diff --git a/docs/tutorials/gloo-proxy.md b/docs/tutorials/gloo-proxy.md
index 7a9994eca6..52b1f830c0 100644
--- a/docs/tutorials/gloo-proxy.md
+++ b/docs/tutorials/gloo-proxy.md
@@ -25,7 +25,7 @@ spec:
         image: registry.k8s.io/external-dns/external-dns:v0.13.5
         args:
         - --source=gloo-proxy
-        - --gloo-namespace=custom-gloo-system # gloo system namespace. Omit to use the default (gloo-system)
+        - --gloo-namespace=custom-gloo-system # gloo system namespace. Specify multiple times for multiple namespaces. Omit to use the default (gloo-system)
         - --provider=aws
         - --registry=txt
         - --txt-owner-id=my-identifier
@@ -93,7 +93,7 @@ spec:
         image: registry.k8s.io/external-dns/external-dns:v0.13.5
         args:
         - --source=gloo-proxy
-        - --gloo-namespace=custom-gloo-system # gloo system namespace. Omit to use the default (gloo-system)
+        - --gloo-namespace=custom-gloo-system # gloo system namespace. Specify multiple times for multiple namespaces. Omit to use the default (gloo-system)
         - --provider=aws
         - --registry=txt
         - --txt-owner-id=my-identifier
diff --git a/main.go b/main.go
index 63e065bad0..07a4986dfd 100644
--- a/main.go
+++ b/main.go
@@ -140,7 +140,7 @@ func main() {
 		CFAPIEndpoint:                  cfg.CFAPIEndpoint,
 		CFUsername:                     cfg.CFUsername,
 		CFPassword:                     cfg.CFPassword,
-		GlooNamespace:                  cfg.GlooNamespace,
+		GlooNamespaces:                 cfg.GlooNamespaces,
 		SkipperRouteGroupVersion:       cfg.SkipperRouteGroupVersion,
 		RequestTimeout:                 cfg.RequestTimeout,
 		DefaultTargets:                 cfg.DefaultTargets,
diff --git a/pkg/apis/externaldns/types.go b/pkg/apis/externaldns/types.go
index e8ff366363..ad0c0fa9c8 100644
--- a/pkg/apis/externaldns/types.go
+++ b/pkg/apis/externaldns/types.go
@@ -47,7 +47,7 @@ type Config struct {
 	KubeConfig                         string
 	RequestTimeout                     time.Duration
 	DefaultTargets                     []string
-	GlooNamespace                      string
+	GlooNamespaces                     []string
 	SkipperRouteGroupVersion           string
 	Sources                            []string
 	Namespace                          string
@@ -213,7 +213,7 @@ var defaultConfig = &Config{
 	KubeConfig:                  "",
 	RequestTimeout:              time.Second * 30,
 	DefaultTargets:              []string{},
-	GlooNamespace:               "gloo-system",
+	GlooNamespaces:              []string{"gloo-system"},
 	SkipperRouteGroupVersion:    "zalando.org/v1",
 	Sources:                     nil,
 	Namespace:                   "",
@@ -407,7 +407,7 @@ func (cfg *Config) ParseFlags(args []string) error {
 	app.Flag("cf-password", "The password to log into the cloud foundry API").Default(defaultConfig.CFPassword).StringVar(&cfg.CFPassword)
 
 	// Flags related to Gloo
-	app.Flag("gloo-namespace", "Gloo namespace. (default: gloo-system)").Default("gloo-system").StringVar(&cfg.GlooNamespace)
+	app.Flag("gloo-namespace", "The Gloo Proxy namespace; specify multiple times for multiple namespaces. (default: gloo-system)").Default("gloo-system").StringsVar(&cfg.GlooNamespaces)
 
 	// Flags related to Skipper RouteGroup
 	app.Flag("skipper-routegroup-groupversion", "The resource version for skipper routegroup").Default(source.DefaultRoutegroupVersion).StringVar(&cfg.SkipperRouteGroupVersion)
diff --git a/pkg/apis/externaldns/types_test.go b/pkg/apis/externaldns/types_test.go
index 12dc621306..277779d9b2 100644
--- a/pkg/apis/externaldns/types_test.go
+++ b/pkg/apis/externaldns/types_test.go
@@ -35,7 +35,7 @@ var (
 		APIServerURL:                "",
 		KubeConfig:                  "",
 		RequestTimeout:              time.Second * 30,
-		GlooNamespace:               "gloo-system",
+		GlooNamespaces:               []string{"gloo-system"},
 		SkipperRouteGroupVersion:    "zalando.org/v1",
 		Sources:                     []string{"service"},
 		Namespace:                   "",
@@ -135,7 +135,7 @@ var (
 		APIServerURL:                "http://127.0.0.1:8080",
 		KubeConfig:                  "/some/path",
 		RequestTimeout:              time.Second * 77,
-		GlooNamespace:               "gloo-not-system",
+		GlooNamespaces:              []string{"gloo-not-system", "gloo-second-system"},
 		SkipperRouteGroupVersion:    "zalando.org/v2",
 		Sources:                     []string{"service", "ingress", "connector"},
 		Namespace:                   "namespace",
@@ -266,6 +266,7 @@ func TestParseFlags(t *testing.T) {
 				"--kubeconfig=/some/path",
 				"--request-timeout=77s",
 				"--gloo-namespace=gloo-not-system",
+				"--gloo-namespace=gloo-second-system",
 				"--skipper-routegroup-groupversion=zalando.org/v2",
 				"--source=service",
 				"--source=ingress",
@@ -392,7 +393,7 @@ func TestParseFlags(t *testing.T) {
 				"EXTERNAL_DNS_KUBECONFIG":                      "/some/path",
 				"EXTERNAL_DNS_REQUEST_TIMEOUT":                 "77s",
 				"EXTERNAL_DNS_CONTOUR_LOAD_BALANCER":           "heptio-contour-other/contour-other",
-				"EXTERNAL_DNS_GLOO_NAMESPACE":                  "gloo-not-system",
+				"EXTERNAL_DNS_GLOO_NAMESPACE":                  "gloo-not-system\ngloo-second-system",
 				"EXTERNAL_DNS_SKIPPER_ROUTEGROUP_GROUPVERSION": "zalando.org/v2",
 				"EXTERNAL_DNS_SOURCE":                          "service\ningress\nconnector",
 				"EXTERNAL_DNS_NAMESPACE":                       "namespace",
diff --git a/source/gloo_proxy.go b/source/gloo_proxy.go
index 09e96ead05..cdc7d210ce 100644
--- a/source/gloo_proxy.go
+++ b/source/gloo_proxy.go
@@ -96,15 +96,16 @@ type proxyVirtualHostMetadataSourceResourceRef struct {
 type glooSource struct {
 	dynamicKubeClient dynamic.Interface
 	kubeClient        kubernetes.Interface
-	glooNamespace     string
+	glooNamespaces    []string
 }
 
 // NewGlooSource creates a new glooSource with the given config
-func NewGlooSource(dynamicKubeClient dynamic.Interface, kubeClient kubernetes.Interface, glooNamespace string) (Source, error) {
+func NewGlooSource(dynamicKubeClient dynamic.Interface, kubeClient kubernetes.Interface,
+	glooNamespaces []string) (Source, error) {
 	return &glooSource{
 		dynamicKubeClient,
 		kubeClient,
-		glooNamespace,
+		glooNamespaces,
 	}, nil
 }
 
@@ -115,32 +116,34 @@ func (gs *glooSource) AddEventHandler(ctx context.Context, handler func()) {
 func (gs *glooSource) Endpoints(ctx context.Context) ([]*endpoint.Endpoint, error) {
 	endpoints := []*endpoint.Endpoint{}
 
-	proxies, err := gs.dynamicKubeClient.Resource(proxyGVR).Namespace(gs.glooNamespace).List(ctx, metav1.ListOptions{})
-	if err != nil {
-		return nil, err
-	}
-	for _, obj := range proxies.Items {
-		proxy := proxy{}
-		jsonString, err := obj.MarshalJSON()
-		if err != nil {
-			return nil, err
-		}
-		err = json.Unmarshal(jsonString, &proxy)
+	for _, ns := range gs.glooNamespaces {
+		proxies, err := gs.dynamicKubeClient.Resource(proxyGVR).Namespace(ns).List(ctx, metav1.ListOptions{})
 		if err != nil {
 			return nil, err
 		}
-		log.Debugf("Gloo: Find %s proxy", proxy.Metadata.Name)
-		proxyTargets, err := gs.proxyTargets(ctx, proxy.Metadata.Name)
-		if err != nil {
-			return nil, err
-		}
-		log.Debugf("Gloo[%s]: Find %d target(s) (%+v)", proxy.Metadata.Name, len(proxyTargets), proxyTargets)
-		proxyEndpoints, err := gs.generateEndpointsFromProxy(ctx, &proxy, proxyTargets)
-		if err != nil {
-			return nil, err
+		for _, obj := range proxies.Items {
+			proxy := proxy{}
+			jsonString, err := obj.MarshalJSON()
+			if err != nil {
+				return nil, err
+			}
+			err = json.Unmarshal(jsonString, &proxy)
+			if err != nil {
+				return nil, err
+			}
+			log.Debugf("Gloo: Find %s proxy", proxy.Metadata.Name)
+			proxyTargets, err := gs.proxyTargets(ctx, proxy.Metadata.Name, ns)
+			if err != nil {
+				return nil, err
+			}
+			log.Debugf("Gloo[%s]: Find %d target(s) (%+v)", proxy.Metadata.Name, len(proxyTargets), proxyTargets)
+			proxyEndpoints, err := gs.generateEndpointsFromProxy(ctx, &proxy, proxyTargets)
+			if err != nil {
+				return nil, err
+			}
+			log.Debugf("Gloo[%s]: Generate %d endpoint(s)", proxy.Metadata.Name, len(proxyEndpoints))
+			endpoints = append(endpoints, proxyEndpoints...)
 		}
-		log.Debugf("Gloo[%s]: Generate %d endpoint(s)", proxy.Metadata.Name, len(proxyEndpoints))
-		endpoints = append(endpoints, proxyEndpoints...)
 	}
 	return endpoints, nil
 }
@@ -195,8 +198,8 @@ func (gs *glooSource) annotationsFromProxySource(ctx context.Context, virtualHos
 	return annotations, nil
 }
 
-func (gs *glooSource) proxyTargets(ctx context.Context, name string) (endpoint.Targets, error) {
-	svc, err := gs.kubeClient.CoreV1().Services(gs.glooNamespace).Get(ctx, name, metav1.GetOptions{})
+func (gs *glooSource) proxyTargets(ctx context.Context, name string, namespace string) (endpoint.Targets, error) {
+	svc, err := gs.kubeClient.CoreV1().Services(namespace).Get(ctx, name, metav1.GetOptions{})
 	if err != nil {
 		return nil, err
 	}
diff --git a/source/gloo_proxy_test.go b/source/gloo_proxy_test.go
index 385d1a9692..1b72861cc7 100644
--- a/source/gloo_proxy_test.go
+++ b/source/gloo_proxy_test.go
@@ -311,7 +311,7 @@ func TestGlooSource(t *testing.T) {
 			proxyGVR: "ProxyList",
 		})
 
-	source, err := NewGlooSource(fakeDynamicClient, fakeKubernetesClient, defaultGlooNamespace)
+	source, err := NewGlooSource(fakeDynamicClient, fakeKubernetesClient, []string{defaultGlooNamespace})
 	assert.NoError(t, err)
 	assert.NotNil(t, source)
 
diff --git a/source/store.go b/source/store.go
index 1f2d1fbb0e..fab0371f6d 100644
--- a/source/store.go
+++ b/source/store.go
@@ -67,7 +67,7 @@ type Config struct {
 	CFAPIEndpoint                  string
 	CFUsername                     string
 	CFPassword                     string
-	GlooNamespace                  string
+	GlooNamespaces                 []string
 	SkipperRouteGroupVersion       string
 	RequestTimeout                 time.Duration
 	DefaultTargets                 []string
@@ -290,7 +290,7 @@ func BuildWithConfig(ctx context.Context, source string, p ClientGenerator, cfg
 		if err != nil {
 			return nil, err
 		}
-		return NewGlooSource(dynamicClient, kubernetesClient, cfg.GlooNamespace)
+		return NewGlooSource(dynamicClient, kubernetesClient, cfg.GlooNamespaces)
 	case "traefik-proxy":
 		kubernetesClient, err := p.KubeClient()
 		if err != nil {