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Cron jobs for running workflows and publishing results #16

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ajtritt opened this issue Dec 12, 2024 · 1 comment
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Cron jobs for running workflows and publishing results #16

ajtritt opened this issue Dec 12, 2024 · 1 comment
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analysis@nersc analysis workflows at NERSC (bilbomd, alphafold, docking)

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ajtritt commented Dec 12, 2024

Set up cron jobs in Spin or Perlmutter workflow queue for running AlphaFold jobs and submitting the results to JAMO.

We need two cron jobs:

  1. A cron job to check the Jira project for new work and submitting jobs to Perlmutter. Jobs should output to a specific directory
  2. A cron job to check the output directory from step 1 for new results and push results to Jira and JAMO. This should use the scripts developed as part of Push AlphaFold results to JAMO t5-data#3
@ajtritt ajtritt self-assigned this Dec 12, 2024
@oruebel oruebel added the analysis@nersc analysis workflows at NERSC (bilbomd, alphafold, docking) label Feb 26, 2025
@ajtritt ajtritt mentioned this issue Feb 27, 2025
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@ajtritt ajtritt changed the title Cron job for running AlphaFold and publishing results Cron job for running workflows and publishing results Feb 27, 2025
@ajtritt ajtritt changed the title Cron job for running workflows and publishing results Cron jobs for running workflows and publishing results Feb 27, 2025
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ajtritt commented Mar 8, 2025

This was addressed by #29

@ajtritt ajtritt closed this as completed Mar 8, 2025
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