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Ome Zarr example notebook #229

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haesleinhuepf opened this issue Feb 6, 2025 · 5 comments · May be fixed by #230

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haesleinhuepf commented Feb 6, 2025

git-bob implement a Jupyter notebook containing this: https://github.com/NEUBIAS/training-resources/blob/master/_includes/ome_zarr/open_ome_zarr_ome-zarr-py.md

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Add example notebook for working with OME-Zarr files #230

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tischi commented Feb 6, 2025

https://github.com/NEUBIAS/training-resources/blob/master/_includes/ome_zarr/ome_zarr_inspection_ome-zarr-py.md

tischi commented Feb 6, 2025

https://github.com/NEUBIAS/training-resources/blob/master/_includes/ome_zarr/ome_zarr_visualisation_napari.md

tischi commented Feb 6, 2025

https://github.com/NEUBIAS/training-resources/blob/master/_includes/ome_zarr/open_local_ome_zarr_zarr-python.md

tischi commented Feb 6, 2025

https://github.com/NEUBIAS/training-resources/blob/master/_includes/ome_zarr/save_ome_zarr_ome-zarr-py.md

tischi commented Feb 6, 2025

This one is not really python, but maybe still interesting:

https://github.com/NEUBIAS/training-resources/blob/master/_includes/ome_zarr/ome_zarr_segmentation_zseg.md

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