git-bob.yml

name: git-bob acting

on:
  issues:
    types: [opened]
  issue_comment:
    types:
      - created
  pull_request:
    types: [opened, synchronize]
  pull_request_review_comment:
    types: [ created ]

jobs:
  respond:
    runs-on: ubuntu-latest

    steps:
    - name: Checkout main branch
      if: ${{ github.event.issue.pull_request == null }}  # Only run if it's NOT a PR comment
      uses: actions/checkout@v3

    - name: Checkout PR head branch
      if: ${{ github.event.issue.pull_request != null }}  # Only run if it's a PR comment
      uses: actions/checkout@v3
      with:
        ref: ${{ github.event.pull_request.head.ref }}  # Checkout the PR head branch

    - name: Display the current branch
      run: git branch

    - name: Print pull request details
      run: |  
        echo "Pull Request Number - ${{ github.event.pull_request.number }}"
        echo "github.event.issue.pull_request - ${{ github.event.issue.pull_request }}"
        echo "github.event.pull_request.head.ref - ${{ github.event.pull_request.head.ref }}"
        echo "github.event.issue.pull_request.head.ref - ${{ github.event.issue.pull_request.head.ref }}"
        echo "Organization - ${{ github.repository_owner }}"
        echo "Repository Name - ${{ github.repository }}"

    - name: Print Job details
      run: |  
        echo "Run ID - ${{ github.run_id }}"
        echo "Run No - ${{ github.run_number }}"
        echo "Job    - ${{ github.job }}"
        echo "Job ID - ${{ github.job_id }}"

    - name: Set up Python
      uses: actions/setup-python@v2
      with:
        python-version: 3.x

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install -r requirements.txt
    - name: Install git-bob development version
      run: |
        git clone https://github.com/haesleinhuepf/git-bob.git
        cd git-bob
        git fetch --all
        git checkout -b git-bob-mod-3uhijLLAmX origin/git-bob-mod-3uhijLLAmX
        pip install -e .
        cd ..

    - name: Run git-bob
      env:
        ANTHROPIC_API_KEY: "${{ secrets.ANTHROPIC_API_KEY }}"
        GOOGLE_API_KEY: "${{ secrets.GOOGLE_API_KEY }}"
        GIT_BOB_LLM_NAME: "${{ secrets.GIT_BOB_LLM_NAME }}"
        OPENAI_API_KEY: "${{ secrets.OPENAI_API_KEY }}"
        GH_MODELS_API_KEY: "${{ secrets.GH_MODELS_API_KEY }}"
        GITHUB_API_KEY: "${{ secrets.GITHUB_TOKEN }}"
        GITHUB_RUN_ID: "${{ github.run_id }}"
        TWINE_USERNAME: "${{ secrets.TWINE_USERNAME }}"
        TWINE_PASSWORD: "${{ secrets.TWINE_PASSWORD }}"
        SYSTEM_MESSAGE: |
          You are an extremely skilled Bio-image Analyst python developer. Your name is git-bob. You are sometimes called github-actions bot.
          You can solve scientific image analysis and programming tasks and review code.
      
          ## Python specific instructions
          
          You preferably use the python libraries mentioned in the discussion.
          Unless told otherwise, you write code in Python Jupyter Notebooks.
          If you create images, show the results and save them in variables for later reuse.
          If the user asks for the following simple tasks, use these code snippets.
                    
          ## General instructions
          
          When asked to solve a specific problem, you keep your code changes minimal and only solve the problem at hand.
          You cannot retrieve information from other sources but from github.com.
          Do not claim anything that you don't know.
          If you do not know the answer to a question, just say that you don't know and tag @haesleinhuepf so that he can answer the question.
          In case you are asked to review code, you focus on the quality of the code.
          
        VISION_SYSTEM_MESSAGE: |
          You are a scientists with excellent skills when it comes to describing scientific images. When describing an image, you typically explain:
          * What is shown in the image.
          * If the image shows clearly distinct objects in its channels, these structures are listed for each channel individually.
          * You speculate how the image was acquired.
      run: |
        git-bob github-action ${{ github.repository }} ${{ github.event.pull_request.number }} ${{ github.event.issue.number }}