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DESCRIPTION
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Package: chipmine
Type: Package
Title: Analyze ChIP-seq Data
Version: 1.6.3
Author: Lakhansing Pardeshi
Maintainer: Lakhansing Pardeshi <[email protected]>
Description: This package process the ChIP-seq profile matrices, peak calling
results to generate various plots. These plots are useful for exploratory
analysis of the data.
License: What license is it under?
Encoding: UTF-8
LazyData: true
Depends:
markPeaks,
tidyverse (>= 1.2.1),
data.table (>= 1.10.4),
circlize (>= 0.4.5),
ComplexHeatmap (>= 2.0.0),
EnrichedHeatmap (>= 1.14.0),
GenomicRanges (>= 1.34.0),
rtracklayer (>= 1.40.3),
matrixStats (>= 0.54.0),
scales (>= 1.0.0),
ggbeeswarm (>= 0.6.0)
Imports:
magrittr,
VennDiagram (>= 1.6.17),
RColorBrewer,
imputeTS,
lazyeval,
ggpubr (>= 0.1.5)
Remotes:
github::lakhanp1/markPeaks
RoxygenNote: 7.1.1