From a9c8a70673e27e6dce2b8074a49f609e05ebfe82 Mon Sep 17 00:00:00 2001 From: jrobinso Date: Fri, 11 Jun 2021 14:51:28 -0700 Subject: [PATCH] Update igv.js to 2.8.6 for variants template --- README.md | 6 ++++++ igv_reports/templates/variant_template.html | 3 +-- 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 1c6ceeb..eaca0fa 100644 --- a/README.md +++ b/README.md @@ -80,6 +80,8 @@ Variant sites can be defined from a [VCF](https://samtools.github.io/hts-specs/V UCSC [BED](https://genome.ucsc.edu/FAQ/FAQformat.html#format1), or a generic tab delimited file. +Note: VCF files must be tabix indexed, and must end with a ".gz" extension. The ".bgz" extension is not supported. + **Track file formats:** Currently supported track file formats are BAM, CRAM, VCF, BED, GFF3, and GTF. FASTA. BAM, CRAM, and VCF files must @@ -149,3 +151,7 @@ create_datauri \ --region 8:127,738,322-127,738,508 \ https://s3.amazonaws.com/1000genomes/data/HG00096/alignment/HG00096.alt_bwamem_GRCh38DH.20150718.GBR.low_coverage.cram ``` + + + +## [_Release Notes_](https://github.com/igvteam/igv-reports/releases) \ No newline at end of file diff --git a/igv_reports/templates/variant_template.html b/igv_reports/templates/variant_template.html index 0fd2565..e424206 100644 --- a/igv_reports/templates/variant_template.html +++ b/igv_reports/templates/variant_template.html @@ -12,8 +12,7 @@ IGV Variant Inspector - - +