Clp.jl version issue when installing JEMSS package

[jasperbos]

On a Fedora 35 machine with a fresh Julia 1.7.2 installation, I ran into an issue with Clp. I tried to install JEMSS and ran into stack trackes below after running Pkg.precompile().

It seems that the main error is LoadError: InitError: could not load library “/home/jasperbos/.julia/artifacts/e54c61de2448715375d627cc2deffc91d4a7815b/lib/libClp.so” libdmumps.so: cannot open shared object file: No such file or directory. However, this file does exist.

The solution was to use add [email protected] in the package manager. @odow provided this solution here. This issue might relate to this issue.

Thanks again!

julia> import Pkg;

julia> Pkg.precompile()
Precompiling project...
  ✗ Cgl_jll
  ✗ Cbc_jll
  ✗ Cbc
  ✗ JEMSS
  0 dependencies successfully precompiled in 24 seconds (126 already precompiled)

ERROR: The following 1 direct dependency failed to precompile:

JEMSS [da3c27b9-5cdd-52db-94a3-a4eefd7acbab]

Failed to precompile JEMSS [da3c27b9-5cdd-52db-94a3-a4eefd7acbab] to /home/jasperbos/.julia/compiled/v1.7/JEMSS/jl_cTm85F.
ERROR: LoadError: InitError: could not load library "/home/jasperbos/.julia/artifacts/e54c61de2448715375d627cc2deffc91d4a7815b/lib/libClp.so"
libdmumps.so: cannot open shared object file: No such file or directory
Stacktrace:
  [1] dlopen(s::String, flags::UInt32; throw_error::Bool)
    @ Base.Libc.Libdl ./libdl.jl:117
  [2] dlopen(s::String, flags::UInt32)
    @ Base.Libc.Libdl ./libdl.jl:117
  [3] macro expansion
    @ ~/.julia/packages/JLLWrappers/QpMQW/src/products/library_generators.jl:54 [inlined]
  [4] __init__()
    @ Clp_jll ~/.julia/packages/Clp_jll/ihKVc/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11.jl:22
  [5] _include_from_serialized(path::String, depmods::Vector{Any})
    @ Base ./loading.jl:768
  [6] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String)
    @ Base ./loading.jl:854
  [7] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1097
  [8] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:1013
  [9] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:997
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:418
 [11] top-level scope
    @ ~/.julia/packages/JLLWrappers/QpMQW/src/toplevel_generators.jl:188
 [12] include
    @ ./Base.jl:418 [inlined]
 [13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1318
 [14] top-level scope
    @ none:1
 [15] eval
    @ ./boot.jl:373 [inlined]
 [16] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [17] top-level scope
    @ none:1
during initialization of module Clp_jll
in expression starting at /home/jasperbos/.julia/packages/Cgl_jll/PomnD/src/wrappers/x86_64-linux-gnu-cxx11.jl:4
in expression starting at /home/jasperbos/.julia/packages/Cgl_jll/PomnD/src/Cgl_jll.jl:2
ERROR: LoadError: Failed to precompile Cgl_jll [3830e938-1dd0-5f3e-8b8e-b3ee43226782] to /home/jasperbos/.julia/compiled/v1.7/Cgl_jll/jl_FTujSY.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
    @ Base ./loading.jl:1466
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1410
  [4] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1120
  [5] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:1013
  [6] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:997
  [7] include(mod::Module, _path::String)
    @ Base ./Base.jl:418
  [8] top-level scope
    @ ~/.julia/packages/JLLWrappers/QpMQW/src/toplevel_generators.jl:188
  [9] include
    @ ./Base.jl:418 [inlined]
 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1318
 [11] top-level scope
    @ none:1
 [12] eval
    @ ./boot.jl:373 [inlined]
 [13] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [14] top-level scope
    @ none:1
in expression starting at /home/jasperbos/.julia/packages/Cbc_jll/szzPm/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11.jl:5
in expression starting at /home/jasperbos/.julia/packages/Cbc_jll/szzPm/src/Cbc_jll.jl:2
ERROR: LoadError: Failed to precompile Cbc_jll [38041ee0-ae04-5750-a4d2-bb4d0d83d27d] to /home/jasperbos/.julia/compiled/v1.7/Cbc_jll/jl_6HwxeA.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
    @ Base ./loading.jl:1466
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1410
  [4] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1120
  [5] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:1013
  [6] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:997
  [7] top-level scope
    @ ~/.julia/packages/Cbc/vMMGG/src/Cbc.jl:15
  [8] include
    @ ./Base.jl:418 [inlined]
  [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1318
 [10] top-level scope
    @ none:1
 [11] eval
    @ ./boot.jl:373 [inlined]
 [12] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [13] top-level scope
    @ none:1
in expression starting at /home/jasperbos/.julia/packages/Cbc/vMMGG/src/Cbc.jl:1
ERROR: LoadError: Failed to precompile Cbc [9961bab8-2fa3-5c5a-9d89-47fab24efd76] to /home/jasperbos/.julia/compiled/v1.7/Cbc/jl_mnaEh9.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
    @ Base ./loading.jl:1466
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1410
  [4] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1120
  [5] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:1013
  [6] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:997
  [7] include
    @ ./Base.jl:418 [inlined]
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
    @ Base ./loading.jl:1318
  [9] top-level scope
    @ none:1
 [10] eval
    @ ./boot.jl:373 [inlined]
 [11] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [12] top-level scope
    @ none:1
in expression starting at /home/jasperbos/.julia/packages/JEMSS/3snbw/src/JEMSS.jl:17
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types ~/julia-1.7.2/julia-1.7.2/share/julia/stdlib/v1.7/Pkg/src/Types.jl:68
 [2] precompile(ctx::Pkg.Types.Context; internal_call::Bool, strict::Bool, warn_loaded::Bool, already_instantiated::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
   @ Pkg.API ~/julia-1.7.2/julia-1.7.2/share/julia/stdlib/v1.7/Pkg/src/API.jl:1362
 [3] precompile
   @ ~/julia-1.7.2/julia-1.7.2/share/julia/stdlib/v1.7/Pkg/src/API.jl:1013 [inlined]
 [4] #precompile#220
   @ ~/julia-1.7.2/julia-1.7.2/share/julia/stdlib/v1.7/Pkg/src/API.jl:1011 [inlined]
 [5] precompile()
   @ Pkg.API ~/julia-1.7.2/julia-1.7.2/share/julia/stdlib/v1.7/Pkg/src/API.jl:1011
 [6] top-level scope
   @ REPL[19]:1