From 2a2a7e4e30faa531fd543fb059909f4010936f38 Mon Sep 17 00:00:00 2001 From: m7pr Date: Thu, 30 Jan 2025 13:32:09 +0100 Subject: [PATCH 1/3] remove lookup-refs --- .github/workflows/check.yaml | 52 -------------------------------- .github/workflows/docs.yaml | 13 -------- .github/workflows/release.yaml | 39 ------------------------ .github/workflows/scheduled.yaml | 28 ----------------- 4 files changed, 132 deletions(-) diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index b7f5c1ae..7fcf2f3f 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -30,19 +30,6 @@ jobs: _R_CHECK_EXAMPLE_TIMING_THRESHOLD_=10 additional-r-cmd-check-params: --as-cran deps-installation-method: setup-r-dependencies - lookup-refs: | - insightsengineering/formatters - insightsengineering/rtables - insightsengineering/rtables.officer - insightsengineering/hermes - insightsengineering/teal - insightsengineering/teal.transform - insightsengineering/teal.code - insightsengineering/teal.data - insightsengineering/teal.logger - insightsengineering/teal.reporter - insightsengineering/teal.widgets - insightsengineering/teal.slice r-cmd-non-cran: name: R CMD Check (non-CRAN) 🧬 uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main @@ -55,19 +42,6 @@ jobs: concurrency-group: non-cran unit-test-report-directory: unit-test-report-non-cran deps-installation-method: setup-r-dependencies - lookup-refs: | - insightsengineering/formatters - insightsengineering/rtables - insightsengineering/rtables.officer - insightsengineering/hermes - insightsengineering/teal - insightsengineering/teal.transform - insightsengineering/teal.code - insightsengineering/teal.data - insightsengineering/teal.logger - insightsengineering/teal.reporter - insightsengineering/teal.widgets - insightsengineering/teal.slice coverage: name: Coverage πŸ“” uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main @@ -77,19 +51,6 @@ jobs: additional-env-vars: | NOT_CRAN=true deps-installation-method: setup-r-dependencies - lookup-refs: | - insightsengineering/formatters - insightsengineering/rtables - insightsengineering/rtables.officer - insightsengineering/hermes - insightsengineering/teal - insightsengineering/teal.transform - insightsengineering/teal.code - insightsengineering/teal.data - insightsengineering/teal.logger - insightsengineering/teal.reporter - insightsengineering/teal.widgets - insightsengineering/teal.slice linter: if: github.event_name != 'push' name: SuperLinter πŸ¦Έβ€β™€οΈ @@ -102,19 +63,6 @@ jobs: with: auto-update: true deps-installation-method: setup-r-dependencies - lookup-refs: | - insightsengineering/formatters - insightsengineering/rtables - insightsengineering/rtables.officer - insightsengineering/hermes - insightsengineering/teal - insightsengineering/teal.transform - insightsengineering/teal.code - insightsengineering/teal.data - insightsengineering/teal.logger - insightsengineering/teal.reporter - insightsengineering/teal.widgets - insightsengineering/teal.slice gitleaks: name: gitleaks πŸ’§ uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml index 49588685..8fdf0ae0 100644 --- a/.github/workflows/docs.yaml +++ b/.github/workflows/docs.yaml @@ -43,16 +43,3 @@ jobs: default-landing-page: latest-tag additional-unit-test-report-directories: unit-test-report-non-cran deps-installation-method: setup-r-dependencies - lookup-refs: | - insightsengineering/formatters - insightsengineering/rtables - insightsengineering/rtables.officer - insightsengineering/hermes - insightsengineering/teal - insightsengineering/teal.transform - insightsengineering/teal.code - insightsengineering/teal.data - insightsengineering/teal.logger - insightsengineering/teal.reporter - insightsengineering/teal.widgets - insightsengineering/teal.slice diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml index b3ed87fb..6a4a5b8c 100644 --- a/.github/workflows/release.yaml +++ b/.github/workflows/release.yaml @@ -18,19 +18,6 @@ jobs: skip-r-cmd-check: true skip-r-cmd-install: true deps-installation-method: setup-r-dependencies - lookup-refs: | - insightsengineering/formatters - insightsengineering/rtables - insightsengineering/rtables.officer - insightsengineering/hermes - insightsengineering/teal - insightsengineering/teal.transform - insightsengineering/teal.code - insightsengineering/teal.data - insightsengineering/teal.logger - insightsengineering/teal.reporter - insightsengineering/teal.widgets - insightsengineering/teal.slice docs: name: Pkgdown Docs πŸ“š needs: release @@ -40,19 +27,6 @@ jobs: with: default-landing-page: latest-tag deps-installation-method: setup-r-dependencies - lookup-refs: | - insightsengineering/formatters - insightsengineering/rtables - insightsengineering/rtables.officer - insightsengineering/hermes - insightsengineering/teal - insightsengineering/teal.transform - insightsengineering/teal.code - insightsengineering/teal.data - insightsengineering/teal.logger - insightsengineering/teal.reporter - insightsengineering/teal.widgets - insightsengineering/teal.slice validation: name: R Package Validation report πŸ“ƒ needs: release @@ -61,19 +35,6 @@ jobs: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: deps-installation-method: setup-r-dependencies - lookup-refs: | - insightsengineering/formatters - insightsengineering/rtables - insightsengineering/rtables.officer - insightsengineering/hermes - insightsengineering/teal - insightsengineering/teal.transform - insightsengineering/teal.code - insightsengineering/teal.data - insightsengineering/teal.logger - insightsengineering/teal.reporter - insightsengineering/teal.widgets - insightsengineering/teal.slice release: name: Create release πŸŽ‰ uses: insightsengineering/r.pkg.template/.github/workflows/release.yaml@main diff --git a/.github/workflows/scheduled.yaml b/.github/workflows/scheduled.yaml index 593e7425..a78d91de 100644 --- a/.github/workflows/scheduled.yaml +++ b/.github/workflows/scheduled.yaml @@ -58,20 +58,6 @@ jobs: ) name: revdepcheck ↩️ uses: insightsengineering/r.pkg.template/.github/workflows/revdepcheck.yaml@main - with: - lookup-refs: | - insightsengineering/formatters - insightsengineering/rtables - insightsengineering/rtables.officer - insightsengineering/hermes - insightsengineering/teal - insightsengineering/teal.transform - insightsengineering/teal.code - insightsengineering/teal.data - insightsengineering/teal.logger - insightsengineering/teal.reporter - insightsengineering/teal.widgets - insightsengineering/teal.slice rhub: if: > github.event_name == 'schedule' || ( @@ -80,17 +66,3 @@ jobs: ) name: R-hub 🌐 uses: insightsengineering/r.pkg.template/.github/workflows/rhub.yaml@main - with: - lookup-refs: | - insightsengineering/formatters - insightsengineering/rtables - insightsengineering/rtables.officer - insightsengineering/hermes - insightsengineering/teal - insightsengineering/teal.transform - insightsengineering/teal.code - insightsengineering/teal.data - insightsengineering/teal.logger - insightsengineering/teal.reporter - insightsengineering/teal.widgets - insightsengineering/teal.slice From 8bfce7728bf0381306e466184933afc36315e9ab Mon Sep 17 00:00:00 2001 From: m7pr Date: Thu, 30 Jan 2025 13:32:19 +0100 Subject: [PATCH 2/3] vbump dependencies + add Remotes --- DESCRIPTION | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 7ac164f5..424393a3 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -49,9 +49,9 @@ Imports: stats, stringr, SummarizedExperiment (>= 1.36.0), - teal.data (>= 0.6.0.9025), - teal.logger (>= 0.3.0.9004), - teal.reporter (>= 0.3.1.9023), + teal.data (>= 0.7.0), + teal.logger (>= 0.3.1), + teal.reporter (>= 0.4.0), teal.widgets (>= 0.4.2.9025), tern (>= 0.9.7), utils @@ -73,6 +73,10 @@ VignetteBuilder: RdMacros: lifecycle biocViews: +Remotes: + insightsengineering/hermes, + insightsengineering/teal, + insightsengineering/teal.widgets Config/Needs/verdepcheck: tidyverse/ggplot2, rstudio/shiny, insightsengineering/teal, insightsengineering/teal.slice, insightsengineering/teal.code, insightsengineering/teal.transform, From 08644c63b2074e536f9cf84dba42859797b6e024 Mon Sep 17 00:00:00 2001 From: Marcin <133694481+m7pr@users.noreply.github.com> Date: Mon, 3 Feb 2025 10:39:36 +0100 Subject: [PATCH 3/3] vbump teal.widgets Signed-off-by: Marcin <133694481+m7pr@users.noreply.github.com> --- DESCRIPTION | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 424393a3..b25ee16d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -52,7 +52,7 @@ Imports: teal.data (>= 0.7.0), teal.logger (>= 0.3.1), teal.reporter (>= 0.4.0), - teal.widgets (>= 0.4.2.9025), + teal.widgets (>= 0.4.3), tern (>= 0.9.7), utils Suggests: @@ -75,8 +75,7 @@ RdMacros: biocViews: Remotes: insightsengineering/hermes, - insightsengineering/teal, - insightsengineering/teal.widgets + insightsengineering/teal Config/Needs/verdepcheck: tidyverse/ggplot2, rstudio/shiny, insightsengineering/teal, insightsengineering/teal.slice, insightsengineering/teal.code, insightsengineering/teal.transform,