From cb8067e74925ae8ddbb6bb8ca712db93b2eb6e69 Mon Sep 17 00:00:00 2001
From: Joey McCollum <jpmccollum05834@yahoo.com>
Date: Tue, 12 Mar 2024 12:55:27 +1100
Subject: [PATCH] :bug: Changed AncestralStateLogger to AncestralSequenceLogger
 in beast_template.xml; bumped version number

---
 pyproject.toml                      | 2 +-
 teiphy/templates/beast_template.xml | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 8f3f673..c9cf70d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "teiphy"
-version = "0.1.9"
+version = "0.1.10"
 description = "Converts TEI XML collations to NEXUS and other formats"
 authors = ["Joey McCollum and Robert Turnbull"]
 license = "MIT"
diff --git a/teiphy/templates/beast_template.xml b/teiphy/templates/beast_template.xml
index 7b4eb36..737f871 100644
--- a/teiphy/templates/beast_template.xml
+++ b/teiphy/templates/beast_template.xml
@@ -292,10 +292,10 @@
             <log spec="TreeWithMetaDataLogger" id="treeWithMetaDataLogger" branchratemodel="@clock" tree="@tree"/>
         </logger>
         <operatorschedule spec="OperatorSchedule" id="operatorSchedule"/>
-        <logger id="ancestralStateLogger" fileName="$(tree).ancestral.trees" logEvery="10000" mode="tree">
+        <logger id="ancestralSequenceLogger" fileName="$(tree).ancestral.trees" logEvery="10000" mode="tree">
             <!-- Start character ancestral state loggers -->
             {%- for vu in variation_units %}
-            <log spec="beastlabs.evolution.likelihood.AncestralStateLogger" id="morphTreeLikelihood.character.{{ loop.index }}.anclogger" data="@filter.{{ loop.index }}" taxonset="@taxa" siteModel="@morphSiteModel.{{ loop.index }}" branchRateModel="@clock" tree="@tree" useAmbiguities="true" useTipLikelihoods="true"/>
+            <log spec="beastclassic.evolution.likelihood.AncestralSequenceLogger" id="morphTreeLikelihood.character.{{ loop.index }}.anclogger" tag="morphTreeLikelihood.character.{{ loop.index }}" data="@filter.{{ loop.index }}" siteModel="@morphSiteModel.{{ loop.index }}" branchRateModel="@clock" tree="@tree" useAmbiguities="true" useTipLikelihoods="true"/>
             {%- endfor %}
         </logger>
     </run>