Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

hdf5 export should add axis tag information #36

Closed
k-dominik opened this issue Jan 29, 2020 · 5 comments
Closed

hdf5 export should add axis tag information #36

k-dominik opened this issue Jan 29, 2020 · 5 comments

Comments

@k-dominik
Copy link
Contributor

in order to interpret axes correctly, it is necessary to add this information. Since this is intended for ilastik use, we should write out vigra-compatible axistags.

@Tomaz-Vieira
Copy link

Tomaz-Vieira commented Jan 29, 2020

I'd go even further and say we should add both the vigra axistags as well as the native h5 axis labels via dimension sacles so that it can also be interpreted by other consumers of h5

@emilmelnikov
Copy link
Member

It seems that dimension scales are not supported by JHDF5.

@k-dominik
Copy link
Contributor Author

k-dominik commented Mar 11, 2024

I'll bump this one, as it is an issue with opening the exported data in MoBiE, unfortunately. We need at least the vigra-style axistags.

@imagesc-bot
Copy link

This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/check-results-of-batch-processing-ilastik/92321/6

@k-dominik
Copy link
Contributor Author

closed via #126

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

4 participants