From 320f7b8764847af705838e1967abb2d1c75235ce Mon Sep 17 00:00:00 2001 From: Titania Sugiarto Date: Tue, 14 Jan 2025 12:16:45 +0100 Subject: [PATCH 1/2] debugging comment deleted from MembraneSector --- src/PAModelpy/MembraneSector.py | 7 ------- 1 file changed, 7 deletions(-) diff --git a/src/PAModelpy/MembraneSector.py b/src/PAModelpy/MembraneSector.py index 7259a93..9896d73 100644 --- a/src/PAModelpy/MembraneSector.py +++ b/src/PAModelpy/MembraneSector.py @@ -79,13 +79,6 @@ def _add_membrane_constraint(self, model): model.solver.update() occupied_membrane.set_linear_coefficients(coefficients=coefficients) - # # Debugging - # for rxn, lb in model.rxn_old_bounds_lb.items(): - # model.reactions.get_by_id(rxn).lower_bound = lb - # - # for rxn, ub in model.rxn_old_bounds_ub.items(): - # model.reactions.get_by_id(rxn).upper_bound = ub - def calculate_occupied_membrane(self, model): occupied_membrane = 0 From a0bbd78050551108a2465a7228320aaa8635c2d8 Mon Sep 17 00:00:00 2001 From: Titania Sugiarto Date: Tue, 14 Jan 2025 13:27:31 +0100 Subject: [PATCH 2/2] unnecessary global variable in MembraneSector deleted --- src/PAModelpy/MembraneSector.py | 2 -- 1 file changed, 2 deletions(-) diff --git a/src/PAModelpy/MembraneSector.py b/src/PAModelpy/MembraneSector.py index 9896d73..03fc5d0 100644 --- a/src/PAModelpy/MembraneSector.py +++ b/src/PAModelpy/MembraneSector.py @@ -45,7 +45,6 @@ def _add_membrane_constraint(self, model): self.membrane_proteins = {} - self.total_occupied_membrane = 0 coefficients = { model.reactions.get_by_id(model.BIOMASS_REACTION).forward_variable: -self.slope } @@ -109,7 +108,6 @@ def _update_membrane_constraint(self, new_max_area:float, model): self.max_membrane_area = new_max_area self.membrane_proteins = {} - self.total_occupied_membrane = 0 coefficients = { model.reactions.get_by_id(model.BIOMASS_REACTION).forward_variable: -self.slope }