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Downloaded and saved the human mitosis image as human_mitosis_small.png. #10

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This message was generated by git-bob (version: 0.9.0, model: gpt-4o-2024-08-06, log), an experimental AI-based assistant. It can make mistakes and has limitations. Check its messages carefully.

The human mitosis image has been downloaded and saved as human_mitosis_small.png.

During solving this task, the following errors occurred:

  • Error during {'action': 'create', 'filename': 'nuclei_segmentation.ipynb'}: Error during notebook execution: [Errno 13] Permission denied: '/human_mitosis_small.png'
        Traceback (most recent call last):
        File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_ai_github_utilities.py", line 353, in create_or_modify_file
          write_file_in_branch(repository, branch_name, f"{path_without_filename}/{file}", file_content2, f"Adding {path_without_filename}/{file} created by notebook")
        File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_github_utilities.py", line 365, in write_file_in_branch
          with open(file_path, "wb") as f:
               ^^^^^^^^^^^^^^^^^^^^^
      PermissionError: [Errno 13] Permission denied: '/human_mitosis_small.png'
    

    During handling of the above exception, another exception occurred:

    Traceback (most recent call last):
    File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_ai_github_utilities.py", line 474, in solve_github_issue
    message = filename + ":" + create_or_modify_file(repository, issue, filename, branch_name, discussion,
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_ai_github_utilities.py", line 357, in create_or_modify_file
    raise ValueError(f"Error during notebook execution: {e}")
    ValueError: Error during notebook execution: [Errno 13] Permission denied: '/human_mitosis_small.png'

closes #9

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[BioImage Analysis]: Nuclei segmentation
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