From aa16fa92c8a79dd387b9531e759bd49425aef698 Mon Sep 17 00:00:00 2001 From: Marcin <133694481+m7pr@users.noreply.github.com> Date: Tue, 21 Jan 2025 10:37:07 +0100 Subject: [PATCH 1/2] update packages versions for scheduled build (#292) Part of https://github.com/insightsengineering/nestdevs-tasks/issues/98 --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> --- .github/workflows/scheduled.yaml | 2 ++ DESCRIPTION | 18 +++++++++--------- man/tm_g_butterfly.Rd | 4 ++-- man/tm_g_patient_profile.Rd | 4 ++-- man/tm_g_spiderplot.Rd | 4 ++-- man/tm_g_swimlane.Rd | 4 ++-- man/tm_g_waterfall.Rd | 4 ++-- 7 files changed, 21 insertions(+), 19 deletions(-) diff --git a/.github/workflows/scheduled.yaml b/.github/workflows/scheduled.yaml index b7af6e2d..c78676bc 100644 --- a/.github/workflows/scheduled.yaml +++ b/.github/workflows/scheduled.yaml @@ -38,6 +38,8 @@ jobs: strategy: ${{ matrix.test-strategy }} additional-env-vars: | PKG_SYSREQS_DRY_RUN=true + extra-deps: | + MultiAssayExperiment (>= 1.32.0);SummarizedExperiment (>= 1.36.0);teal.slice (>= 0.5.1.9021) branch-cleanup: if: > github.event_name == 'schedule' || ( diff --git a/DESCRIPTION b/DESCRIPTION index d5afe363..594cfa6e 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -24,8 +24,8 @@ Depends: osprey (>= 0.1.16), R (>= 3.6), shiny (>= 1.6.0), - teal (>= 0.15.2.9079), - teal.transform (>= 0.5.0.9015) + teal (>= 0.15.2.9103), + teal.transform (>= 0.5.0.9021) Imports: checkmate (>= 2.1.0), dplyr (>= 1.0.5), @@ -33,12 +33,12 @@ Imports: ggplot2 (>= 3.4.0), lifecycle (>= 0.2.0), shinyvalidate, - teal.code (>= 0.5.0.9012), - teal.data (>= 0.6.0.9015), - teal.logger (>= 0.3.0.9003), - teal.reporter (>= 0.2.0), - teal.widgets (>= 0.4.0), - tern (>= 0.7.10), + teal.code (>= 0.5.0.9022), + teal.data (>= 0.6.0.9025), + teal.logger (>= 0.3.0.9004), + teal.reporter (>= 0.3.1.9023), + teal.widgets (>= 0.4.2.9025), + tern (>= 0.9.7), tidyr (>= 0.8.3) Suggests: knitr (>= 1.42), @@ -47,7 +47,7 @@ Suggests: testthat (>= 3.1.5), withr (>= 2.0.0) Config/Needs/verdepcheck: insightsengineering/osprey, rstudio/shiny, - insightsengineering/teal, insightsengineering/teal.transform, + insightsengineering/teal, insightsengineering/teal.slice, insightsengineering/teal.transform, mllg/checkmate, tidyverse/dplyr, insightsengineering/formatters, tidyverse/ggplot2, r-lib/lifecycle, daroczig/logger, rstudio/shinyvalidate, insightsengineering/teal.code, diff --git a/man/tm_g_butterfly.Rd b/man/tm_g_butterfly.Rd index 7bd6ffa7..de60e798 100644 --- a/man/tm_g_butterfly.Rd +++ b/man/tm_g_butterfly.Rd @@ -59,10 +59,10 @@ vector to indicate default value, minimum and maximum values.} \item{plot_width}{(\code{numeric(3)})\cr vector to indicate default value, minimum and maximum values.} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} } \value{ diff --git a/man/tm_g_patient_profile.Rd b/man/tm_g_patient_profile.Rd index 4a7f0a1a..d47fbd37 100644 --- a/man/tm_g_patient_profile.Rd +++ b/man/tm_g_patient_profile.Rd @@ -82,10 +82,10 @@ vector to indicate default value, minimum and maximum values.} \item{plot_width}{(\code{numeric(3)})\cr vector to indicate default value, minimum and maximum values.} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} } \value{ diff --git a/man/tm_g_spiderplot.Rd b/man/tm_g_spiderplot.Rd index f263257a..9e2e51a1 100644 --- a/man/tm_g_spiderplot.Rd +++ b/man/tm_g_spiderplot.Rd @@ -62,10 +62,10 @@ vector to indicate default value, minimum and maximum values.} \item{plot_width}{(\code{numeric(3)})\cr vector to indicate default value, minimum and maximum values.} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} } \value{ diff --git a/man/tm_g_swimlane.Rd b/man/tm_g_swimlane.Rd index 2a966510..8a672d16 100644 --- a/man/tm_g_swimlane.Rd +++ b/man/tm_g_swimlane.Rd @@ -64,10 +64,10 @@ vector to indicate default value, minimum and maximum values.} \item{plot_width}{(\code{numeric(3)})\cr vector to indicate default value, minimum and maximum values.} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} \item{x_label}{the label of the x axis} diff --git a/man/tm_g_waterfall.Rd b/man/tm_g_waterfall.Rd index 97cc517d..41a18191 100644 --- a/man/tm_g_waterfall.Rd +++ b/man/tm_g_waterfall.Rd @@ -85,10 +85,10 @@ vector to indicate default value, minimum and maximum values.} \item{plot_width}{(\code{numeric(3)})\cr vector to indicate default value, minimum and maximum values.} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} } \value{ From 5cf3bc3df0ec23739d8466bfff238acf2c245350 Mon Sep 17 00:00:00 2001 From: m7pr <133694481+m7pr@users.noreply.github.com> Date: Tue, 21 Jan 2025 09:37:56 +0000 Subject: [PATCH 2/2] [skip actions] Bump version to 0.1.16.9034 --- DESCRIPTION | 12 ++++++------ NEWS.md | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 594cfa6e..0e039c68 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: teal.osprey Title: 'teal' Modules for TLG Functions in Osprey -Version: 0.1.16.9033 -Date: 2025-01-15 +Version: 0.1.16.9034 +Date: 2025-01-21 Authors@R: c( person("Nina", "Qi", , "qit3@gene.com", role = c("aut", "cre")), person("Dawid", "Kaledkowski", , "dawid.kaledkowski@roche.com", role = "aut"), @@ -47,10 +47,10 @@ Suggests: testthat (>= 3.1.5), withr (>= 2.0.0) Config/Needs/verdepcheck: insightsengineering/osprey, rstudio/shiny, - insightsengineering/teal, insightsengineering/teal.slice, insightsengineering/teal.transform, - mllg/checkmate, tidyverse/dplyr, insightsengineering/formatters, - tidyverse/ggplot2, r-lib/lifecycle, daroczig/logger, - rstudio/shinyvalidate, insightsengineering/teal.code, + insightsengineering/teal, insightsengineering/teal.slice, + insightsengineering/teal.transform, mllg/checkmate, tidyverse/dplyr, + insightsengineering/formatters, tidyverse/ggplot2, r-lib/lifecycle, + daroczig/logger, rstudio/shinyvalidate, insightsengineering/teal.code, insightsengineering/teal.logger, insightsengineering/teal.reporter, insightsengineering/teal.widgets, insightsengineering/tern, tidyverse/tidyr, yihui/knitr, rstudio/rmarkdown, diff --git a/NEWS.md b/NEWS.md index f759e8e7..29601aff 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# teal.osprey 0.1.16.9033 +# teal.osprey 0.1.16.9034 * Removed `Show Warnings` modals from modules. * Moved `teal.data` from `Suggests` to `Imports`.