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Test suite failures: Pytest fails with multiprocessing, ConstantModel has not independent_vars #879

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nomeata opened this issue May 9, 2023 · 1 comment
Closed

Test suite failures: Pytest fails with multiprocessing, ConstantModel has not independent_vars #879

nomeata opened this issue May 9, 2023 · 1 comment

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@nomeata
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nomeata commented May 9, 2023

Yes, I read the instructions and I am sure this is a GitHub Issue.

Or at least rather confident.

Description

I am trying to package lmfit for nixpkgs, but the test suite fails with these three errors, due to skipped tests:

======================================================================
ERROR: test_emcee_multiprocessing (tests.test_nose.CommonMinimizerTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/lmfit-1.2.1/tests/test_nose.py", line 490, in test_emcee_multiprocessing
    raise pytest.skip("Pytest fails with multiprocessing")
  File "/nix/store/j9ld50p4ky8zizisxphn1vaa3ly7dcva-python3.10-pytest-7.2.1/lib/python3.10/site-packages/_pytest/outcomes.py", line 175, in skip
    raise Skipped(msg=reason, allow_module_level=allow_module_level)
Skipped: Pytest fails with multiprocessing

======================================================================
ERROR: test_explicit_independent_vars (tests.test_model.TestConstant)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/lmfit-1.2.1/tests/test_model.py", line 608, in test_explicit_independent_vars
    self.check_skip_independent_vars()
  File "/build/lmfit-1.2.1/tests/test_model.py", line 1347, in check_skip_independent_vars
    raise pytest.skip("ConstantModel has not independent_vars.")
  File "/nix/store/j9ld50p4ky8zizisxphn1vaa3ly7dcva-python3.10-pytest-7.2.1/lib/python3.10/site-packages/_pytest/outcomes.py", line 175, in skip
    raise Skipped(msg=reason, allow_module_level=allow_module_level)
Skipped: ConstantModel has not independent_vars.

======================================================================
ERROR: test_result_eval_custom_x (tests.test_model.TestConstant)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/lmfit-1.2.1/tests/test_model.py", line 666, in test_result_eval_custom_x
    self.check_skip_independent_vars()
  File "/build/lmfit-1.2.1/tests/test_model.py", line 1347, in check_skip_independent_vars
    raise pytest.skip("ConstantModel has not independent_vars.")
  File "/nix/store/j9ld50p4ky8zizisxphn1vaa3ly7dcva-python3.10-pytest-7.2.1/lib/python3.10/site-packages/_pytest/outcomes.py", line 175, in skip
    raise Skipped(msg=reason, allow_module_level=allow_module_level)
Skipped: ConstantModel has not independent_vars.

----------------------------------------------------------------------
Ran 144 tests in 2.182s
Version information

This is trying to package lmfit-1.2.1

Dependencies:

Python: 3.10.11 (main, Apr  4 2023, 22:10:32) [GCC 12.2.0]

scipy: 1.10.1, numpy: 1.24.2,asteval: 0.9.29, uncertainties: 3.1.7

Also, pytest-7.2.1.

Full build log 
Sourcing python-remove-tests-dir-hook
Sourcing python-catch-conflicts-hook.sh
Sourcing python-remove-bin-bytecode-hook.sh
Sourcing setuptools-build-hook
Using setuptoolsBuildPhase
Using setuptoolsShellHook
Sourcing pip-install-hook
Using pipInstallPhase
Sourcing python-imports-check-hook.sh
Using pythonImportsCheckPhase
Sourcing python-namespaces-hook
Sourcing python-catch-conflicts-hook.sh
Sourcing setuptools-check-hook
Using setuptoolsCheckPhase
@nix { "action": "setPhase", "phase": "unpackPhase" }
unpacking sources
unpacking source archive /nix/store/zrfxigpfdl3sn897n6jqhla4spak17v4-lmfit-1.2.1.tar.gz
source root is lmfit-1.2.1
setting SOURCE_DATE_EPOCH to timestamp 1683049963 of file lmfit-1.2.1/setup.cfg
@nix { "action": "setPhase", "phase": "patchPhase" }
patching sources
@nix { "action": "setPhase", "phase": "configurePhase" }
configuring
no configure script, doing nothing
@nix { "action": "setPhase", "phase": "buildPhase" }
building
Executing setuptoolsBuildPhase
/nix/store/laiizs9x3qx26f82s9x5nb8ywd0ffy1c-python3.10-setuptools-67.4.0/lib/python3.10/site-packages/setuptools/__init__.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`.
  dist.fetch_build_eggs(dist.setup_requires)
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/lmfit
copying lmfit/version.py -> build/lib/lmfit
copying lmfit/conf_emcee.py -> build/lib/lmfit
copying lmfit/_ampgo.py -> build/lib/lmfit
copying lmfit/jsonutils.py -> build/lib/lmfit
copying lmfit/parameter.py -> build/lib/lmfit
copying lmfit/__init__.py -> build/lib/lmfit
copying lmfit/minimizer.py -> build/lib/lmfit
copying lmfit/printfuncs.py -> build/lib/lmfit
copying lmfit/model.py -> build/lib/lmfit
copying lmfit/models.py -> build/lib/lmfit
copying lmfit/lineshapes.py -> build/lib/lmfit
copying lmfit/confidence.py -> build/lib/lmfit
/nix/store/laiizs9x3qx26f82s9x5nb8ywd0ffy1c-python3.10-setuptools-67.4.0/lib/python3.10/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/version.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/conf_emcee.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/parameter.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/__init__.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/minimizer.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/model.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/models.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/confidence.py -> build/bdist.linux-x86_64/wheel/lmfit
running install_egg_info
running egg_info
writing lmfit.egg-info/PKG-INFO
writing dependency_links to lmfit.egg-info/dependency_links.txt
writing requirements to lmfit.egg-info/requires.txt
writing top-level names to lmfit.egg-info/top_level.txt
reading manifest file 'lmfit.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS.txt'
writing manifest file 'lmfit.egg-info/SOURCES.txt'
Copying lmfit.egg-info to build/bdist.linux-x86_64/wheel/lmfit-1.2.1-py3.10.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/lmfit-1.2.1.dist-info/WHEEL
creating 'dist/lmfit-1.2.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'lmfit/__init__.py'
adding 'lmfit/_ampgo.py'
adding 'lmfit/conf_emcee.py'
adding 'lmfit/confidence.py'
adding 'lmfit/jsonutils.py'
adding 'lmfit/lineshapes.py'
adding 'lmfit/minimizer.py'
adding 'lmfit/model.py'
adding 'lmfit/models.py'
adding 'lmfit/parameter.py'
adding 'lmfit/printfuncs.py'
adding 'lmfit/version.py'
adding 'lmfit-1.2.1.dist-info/AUTHORS.txt'
adding 'lmfit-1.2.1.dist-info/LICENSE'
adding 'lmfit-1.2.1.dist-info/METADATA'
adding 'lmfit-1.2.1.dist-info/WHEEL'
adding 'lmfit-1.2.1.dist-info/top_level.txt'
adding 'lmfit-1.2.1.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Finished executing setuptoolsBuildPhase
@nix { "action": "setPhase", "phase": "installPhase" }
installing
Executing pipInstallPhase
/build/lmfit-1.2.1/dist /build/lmfit-1.2.1
Processing ./lmfit-1.2.1-py3-none-any.whl
Requirement already satisfied: asteval>=0.9.28 in /nix/store/vni7rap2bnpnr7svsnm7p7s8b3qgxwfc-python3.10-asteval-0.9.29/lib/python3.10/site-packages (from lmfit==1.2.1) (0.9.29)
Requirement already satisfied: numpy>=1.19 in /nix/store/9jnlpm3r4i8rcynr8674cg123r4wx0gy-python3.10-numpy-1.24.2/lib/python3.10/site-packages (from lmfit==1.2.1) (1.24.2)
Requirement already satisfied: uncertainties>=3.1.4 in /nix/store/h9r71380vpv2lsh2x3m40imga80906f0-python3.10-uncertainties-3.1.7/lib/python3.10/site-packages (from lmfit==1.2.1) (3.1.7)
Requirement already satisfied: scipy>=1.6 in /nix/store/i9098fjra2lqj82hjwrf28h6rjnkv14y-python3.10-scipy-1.10.1/lib/python3.10/site-packages (from lmfit==1.2.1) (1.10.1)
Requirement already satisfied: future in /nix/store/jcz06x2ccdapcjs2icxnlkl0ffyyq0gr-python3.10-future-0.18.3/lib/python3.10/site-packages (from uncertainties>=3.1.4->lmfit==1.2.1) (0.18.3)
Installing collected packages: lmfit
Successfully installed lmfit-1.2.1
/build/lmfit-1.2.1
Finished executing pipInstallPhase
@nix { "action": "setPhase", "phase": "pythonOutputDistPhase" }
pythonOutputDistPhase
Executing pythonOutputDistPhase
Finished executing pythonOutputDistPhase
@nix { "action": "setPhase", "phase": "fixupPhase" }
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/2y141pi2q8kdsxyi7m1kmvlz7jvpyk4p-python3.10-lmfit-1.2.1
checking for references to /build/ in /nix/store/2y141pi2q8kdsxyi7m1kmvlz7jvpyk4p-python3.10-lmfit-1.2.1...
patching script interpreter paths in /nix/store/2y141pi2q8kdsxyi7m1kmvlz7jvpyk4p-python3.10-lmfit-1.2.1
stripping (with command strip and flags -S -p) in  /nix/store/2y141pi2q8kdsxyi7m1kmvlz7jvpyk4p-python3.10-lmfit-1.2.1/lib
shrinking RPATHs of ELF executables and libraries in /nix/store/f4n668dszcxqznn8wi6bqjv8j45mf9mc-python3.10-lmfit-1.2.1-dist
checking for references to /build/ in /nix/store/f4n668dszcxqznn8wi6bqjv8j45mf9mc-python3.10-lmfit-1.2.1-dist...
patching script interpreter paths in /nix/store/f4n668dszcxqznn8wi6bqjv8j45mf9mc-python3.10-lmfit-1.2.1-dist
Executing pythonRemoveTestsDir
Finished executing pythonRemoveTestsDir
@nix { "action": "setPhase", "phase": "installCheckPhase" }
running install tests
no Makefile or custom installCheckPhase, doing nothing
@nix { "action": "setPhase", "phase": "pythonCatchConflictsPhase" }
pythonCatchConflictsPhase
@nix { "action": "setPhase", "phase": "pythonRemoveBinBytecodePhase" }
pythonRemoveBinBytecodePhase
@nix { "action": "setPhase", "phase": "pythonImportsCheckPhase" }
pythonImportsCheckPhase
Executing pythonImportsCheckPhase
@nix { "action": "setPhase", "phase": "setuptoolsCheckPhase" }
setuptoolsCheckPhase
Executing setuptoolsCheckPhase
/nix/store/laiizs9x3qx26f82s9x5nb8ywd0ffy1c-python3.10-setuptools-67.4.0/lib/python3.10/site-packages/setuptools/__init__.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`.
  dist.fetch_build_eggs(dist.setup_requires)
running test
WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox.
/nix/store/laiizs9x3qx26f82s9x5nb8ywd0ffy1c-python3.10-setuptools-67.4.0/lib/python3.10/site-packages/setuptools/command/test.py:194: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`.
  ir_d = dist.fetch_build_eggs(dist.install_requires)
/nix/store/laiizs9x3qx26f82s9x5nb8ywd0ffy1c-python3.10-setuptools-67.4.0/lib/python3.10/site-packages/setuptools/command/test.py:195: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`.
  tr_d = dist.fetch_build_eggs(dist.tests_require or [])
/nix/store/laiizs9x3qx26f82s9x5nb8ywd0ffy1c-python3.10-setuptools-67.4.0/lib/python3.10/site-packages/setuptools/command/test.py:196: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`.
  er_d = dist.fetch_build_eggs(
running egg_info
writing lmfit.egg-info/PKG-INFO
writing dependency_links to lmfit.egg-info/dependency_links.txt
writing requirements to lmfit.egg-info/requires.txt
writing top-level names to lmfit.egg-info/top_level.txt
reading manifest file 'lmfit.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS.txt'
writing manifest file 'lmfit.egg-info/SOURCES.txt'
running build_ext
Matplotlib created a temporary config/cache directory at /build/matplotlib-r7cene7i because the default path (/homeless-shelter/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
test_diffev_bounds_check (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_bounds_length (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_custom_pool (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_float (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_init_with_chain (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_lnpost (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_method_kwarg (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_multiprocessing (tests.test_nose.CommonMinimizerTest) ... ERROR
test_emcee_ntemps (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_output (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_partial_bounds (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_reuse_sampler (tests.test_nose.CommonMinimizerTest) ... ok
test_emcee_seed (tests.test_nose.CommonMinimizerTest) ... ok
test_nan_policy (tests.test_nose.CommonMinimizerTest) ... capi_return is NULL
Call-back cb_calcfc_in__cobyla__user__routines failed.
ok
test_nan_policy_function (tests.test_nose.CommonMinimizerTest) ... ok
test_scalar_minimizers (tests.test_nose.CommonMinimizerTest) ... /build/lmfit-1.2.1/lmfit/minimizer.py:1036: DeprecationWarning: 'maxiter' has been deprecated in favor of 'maxfun' and will be removed in SciPy 1.11.0.
  ret = scipy_minimize(self.penalty, variables, **fmin_kws)
ok
test_aic (tests.test_model.TestComplexConstant) ... ok
test_bic (tests.test_model.TestComplexConstant) ... ok
test_data_alignment (tests.test_model.TestComplexConstant) ... ok
test_explicit_independent_vars (tests.test_model.TestComplexConstant) ... ok
test_fit (tests.test_model.TestComplexConstant) ... ok
test_fit_with_weights (tests.test_model.TestComplexConstant) ... ok
test_result_attributes (tests.test_model.TestComplexConstant) ... ok
test_result_eval (tests.test_model.TestComplexConstant) ... ok
test_result_eval_custom_x (tests.test_model.TestComplexConstant) ... ok
test_result_report (tests.test_model.TestComplexConstant) ... ok
test_aic (tests.test_model.TestConstant) ... ok
test_bic (tests.test_model.TestConstant) ... ok
test_data_alignment (tests.test_model.TestConstant) ... ok
test_explicit_independent_vars (tests.test_model.TestConstant) ... ERROR
test_fit (tests.test_model.TestConstant) ... ok
test_fit_with_weights (tests.test_model.TestConstant) ... ok
test_result_attributes (tests.test_model.TestConstant) ... ok
test_result_eval (tests.test_model.TestConstant) ... ok
test_result_eval_custom_x (tests.test_model.TestConstant) ... ERROR
test_result_report (tests.test_model.TestConstant) ... ok
test_aic (tests.test_model.TestExponential) ... ok
test_bic (tests.test_model.TestExponential) ... ok
test_data_alignment (tests.test_model.TestExponential) ... ok
test_explicit_independent_vars (tests.test_model.TestExponential) ... ok
test_fit (tests.test_model.TestExponential) ... ok
test_fit_with_weights (tests.test_model.TestExponential) ... ok
test_result_attributes (tests.test_model.TestExponential) ... ok
test_result_eval (tests.test_model.TestExponential) ... ok
test_result_eval_custom_x (tests.test_model.TestExponential) ... ok
test_result_report (tests.test_model.TestExponential) ... ok
test_aic (tests.test_model.TestExpression) ... ok
test_bic (tests.test_model.TestExpression) ... ok
test_composite_with_expression (tests.test_model.TestExpression) ... ok
test_data_alignment (tests.test_model.TestExpression) ... ok
test_explicit_independent_vars (tests.test_model.TestExpression) ... ok
test_fit (tests.test_model.TestExpression) ... ok
test_fit_with_weights (tests.test_model.TestExpression) ... ok
test_result_attributes (tests.test_model.TestExpression) ... ok
test_result_eval (tests.test_model.TestExpression) ... ok
test_result_eval_custom_x (tests.test_model.TestExpression) ... ok
test_result_report (tests.test_model.TestExpression) ... ok
test_aic (tests.test_model.TestLinear) ... ok
test_bic (tests.test_model.TestLinear) ... ok
test_data_alignment (tests.test_model.TestLinear) ... ok
test_explicit_independent_vars (tests.test_model.TestLinear) ... ok
test_fit (tests.test_model.TestLinear) ... ok
test_fit_with_weights (tests.test_model.TestLinear) ... ok
test_result_attributes (tests.test_model.TestLinear) ... ok
test_result_eval (tests.test_model.TestLinear) ... ok
test_result_eval_custom_x (tests.test_model.TestLinear) ... ok
test_result_report (tests.test_model.TestLinear) ... ok
test_aic (tests.test_model.TestParabolic) ... ok
test_bic (tests.test_model.TestParabolic) ... ok
test_data_alignment (tests.test_model.TestParabolic) ... ok
test_explicit_independent_vars (tests.test_model.TestParabolic) ... ok
test_fit (tests.test_model.TestParabolic) ... ok
test_fit_with_weights (tests.test_model.TestParabolic) ... ok
test_result_attributes (tests.test_model.TestParabolic) ... ok
test_result_eval (tests.test_model.TestParabolic) ... ok
test_result_eval_custom_x (tests.test_model.TestParabolic) ... ok
test_result_report (tests.test_model.TestParabolic) ... ok
test_aic (tests.test_model.TestPolynomialOrder2) ... ok
test_bic (tests.test_model.TestPolynomialOrder2) ... ok
test_data_alignment (tests.test_model.TestPolynomialOrder2) ... ok
test_explicit_independent_vars (tests.test_model.TestPolynomialOrder2) ... ok
test_fit (tests.test_model.TestPolynomialOrder2) ... ok
test_fit_with_weights (tests.test_model.TestPolynomialOrder2) ... ok
test_result_attributes (tests.test_model.TestPolynomialOrder2) ... ok
test_result_eval (tests.test_model.TestPolynomialOrder2) ... ok
test_result_eval_custom_x (tests.test_model.TestPolynomialOrder2) ... ok
test_result_report (tests.test_model.TestPolynomialOrder2) ... ok
test_aic (tests.test_model.TestPolynomialOrder3) ... ok
test_bic (tests.test_model.TestPolynomialOrder3) ... ok
test_data_alignment (tests.test_model.TestPolynomialOrder3) ... ok
test_explicit_independent_vars (tests.test_model.TestPolynomialOrder3) ... ok
test_fit (tests.test_model.TestPolynomialOrder3) ... ok
test_fit_with_weights (tests.test_model.TestPolynomialOrder3) ... ok
test_result_attributes (tests.test_model.TestPolynomialOrder3) ... ok
test_result_eval (tests.test_model.TestPolynomialOrder3) ... ok
test_result_eval_custom_x (tests.test_model.TestPolynomialOrder3) ... ok
test_result_report (tests.test_model.TestPolynomialOrder3) ... ok
test_aic (tests.test_model.TestPowerlaw) ... ok
test_bic (tests.test_model.TestPowerlaw) ... ok
test_data_alignment (tests.test_model.TestPowerlaw) ... ok
test_explicit_independent_vars (tests.test_model.TestPowerlaw) ... ok
test_fit (tests.test_model.TestPowerlaw) ... ok
test_fit_with_weights (tests.test_model.TestPowerlaw) ... ok
test_result_attributes (tests.test_model.TestPowerlaw) ... ok
test_result_eval (tests.test_model.TestPowerlaw) ... ok
test_result_eval_custom_x (tests.test_model.TestPowerlaw) ... ok
test_result_report (tests.test_model.TestPowerlaw) ... ok
test_aic (tests.test_model.TestUserDefiniedModel) ... ok
test_bic (tests.test_model.TestUserDefiniedModel) ... ok
test_bounding (tests.test_model.TestUserDefiniedModel) ... ok
test_change_prefix (tests.test_model.TestUserDefiniedModel)
should pass! ... ok
test_composite_has_bestvalues (tests.test_model.TestUserDefiniedModel) ... ok
test_composite_model_with_expr_constrains (tests.test_model.TestUserDefiniedModel)
Smoke test for composite model fitting with expr constraints. ... ok
test_composite_plotting (tests.test_model.TestUserDefiniedModel) ... generated new fontManager
ok
test_data_alignment (tests.test_model.TestUserDefiniedModel) ... ok
test_different_independent_vars_composite_modeld (tests.test_model.TestUserDefiniedModel)
Regression test for different independent variables in CompositeModel. ... ok
test_eval_components (tests.test_model.TestUserDefiniedModel) ... ok
test_explicit_independent_vars (tests.test_model.TestUserDefiniedModel) ... ok
test_extra_param_issues_warning (tests.test_model.TestUserDefiniedModel) ... ok
test_fit (tests.test_model.TestUserDefiniedModel) ... ok
test_fit_with_weights (tests.test_model.TestUserDefiniedModel) ... ok
test_hints_for_peakmodels (tests.test_model.TestUserDefiniedModel) ... ok
test_hints_in_composite_models (tests.test_model.TestUserDefiniedModel) ... ok
test_lists_become_arrays (tests.test_model.TestUserDefiniedModel) ... ok
test_missing_independent_variable_raises_error (tests.test_model.TestUserDefiniedModel) ... ok
test_missing_param_raises_error (tests.test_model.TestUserDefiniedModel) ... ok
test_model_name (tests.test_model.TestUserDefiniedModel) ... ok
test_model_nan_policy (tests.test_model.TestUserDefiniedModel)
Tests for nan_policy with NaN values in the input data. ... ok
test_model_nan_policy_NaNs_by_model (tests.test_model.TestUserDefiniedModel)
Test for nan_policy with NaN values generated by the model function. ... ok
test_model_with_prefix (tests.test_model.TestUserDefiniedModel) ... ok
test_param_hint_explicit_value (tests.test_model.TestUserDefiniedModel) ... ok
test_result_attributes (tests.test_model.TestUserDefiniedModel) ... ok
test_result_eval (tests.test_model.TestUserDefiniedModel) ... ok
test_result_eval_custom_x (tests.test_model.TestUserDefiniedModel) ... ok
test_result_report (tests.test_model.TestUserDefiniedModel) ... ok
test_sum_composite_models (tests.test_model.TestUserDefiniedModel) ... ok
test_sum_of_two_gaussians (tests.test_model.TestUserDefiniedModel) ... ok
test_symmetric_boundss (tests.test_model.TestUserDefiniedModel) ... [[Model]]
    Model(gaussian)
[[Fit Statistics]]
    # fitting method   = leastsq
    # function evals   = 26
    # data points      = 51
    # variables        = 3
    chi-square         = 0.63097732
    reduced chi-square = 0.01314536
    Akaike info crit   = -218.007861
    Bayesian info crit = -212.212384
    R-squared          = 0.93909122
[[Variables]]
    amplitude:  7.89848798 +/- 0.26132589 (3.31%) (init = 10)
    center:     12.9007899 +/- 0.09320727 (0.72%) (init = 10)
    sigma:      2.44044133 +/- 0.09329306 (3.82%) (init = 2.2)
[[Correlations]] (unreported correlations are < 0.100)
    C(amplitude, sigma) = +0.5778
ok
test_unprefixed_name_collisions (tests.test_model.TestUserDefiniedModel) ... ok
test_user_defined_gaussian_plus_constant (tests.test_model.TestUserDefiniedModel) ... ok
test_vary_false (tests.test_model.TestUserDefiniedModel) ... ok
test_weird_param_hints (tests.test_model.TestUserDefiniedModel) ... ok
test_wrapped_model_func (tests.test_model.TestUserDefiniedModel) ... ok

======================================================================
ERROR: test_emcee_multiprocessing (tests.test_nose.CommonMinimizerTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/lmfit-1.2.1/tests/test_nose.py", line 490, in test_emcee_multiprocessing
    raise pytest.skip("Pytest fails with multiprocessing")
  File "/nix/store/j9ld50p4ky8zizisxphn1vaa3ly7dcva-python3.10-pytest-7.2.1/lib/python3.10/site-packages/_pytest/outcomes.py", line 175, in skip
    raise Skipped(msg=reason, allow_module_level=allow_module_level)
Skipped: Pytest fails with multiprocessing

======================================================================
ERROR: test_explicit_independent_vars (tests.test_model.TestConstant)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/lmfit-1.2.1/tests/test_model.py", line 608, in test_explicit_independent_vars
    self.check_skip_independent_vars()
  File "/build/lmfit-1.2.1/tests/test_model.py", line 1347, in check_skip_independent_vars
    raise pytest.skip("ConstantModel has not independent_vars.")
  File "/nix/store/j9ld50p4ky8zizisxphn1vaa3ly7dcva-python3.10-pytest-7.2.1/lib/python3.10/site-packages/_pytest/outcomes.py", line 175, in skip
    raise Skipped(msg=reason, allow_module_level=allow_module_level)
Skipped: ConstantModel has not independent_vars.

======================================================================
ERROR: test_result_eval_custom_x (tests.test_model.TestConstant)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/lmfit-1.2.1/tests/test_model.py", line 666, in test_result_eval_custom_x
    self.check_skip_independent_vars()
  File "/build/lmfit-1.2.1/tests/test_model.py", line 1347, in check_skip_independent_vars
    raise pytest.skip("ConstantModel has not independent_vars.")
  File "/nix/store/j9ld50p4ky8zizisxphn1vaa3ly7dcva-python3.10-pytest-7.2.1/lib/python3.10/site-packages/_pytest/outcomes.py", line 175, in skip
    raise Skipped(msg=reason, allow_module_level=allow_module_level)
Skipped: ConstantModel has not independent_vars.

----------------------------------------------------------------------
Ran 144 tests in 2.201s

FAILED (errors=3)
Test failed: <unittest.runner.TextTestResult run=144 errors=3 failures=0>
error: Test failed: <unittest.runner.TextTestResult run=144 errors=3 failures=0>

Is this an issue with the versions of dependencies I am using, or something else?
@nomeata
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nomeata commented May 9, 2023

Sorry for the dups, Github showed an Error 500 and suggested I refresh.

@nomeata nomeata closed this as completed May 9, 2023
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