stemma.yml

name: stemma

on: [push]
jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.10"]
    steps:
    - uses: actions/checkout@v3
    - name: Install poetry
      run: pipx install poetry
    - name: Install dependencies for Python ${{ matrix.python-version }}
      uses: actions/setup-python@v3
      with:
        python-version: ${{ matrix.python-version }}
        cache: 'poetry'
    - run: poetry install
    - name: Testing
      run: |
        poetry run teiphy -t reconstructed -t defective -t orthographic -m overlap -m lac -s"*" -s T --fill-correctors --format stemma example/ubs_ephesians.xml stemma_example
    - name: Install Phylogenetics Packages
      run: |
        sudo mkdir /root/bin
        git clone https://github.com/stemmatic/prep.git
        cd prep
        sudo make
        cd ..
        git clone https://github.com/stemmatic/stemma.git
        cd stemma
        sudo make
    - name: Phylogenetics Run
      run: |
        sudo /root/bin/prep stemma_example
        sudo /root/bin/stemma stemma_example a 100
        sudo /root/bin/soln stemma_example SOLN