[Statistics question]: violin plot

[haesleinhuepf]

Question:

Generate two 1d numeric example datasets which are combinations of three normal distributions each, with different means and different standard deviations. Use this data to draw a violin plot.

Python Tools

• List of Python libraries we should use for answering this:
  • numpy
  • scipy
  • seaborn

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git-bob try to do this

[github-actions]

^{This message was generated by git-bob (version: 0.10.0, model: gpt-4o-2024-08-06, log), an experimental AI-based assistant. It can make mistakes and has limitations. Check its messages carefully.}

A new script named violin_plot.py was created to generate two mixed normal distributions and produce a violin plot using the specified libraries.

[haesleinhuepf]

Please implement this as Jupyter Notebook. git-bob try to implement this

[github-actions]

^{This message was generated by git-bob (version: 0.10.0, model: gpt-4o-2024-08-06, log), an experimental AI-based assistant. It can make mistakes and has limitations. Check its messages carefully.}

A Jupyter Notebook titled violin_plot.ipynb was created to guide users through the process of generating mixed normal distributions and constructing a violin plot in a step-by-step manner. A visual representation of the result was also generated and saved as an image file: .

During solving this task, the following errors occurred:

• Error during {'action': 'delete', 'filename': 'violin_plot.py'}: 404 {"message": "Not Found", "documentation_url": "https://docs.github.com/rest/repos/contents#get-repository-content", "status": "404"}

      Traceback (most recent call last):
      File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_ai_github_utilities.py", line 483, in solve_github_issue
        Config.git_utilities.delete_file_from_repository(repository, branch_name, filename)
      File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_github_utilities.py", line 772, in delete_file_from_repository
        file = get_file_in_repository(repository, branch_name, file_path)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_github_utilities.py", line 476, in get_file_in_repository
        return repo.get_contents(file_path, ref=branch_name)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/site-packages/github/Repository.py", line 2204, in get_contents
        headers, data = self._requester.requestJsonAndCheck(
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/site-packages/github/Requester.py", line 550, in requestJsonAndCheck
        return self.__check(*self.requestJson(verb, url, parameters, headers, input, self.__customConnection(url)))
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/site-packages/github/Requester.py", line 611, in __check
        raise self.createException(status, responseHeaders, data)
    github.GithubException.UnknownObjectException: 404 {"message": "Not Found", "documentation_url": "https://docs.github.com/rest/repos/contents#get-repository-content", "status": "404"}
    

[haesleinhuepf]

Adapt the plot so that I can see the individual data points on top of the violin. git-bob try to implement this

[github-actions]

^{This message was generated by git-bob (version: 0.10.0, model: gpt-4o-2024-08-06, log), an experimental AI-based assistant. It can make mistakes and has limitations. Check its messages carefully.}

The commit message indicates that the file "violin_plot.ipynb" was downloaded from the repository https://github.com/haesleinhuepf/git-bob-playground on the branch "git-bob-mod-qJFnf5XmME" and saved as "violin_plot.ipynb". No additional files or images were created or modified based on the provided information.

During solving this task, the following errors occurred:

• Error during {'action': 'delete', 'filename': 'violin_plot.py'}: 404 {"message": "Not Found", "documentation_url": "https://docs.github.com/rest/repos/contents#get-repository-content", "status": "404"}

      Traceback (most recent call last):
      File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_ai_github_utilities.py", line 483, in solve_github_issue
        Config.git_utilities.delete_file_from_repository(repository, branch_name, filename)
      File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_github_utilities.py", line 772, in delete_file_from_repository
        file = get_file_in_repository(repository, branch_name, file_path)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_github_utilities.py", line 476, in get_file_in_repository
        return repo.get_contents(file_path, ref=branch_name)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/site-packages/github/Repository.py", line 2204, in get_contents
        headers, data = self._requester.requestJsonAndCheck(
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/site-packages/github/Requester.py", line 550, in requestJsonAndCheck
        return self.__check(*self.requestJson(verb, url, parameters, headers, input, self.__customConnection(url)))
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/site-packages/github/Requester.py", line 611, in __check
        raise self.createException(status, responseHeaders, data)
    github.GithubException.UnknownObjectException: 404 {"message": "Not Found", "documentation_url": "https://docs.github.com/rest/repos/contents#get-repository-content", "status": "404"}
    

• Error during {'action': 'modify', 'filename': 'violin_plot.ipynb'}: Expecting value: line 1 column 1 (char 0)

      Traceback (most recent call last):
      File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_ai_github_utilities.py", line 468, in solve_github_issue
        message = filename + ":" + create_or_modify_file(repository, issue, filename, branch_name, discussion,
                                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_ai_github_utilities.py", line 249, in create_or_modify_file
        file_content = erase_outputs_of_code_cells(file_content)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/runner/work/git-bob-playground/git-bob-playground/git-bob/src/git_bob/_utilities.py", line 132, in erase_outputs_of_code_cells
        notebook = json.loads(clean_file_content)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/json/__init__.py", line 346, in loads
        return _default_decoder.decode(s)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/json/decoder.py", line 337, in decode
        obj, end = self.raw_decode(s, idx=_w(s, 0).end())
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/json/decoder.py", line 355, in raw_decode
        raise JSONDecodeError("Expecting value", s, err.value) from None
    json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
    

[haesleinhuepf]

git-bob implement what we discussed above (violin plot + data points)

[haesleinhuepf]

git-bob implement this again. Make sure the notebook you create is in json format