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TODO.md

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TODO for jampack

Refactoring ideas

  • Consider moving packages from "Depends:" to "Imports:".

Figures

  • update violin plots of CAI and UTR using consistent colors with supp fig 7 (CAI plot should be green, blue, purple) - Complete
  • redo supp fig 7b, percentage of transcript type by genelist, using detected Tx lists - Complete

Stats

  • update the diffSplice tables, update number of splicing differences per comparison (cb-cb, cb-de, de-de)