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annotation files #2

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jeffinrockey opened this issue May 28, 2018 · 1 comment
Open

annotation files #2

jeffinrockey opened this issue May 28, 2018 · 1 comment

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@jeffinrockey
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Dear David,

Could you please let me know what are the acceptable annotation formats usable with -a option.
I gave a gff and later a gtf. Both of them were not recognized.?

Regards,
Jeffin
@hhg7
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hhg7 commented May 28, 2018

hi Jeffin,

thanks for letting me know.

where have you downloaded the GTF? The GTF I downloaded from refFlat on http://hgdownload.cse.ucsc.edu/goldenPath/mm10/database/ and also gencode formats.

Please send me the GTF (or link where I can download) and I can debug.

-Dave

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@jeffinrockey @hhg7