diff --git a/tigramite/pcmci.py b/tigramite/pcmci.py index 0aa64899..e0489433 100644 --- a/tigramite/pcmci.py +++ b/tigramite/pcmci.py @@ -1064,9 +1064,9 @@ def _run_mci_or_variants(self, alpha_level : float, optional (default: 0.05) Significance level at which the p_matrix is thresholded to get graph. - fdr_method : str, optional (default: 'fdr_bh') + fdr_method : str, optional (default: 'none') Correction method, currently implemented is Benjamini-Hochberg - False Discovery Rate method. + False Discovery Rate method ('fdr_bh'). Returns ------- @@ -1218,9 +1218,9 @@ def run_mci(self, alpha_level : float, optional (default: 0.05) Significance level at which the p_matrix is thresholded to get graph. - fdr_method : str, optional (default: 'fdr_bh') + fdr_method : str, optional (default: 'none') Correction method, currently implemented is Benjamini-Hochberg - False Discovery Rate method. + False Discovery Rate method ('fdr_bh'). Returns ------- @@ -1287,9 +1287,9 @@ def get_lagged_dependencies(self, alpha_level : float, optional (default: 0.05) Significance level at which the p_matrix is thresholded to get graph. - fdr_method : str, optional (default: 'fdr_bh') + fdr_method : str, optional (default: 'none') Correction method, currently implemented is Benjamini-Hochberg - False Discovery Rate method. + False Discovery Rate method ('fdr_bh'). Returns ------- @@ -1354,9 +1354,9 @@ def run_fullci(self, alpha_level : float, optional (default: 0.05) Significance level at which the p_matrix is thresholded to get graph. - fdr_method : str, optional (default: 'fdr_bh') + fdr_method : str, optional (default: 'none') Correction method, currently implemented is Benjamini-Hochberg - False Discovery Rate method. + False Discovery Rate method ('fdr_bh'). Returns ------- @@ -1526,7 +1526,7 @@ def _ecdf(x): else: # Create a mask for these values mask = np.ones((N, N, tau_max_plusone), dtype='bool') - # Ignore values from autocorrelation indices + # Ignore values from lag-zero 'autocorrelation' indices mask[range(N), range(N), 0] = False # Exclude all contemporaneous values if requested if exclude_contemporaneous: