diff --git a/docs/_static/tedana-ohbm2023-poster.png b/docs/_static/tedana-ohbm2023-poster.png new file mode 100644 index 000000000..c22ae7c89 Binary files /dev/null and b/docs/_static/tedana-ohbm2023-poster.png differ diff --git a/docs/_static/tedana-ohbm2024-poster.png b/docs/_static/tedana-ohbm2024-poster.png new file mode 100644 index 000000000..9b71c18a4 Binary files /dev/null and b/docs/_static/tedana-ohbm2024-poster.png differ diff --git a/docs/index.rst b/docs/index.rst index 7efacb78f..783cb33ba 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -112,8 +112,8 @@ When using tedana, please include the following citations: }

- tedana - This link is for the most recent version of the code and that page has links to DOIs + + 1. This link is for the most recent version of the code and that page has links to DOIs for older versions. To support reproducibility, please cite the version you used: https://doi.org/10.5281/zenodo.1250561 @@ -156,9 +156,9 @@ You can also learn more about `why citing software is important`_. Posters ******* -.. image:: /_static/tedana-ohbm2019-poster.png +.. image:: /_static/tedana-ohbm2024-poster.png -.. image:: /_static/tedana-ohbm2018-poster.png +.. image:: /_static/tedana-ohbm2023-poster.png ******************* diff --git a/docs/multi-echo.rst b/docs/multi-echo.rst index a4d80e586..3e940778b 100644 --- a/docs/multi-echo.rst +++ b/docs/multi-echo.rst @@ -424,6 +424,9 @@ individual echo level (see above). Instead, we recommend that researchers apply the same transforms to all echoes in an ME-EPI series. That is, that they calculate head motion correction parameters from one echo and apply the resulting transformation to all echoes. +Based on `Mao et. al. Imaging Neuroscience 2024`_, we recommend using the earliest echo. + +.. _Mao et. al. Imaging Neuroscience 2024: https://doi.org/10.1162/imag_a_00151 2. Perform slice timing correction and motion correction **before** multi-echo denoising @@ -514,19 +517,19 @@ Journal articles describing multi-echo methods Videos ====== -* An `educational session from OHBM 2017`_ by Dr. Prantik Kundu about multi-echo denoising -* A `series of lectures from the OHBM 2017 multi-echo session`_ on multiple facets of multi-echo data analysis -* | Multi-echo fMRI lecture from the `2018 NIH FMRI Summer Course`_ by Javier Gonzalez-Castillo - | `Slides from 2018 NIH FMRI Summer Course`_ -* NIMH Center for Multimodal Neuroimaging `Advantages of multi-echo fMRI`_ (2019) by Dan Handwerker, Javier Gonzalez-Castillo, and Vinai Roopchansingh +* | Multi-echo fMRI lecture from the `2024 NIH FMRI Summer Course`_ by Dan Handwerker + | `Slides from 2024 NIH FMRI Summer Course`_ * | MRI Together 2022 Conference Presentations by Eneko Uruñuela | Tedana: Analysis of echo-time dependent fMRI data (`recording `_, `slides `_) | A tour of tedana (`tour recording `_, `tour slides `_) +* | NIMH Center for Multimodal Neuroimaging `Advantages of multi-echo fMRI`_ (2019) by Dan Handwerker, Javier Gonzalez-Castillo, and Vinai Roopchansingh +* | Multi-echo fMRI lecture from the `2018 NIH FMRI Summer Course`_ by Javier Gonzalez-Castillo + | `Slides from 2018 NIH FMRI Summer Course`_ -.. _educational session from OHBM 2017: https://www.pathlms.com/ohbm/courses/5158/sections/7788/video_presentations/75977 -.. _series of lectures from the OHBM 2017 multi-echo session: https://www.pathlms.com/ohbm/courses/5158/sections/7822 -.. _2018 NIH FMRI Summer Course: https://fmrif.nimh.nih.gov/course/fmrif_course/2018/14_Javier_20180713 -.. _Slides from 2018 NIH FMRI Summer Course: https://fmrif.nimh.nih.gov/COURSE/fmrif_course/2018/content/14_Javier_20180713.pdf +.. _2024 NIH FMRI Summer Course: https://youtu.be/Uc-1DcgNQzk?feature=shared +.. _Slides from 2024 NIH FMRI Summer Course: https://fmrif.nimh.nih.gov/images/3/3a/12_MultiEcho_Summer_Handwerker2024.pdf +.. _2018 NIH FMRI Summer Course: https://www.youtube.com/watch?v=83bavs4rlUg +.. _Slides from 2018 NIH FMRI Summer Course: https://fmrif.nimh.nih.gov/images/1/12/14_Javier_20180713.pdf .. _Advantages of multi-echo fMRI: https://youtu.be/G1Ftd2IwF14