}
spec:
replicas: 1
selector:
matchLabels:
app: ${APP}
strategy:
type: Recreate
template:
metadata:
labels:
app: ${APP}
branch: ${BRANCH}
port: ${DB_PORT}
spec:
containers:
- image: ghcr.io/luomus/postgis-image:main
imagePullPolicy: Always
name: ${DB}-${BRANCH}
volumeMounts:
- mountPath: ${DB_PATH}
name: ${DB}-${BRANCH}
ports:
- containerPort: ${{DB_PORT}}
startupProbe:
exec:
command: ${{DB_HEALTHCHECK}}
failureThreshold: ${{FAILURE_THRESHOLD}}
periodSeconds: ${{LIVENESS_PERIOD}}
livenessProbe:
exec:
command: ${{DB_HEALTHCHECK}}
failureThreshold: ${{FAILURE_THRESHOLD}}
periodSeconds: ${{LIVENESS_PERIOD}}
readinessProbe:
exec:
command: ${{DB_HEALTHCHECK}}
periodSeconds: ${{READINESS_PERIOD}}
env:
- name: PGDATA
value: ${DB_PATH}${DB_DATA}
- name: POSTGRES_DB
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db
- name: POSTGRES_PORT
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db_port
- name: POSTGRES_USER
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db
- name: POSTGRES_PASSWORD
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: db_password
resources:
limits:
cpu: "1000m"
memory: "2Gi"
volumes:
- name: ${DB}-${BRANCH}
persistentVolumeClaim:
claimName: ${DB}-${BRANCH}
- kind: Service
apiVersion: v1
metadata:
name: ${APP}-${BRANCH}
labels:
app: ${APP}
spec:
ports:
- name: ${APP_PORT}
port: ${{APP_PORT}}
targetPort: ${{APP_PORT}}
selector:
app: ${APP}
branch: ${BRANCH}
port: ${APP_PORT}
- kind: Service
apiVersion: v1
metadata:
name: ${DB}-${BRANCH}
labels:
app: ${APP}
spec:
ports:
- name: ${DB_PORT}
port: ${{DB_PORT}}
targetPort: ${{DB_PORT}}
selector:
app: ${APP}
branch: ${BRANCH}
port: ${DB_PORT}
- kind: Route
apiVersion: v1
metadata:
name: ${APP}-${BRANCH}
labels:
app: ${APP}
spec:
host: ${HOST}
port:
targetPort: ${{APP_PORT}}
tls:
insecureEdgeTerminationPolicy: Redirect
to:
kind: Service
name: ${APP}-${BRANCH}
- kind: CronJob
apiVersion: batch/v1
metadata:
name: ${APP}-${BRANCH}
spec:
schedule: ${SCHEDULE}
concurrencyPolicy: Forbid
successfulJobsHistoryLimit: 10
failedJobsHistoryLimit: 10
jobTemplate:
spec:
activeDeadlineSeconds: 7200
backoffLimit: 0
template:
metadata:
labels:
app: ${APP}
spec:
containers:
- image: ghcr.io/luomus/${APP}:${BRANCH}
imagePullPolicy: Always
name: ${APP}-${BRANCH}
command:
- 'Rscript'
- '--vanilla'
- 'update_indices.R'
env:
- name: FINBIF_USER_AGENT
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_user_agent
- name: FINBIF_ACCESS_TOKEN
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: finbif_access_token
- name: FINBIF_API
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_api
- name: FINBIF_WAREHOUSE_QUERY
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_warehouse_query
- name: FINBIF_EMAIL
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_email
- name: PGUSER
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db
- name: PGPASSWORD
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: db_password
- name: PGHOST
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db_host
- name: JOB_SECRET
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: job_secret
- name: APP_HOSTNAME
value: ${APP}-${BRANCH}
- name: APP_PORT
value: ${APP_PORT}
- name: BRANCH
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: branch
resources:
limits:
cpu: "1000m"
memory: ${MEMORY}
restartPolicy: Never